Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05275

Experiment: R2A_PIPES pH 4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_05270 and OKGIIK_05275 overlap by 4 nucleotidesOKGIIK_05275 and OKGIIK_05280 are separated by 1 nucleotidesOKGIIK_05280 and OKGIIK_05285 are separated by 52 nucleotides OKGIIK_05270: OKGIIK_05270 - Molybdopterin molybdenumtransferase, at 1,150,721 to 1,151,974 _05270 OKGIIK_05275: OKGIIK_05275 - Thiamine biosynthesis protein ThiS, at 1,151,971 to 1,152,231 _05275 OKGIIK_05280: OKGIIK_05280 - Molybdopterin synthase catalytic subunit, at 1,152,233 to 1,152,730 _05280 OKGIIK_05285: OKGIIK_05285 - Molybdenum cofactor guanylyltransferase, at 1,152,783 to 1,153,292 _05285 Position (kb) 1151 1152 1153Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1151.167 kb on + strand, within OKGIIK_05270at 1151.208 kb on + strand, within OKGIIK_05270at 1151.209 kb on - strand, within OKGIIK_05270at 1151.209 kb on - strand, within OKGIIK_05270at 1151.209 kb on - strand, within OKGIIK_05270at 1151.387 kb on + strand, within OKGIIK_05270at 1151.387 kb on + strand, within OKGIIK_05270at 1151.387 kb on + strand, within OKGIIK_05270at 1151.387 kb on + strand, within OKGIIK_05270at 1151.388 kb on - strand, within OKGIIK_05270at 1151.388 kb on - strand, within OKGIIK_05270at 1151.388 kb on - strand, within OKGIIK_05270at 1151.556 kb on + strand, within OKGIIK_05270at 1151.556 kb on + strand, within OKGIIK_05270at 1151.556 kb on + strand, within OKGIIK_05270at 1151.556 kb on + strand, within OKGIIK_05270at 1151.557 kb on - strand, within OKGIIK_05270at 1151.557 kb on - strand, within OKGIIK_05270at 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.927 kb on + strandat 1151.928 kb on - strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.971 kb on - strandat 1151.971 kb on - strandat 1151.971 kb on - strandat 1151.971 kb on - strandat 1151.971 kb on - strandat 1152.107 kb on + strand, within OKGIIK_05275at 1152.108 kb on - strand, within OKGIIK_05275at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.393 kb on - strand, within OKGIIK_05280at 1152.393 kb on - strand, within OKGIIK_05280at 1152.393 kb on - strand, within OKGIIK_05280at 1152.479 kb on + strand, within OKGIIK_05280at 1152.479 kb on + strand, within OKGIIK_05280at 1152.479 kb on + strand, within OKGIIK_05280at 1152.479 kb on + strand, within OKGIIK_05280at 1152.480 kb on - strand, within OKGIIK_05280at 1152.480 kb on - strand, within OKGIIK_05280at 1152.480 kb on - strand, within OKGIIK_05280at 1152.480 kb on - strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.630 kb on - strand, within OKGIIK_05280at 