Experiment: R2A_PIPES pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04100 and rAYT are separated by 169 nucleotides rAYT and OKGIIK_04110 overlap by 30 nucleotides OKGIIK_04110 and OKGIIK_04115 are separated by 47 nucleotides
OKGIIK_04100: OKGIIK_04100 - IS4 family transposase, at 899,669 to 900,877
_04100
OKGIIK_04105: rAYT - REP element-mobilizing transposase RayT, at 901,047 to 901,526
rAYT
OKGIIK_04110: OKGIIK_04110 - IS3 family transposase, at 901,497 to 902,315
_04110
OKGIIK_04115: OKGIIK_04115 - Mobile element protein, at 902,363 to 902,650
_04115
Position (kb) 901
902 Strain fitness (log2 ratio) -2
-1
0
1
2 at 900.910 kb on + strand at 900.911 kb on - strand at 900.911 kb on - strand at 900.911 kb on - strand at 900.911 kb on - strand at 900.929 kb on + strand at 900.929 kb on + strand at 900.929 kb on + strand at 900.930 kb on - strand at 900.930 kb on - strand at 900.930 kb on - strand at 900.930 kb on - strand at 900.930 kb on - strand at 901.153 kb on - strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.220 kb on + strand, within rAYT at 901.220 kb on + strand, within rAYT at 901.221 kb on - strand, within rAYT at 901.249 kb on + strand, within rAYT at 901.250 kb on - strand, within rAYT at 901.280 kb on + strand, within rAYT at 901.280 kb on + strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.297 kb on - strand, within rAYT at 901.297 kb on - strand, within rAYT at 901.297 kb on - strand, within rAYT at 901.335 kb on - strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.354 kb on - strand, within rAYT at 901.354 kb on - strand, within rAYT at 901.354 kb on - strand, within rAYT at 901.354 kb on - strand, within rAYT at 901.383 kb on + strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.405 kb on - strand, within rAYT at 901.405 kb on - strand, within rAYT at 901.455 kb on + strand, within rAYT at 901.456 kb on - strand, within rAYT at 901.456 kb on - strand, within rAYT at 901.470 kb on + strand, within rAYT at 901.470 kb on + strand, within rAYT at 901.471 kb on - strand, within rAYT at 901.471 kb on - strand, within rAYT at 901.499 kb on - strand at 901.499 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.5 remove 900,910 + -2.0 900,911 - -1.8 900,911 - -1.6 900,911 - -0.3 900,911 - +1.5 900,929 + +0.2 900,929 + -1.9 900,929 + +0.5 900,930 - -0.4 900,930 - -1.3 900,930 - +0.7 900,930 - +0.4 900,930 - +0.1 901,153 - rAYT OKGIIK_04105 0.22 -1.1 901,206 + rAYT OKGIIK_04105 0.33 +2.0 901,206 + rAYT OKGIIK_04105 0.33 -0.6 901,206 + rAYT OKGIIK_04105 0.33 -0.6 901,206 + rAYT OKGIIK_04105 0.33 +2.0 901,206 + rAYT OKGIIK_04105 0.33 -1.3 901,206 + rAYT