1152.630 kb on - strand, within OKGIIK_05280at 1152.892 kb on - strand, within OKGIIK_05285at 1152.984 kb on + strand, within OKGIIK_05285at 1152.984 kb on + strand, within OKGIIK_05285at 1152.984 kb on + strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.129 kb on + strand, within OKGIIK_05285at 1153.129 kb on + strand, within OKGIIK_05285at 1153.130 kb on - strand, within OKGIIK_05285at 1153.130 kb on - strand, within OKGIIK_05285at 1153.130 kb on - strand, within OKGIIK_05285at 1153.130 kb on - strand, within OKGIIK_05285at 1153.219 kb on + strand, within OKGIIK_05285at 1153.220 kb on - strand, within OKGIIK_05285

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.5
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1,151,167 + OKGIIK_05270 0.36 -0.0
1,151,208 + OKGIIK_05270 0.39 +0.4
1,151,209 - OKGIIK_05270 0.39 +1.4
1,151,209 - OKGIIK_05270 0.39 +0.5
1,151,209 - OKGIIK_05270 0.39 -0.6
1,151,387 + OKGIIK_05270 0.53 -1.9
1,151,387 + OKGIIK_05270 0.53 +0.5
1,151,387 + OKGIIK_05270 0.53 -0.4
1,151,387 + OKGIIK_05270 0.53 -2.3
1,151,388 - OKGIIK_05270 0.53 -1.4
1,151,388 - OKGIIK_05270 0.53 +1.5
1,151,388 - OKGIIK_05270 0.53 +0.5
1,151,556 + OKGIIK_05270 0.67 +0.7
1,151,556 + OKGIIK_05270 0.67 +0.3
1,151,556 + OKGIIK_05270 0.67 +0.1
1,151,556 + OKGIIK_05270 0.67 -0.2
1,151,557 - OKGIIK_05270 0.67 -1.4
1,151,557 - OKGIIK_05270 0.67 +0.4
1,151,925 + -1.3
1,151,925 + +0.1
1,151,925 + -0.2
1,151,925 + +0.8
1,151,925 + -1.4
1,151,925 + -0.5
1,151,925 + +0.4
1,151,925 + +0.4
1,151,925 + +1.5
1,151,925 + +0.1
1,151,925 + -1.1
1,151,926 - -0.5
1,151,926 - -0.1
1,151,926 - +0.1
1,151,926 - +0.1
1,151,926 - -1.6
1,151,926 - -2.2
1,151,926 - -0.2
1,151,927 + -0.9
1,151,928 - -0.3
1,151,970 + -0.1
1,151,970 + -0.1
1,151,970 + -2.0
1,151,970 + -0.9
1,151,970 + -0.5
1,151,970 + +1.1
1,151,971 - -0.2
1,151,971 - -1.4
1,151,971 - -0.3
1,151,971 - +0.2
1,151,971 - +0.7
1,152,107 + OKGIIK_05275 0.52 -0.5
1,152,108 - OKGIIK_05275 0.52 -0.5
1,152,392 + OKGIIK_05280 0.32 -0.7
1,152,392 + OKGIIK_05280 0.32 -0.7
1,152,392 + OKGIIK_05280 0.32 +1.3
1,152,392 + OKGIIK_05280 0.32 +1.4
1,152,392 + OKGIIK_05280 0.32 +0.2
1,152,392 + OKGIIK_05280 0.32 -1.1
1,152,392 + OKGIIK_05280 0.32 -0.1
1,152,393 - OKGIIK_05280 0.32 -1.6
1,152,393 - OKGIIK_05280 0.32 +0.5
1,152,393 - OKGIIK_05280 0.32 -0.3
1,152,479 + OKGIIK_05280 0.49 -0.5
1,152,479 + OKGIIK_05280 0.49 -2.1
1,152,479 + OKGIIK_05280 0.49 -1.5
1,152,479 + OKGIIK_05280 0.49 +0.5
1,152,480 - OKGIIK_05280 0.50 -1.4
1,152,480 - OKGIIK_05280 0.50 -0.6
1,152,480 - OKGIIK_05280 0.50 -1.1
1,152,480 - OKGIIK_05280 0.50 +0.4
1,152,629 + OKGIIK_05280 0.80 -0.4
1,152,629 + OKGIIK_05280 0.80 +0.7
1,152,629 + OKGIIK_05280 0.80 -1.1
1,152,629 + OKGIIK_05280 0.80 -0.6
1,152,629 + OKGIIK_05280 0.80 -0.1
1,152,630 - OKGIIK_05280 0.80 +0.1
1,152,630 - OKGIIK_05280 0.80 -0.1
1,152,892 - OKGIIK_05285 0.21 -0.2
1,152,984 + OKGIIK_05285 0.39 -0.3
1,152,984 + OKGIIK_05285 0.39 -1.0
1,152,984 + OKGIIK_05285 0.39 +1.3
1,152,985 - OKGIIK_05285 0.40 +0.1
1,152,985 - OKGIIK_05285 0.40 +1.4
1,152,985 - OKGIIK_05285 0.40 +1.4
1,152,985 - OKGIIK_05285 0.40 +0.4
1,152,985 - OKGIIK_05285 0.40 -0.1
1,152,985 - OKGIIK_05285 0.40 +0.5
1,153,094 + OKGIIK_05285 0.61 -2.6
1,153,094 + OKGIIK_05285 0.61 -2.5
1,153,094 + OKGIIK_05285 0.61 -1.8
1,153,094 + OKGIIK_05285 0.61 -0.2
1,153,094 + OKGIIK_05285 0.61 +1.5
1,153,094 + OKGIIK_05285 0.61 -0.2
1,153,094 + OKGIIK_05285 0.61 -0.6
1,153,094 + OKGIIK_05285 0.61 +1.3
1,153,094 + OKGIIK_05285 0.61 -0.6
1,153,094 + OKGIIK_05285 0.61 +0.8
1,153,094 + OKGIIK_05285 0.61 -0.9
1,153,094 + OKGIIK_05285 0.61 +0.2
1,153,094 + OKGIIK_05285 0.61 -1.5
1,153,094 + OKGIIK_05285 0.61 +1.3
1,153,094 + OKGIIK_05285 0.61 +0.1
1,153,094 + OKGIIK_05285 0.61 -1.1
1,153,094 + OKGIIK_05285 0.61 -1.6
1,153,094 + OKGIIK_05285 0.61 -0.3
1,153,094 + OKGIIK_05285 0.61 -2.0
1,153,094 + OKGIIK_05285 0.61 -2.0
1,153,094 + OKGIIK_05285 0.61 +0.3
1,153,094 + OKGIIK_05285 0.61 -1.1
1,153,094 + OKGIIK_05285 0.61 -0.6
1,153,094 + OKGIIK_05285 0.61 +1.0
1,153,094 + OKGIIK_05285 0.61 -0.3
1,153,094 + OKGIIK_05285 0.61 -1.6
1,153,094 + OKGIIK_05285 0.61 -0.1
1,153,094 + OKGIIK_05285 0.61 -0.3
1,153,094 + OKGIIK_05285 0.61 -0.5
1,153,094 + OKGIIK_05285 0.61 -3.0
1,153,094 + OKGIIK_05285 0.61 -1.4
1,153,094 + OKGIIK_05285 0.61 +0.6
1,153,095 - OKGIIK_05285 0.61 -0.1
1,153,095 - OKGIIK_05285 0.61 +1.1
1,153,095 - OKGIIK_05285 0.61 -2.4
1,153,095 - OKGIIK_05285 0.61 +0.7
1,153,095 - OKGIIK_05285 0.61 -1.5
1,153,095 - OKGIIK_05285 0.61 -0.9
1,153,095 - OKGIIK_05285 0.61 -1.0
1,153,095 - OKGIIK_05285 0.61 +0.2
1,153,095 - OKGIIK_05285 0.61 -1.1
1,153,095 - OKGIIK_05285 0.61 -0.3
1,153,095 - OKGIIK_05285 0.61 -2.1
1,153,095 - OKGIIK_05285 0.61 +1.0
1,153,095 - OKGIIK_05285 0.61 -0.5
1,153,095 - OKGIIK_05285 0.61 -2.7
1,153,095 - OKGIIK_05285 0.61 -0.9
1,153,095 - OKGIIK_05285 0.61 -0.2
1,153,095 - OKGIIK_05285 0.61 +1.3
1,153,095 - OKGIIK_05285 0.61 +0.0
1,153,129 + OKGIIK_05285 0.68 +0.5
1,153,129 + OKGIIK_05285 0.68 -1.5
1,153,130 - OKGIIK_05285 0.68 -1.4
1,153,130 - OKGIIK_05285 0.68 -0.6
1,153,130 - OKGIIK_05285 0.68 +1.2
1,153,130 - OKGIIK_05285 0.68 +2.5
1,153,219 + OKGIIK_05285 0.85 -0.6
1,153,220 - OKGIIK_05285 0.86 -0.1

Or see this region's nucleotide sequence