OKGIIK_04105 0.33 -1.7 901,206 + rAYT OKGIIK_04105 0.33 -2.7 901,206 + rAYT OKGIIK_04105 0.33 -2.1 901,206 + rAYT OKGIIK_04105 0.33 +0.5 901,207 - rAYT OKGIIK_04105 0.33 +2.0 901,207 - rAYT OKGIIK_04105 0.33 -1.3 901,207 - rAYT OKGIIK_04105 0.33 -0.6 901,207 - rAYT OKGIIK_04105 0.33 -1.4 901,207 - rAYT OKGIIK_04105 0.33 -0.3 901,207 - rAYT OKGIIK_04105 0.33 -1.4 901,207 - rAYT OKGIIK_04105 0.33 -0.2 901,220 + rAYT OKGIIK_04105 0.36 -0.9 901,220 + rAYT OKGIIK_04105 0.36 -1.3 901,221 - rAYT OKGIIK_04105 0.36 +0.4 901,249 + rAYT OKGIIK_04105 0.42 -0.3 901,250 - rAYT OKGIIK_04105 0.42 -0.9 901,280 + rAYT OKGIIK_04105 0.49 -0.1 901,280 + rAYT OKGIIK_04105 0.49 +0.4 901,281 - rAYT OKGIIK_04105 0.49 -1.3 901,281 - rAYT OKGIIK_04105 0.49 +1.2 901,281 - rAYT OKGIIK_04105 0.49 -1.5 901,281 - rAYT OKGIIK_04105 0.49 +0.4 901,281 - rAYT OKGIIK_04105 0.49 -0.3 901,281 - rAYT OKGIIK_04105 0.49 +0.4 901,281 - rAYT OKGIIK_04105 0.49 -1.3 901,281 - rAYT OKGIIK_04105 0.49 -0.4 901,296 + rAYT OKGIIK_04105 0.52 -2.3 901,296 + rAYT OKGIIK_04105 0.52 -1.0 901,296 + rAYT OKGIIK_04105 0.52 +0.2 901,296 + rAYT OKGIIK_04105 0.52 +0.5 901,296 + rAYT OKGIIK_04105 0.52 +0.2 901,297 - rAYT OKGIIK_04105 0.52 +0.1 901,297 - rAYT OKGIIK_04105 0.52 +1.4 901,297 - rAYT OKGIIK_04105 0.52 -1.9 901,335 - rAYT OKGIIK_04105 0.60 +0.2 901,353 + rAYT OKGIIK_04105 0.64 -0.4 901,353 + rAYT OKGIIK_04105 0.64 +0.5 901,353 + rAYT OKGIIK_04105 0.64 +1.3 901,353 + rAYT OKGIIK_04105 0.64 -2.1 901,353 + rAYT OKGIIK_04105 0.64 -0.6 901,353 + rAYT OKGIIK_04105 0.64 +0.6 901,354 - rAYT OKGIIK_04105 0.64 -1.3 901,354 - rAYT OKGIIK_04105 0.64 +0.2 901,354 - rAYT OKGIIK_04105 0.64 +0.1 901,354 - rAYT OKGIIK_04105 0.64 -0.0 901,383 + rAYT OKGIIK_04105 0.70 +0.1 901,384 - rAYT OKGIIK_04105 0.70 +0.5 901,384 - rAYT OKGIIK_04105 0.70 +0.1 901,384 - rAYT OKGIIK_04105 0.70 -0.2 901,384 - rAYT OKGIIK_04105 0.70 +0.4 901,384 - rAYT OKGIIK_04105 0.70 -1.6 901,404 + rAYT OKGIIK_04105 0.74 -0.3 901,404 + rAYT OKGIIK_04105 0.74 -1.3 901,404 + rAYT OKGIIK_04105 0.74 +0.7 901,404 + rAYT OKGIIK_04105 0.74 +1.7 901,404 + rAYT OKGIIK_04105 0.74 -0.0 901,405 - rAYT OKGIIK_04105 0.75 +0.5 901,405 - rAYT OKGIIK_04105 0.75 +1.4 901,455 + rAYT OKGIIK_04105 0.85 -2.0 901,456 - rAYT OKGIIK_04105 0.85 +0.1 901,456 - rAYT OKGIIK_04105 0.85 -0.1 901,470 + rAYT OKGIIK_04105 0.88 +0.7 901,470 + rAYT OKGIIK_04105 0.88 -1.3 901,471 - rAYT OKGIIK_04105 0.88 -0.7 901,471 - rAYT OKGIIK_04105 0.88 -0.3 901,499 - -0.9 901,499 - +0.7 901,525 - +1.0 901,525 - -1.1 901,525 - -1.3 901,525 - -0.8 901,525 - +1.0 901,525 - +0.1 901,525 - +0.7 901,525 - -0.7
Or see this region's nucleotide sequence