Experiment: R2A_PIPES pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04095 and OKGIIK_04100 are separated by 151 nucleotides OKGIIK_04100 and rAYT are separated by 169 nucleotides rAYT and OKGIIK_04110 overlap by 30 nucleotides
OKGIIK_04095: OKGIIK_04095 - hypothetical protein, at 897,235 to 899,517
_04095
OKGIIK_04100: OKGIIK_04100 - IS4 family transposase, at 899,669 to 900,877
_04100
OKGIIK_04105: rAYT - REP element-mobilizing transposase RayT, at 901,047 to 901,526
rAYT
OKGIIK_04110: OKGIIK_04110 - IS3 family transposase, at 901,497 to 902,315
_04110
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 898.706 kb on + strand, within OKGIIK_04095 at 898.706 kb on + strand, within OKGIIK_04095 at 898.706 kb on + strand, within OKGIIK_04095 at 898.730 kb on + strand, within OKGIIK_04095 at 898.731 kb on - strand, within OKGIIK_04095 at 898.751 kb on + strand, within OKGIIK_04095 at 898.754 kb on + strand, within OKGIIK_04095 at 898.754 kb on + strand, within OKGIIK_04095 at 898.755 kb on - strand, within OKGIIK_04095 at 898.755 kb on - strand, within OKGIIK_04095 at 898.784 kb on + strand, within OKGIIK_04095 at 898.785 kb on - strand, within OKGIIK_04095 at 898.911 kb on + strand, within OKGIIK_04095 at 898.986 kb on + strand, within OKGIIK_04095 at 899.058 kb on + strand, within OKGIIK_04095 at 899.062 kb on - strand, within OKGIIK_04095 at 899.062 kb on - strand, within OKGIIK_04095 at 899.114 kb on + strand, within OKGIIK_04095 at 899.165 kb on + strand, within OKGIIK_04095 at 899.188 kb on - strand, within OKGIIK_04095 at 899.219 kb on + strand, within OKGIIK_04095 at 899.281 kb on - strand, within OKGIIK_04095 at 899.281 kb on - strand, within OKGIIK_04095 at 899.281 kb on - strand, within OKGIIK_04095 at 899.284 kb on + strand, within OKGIIK_04095 at 899.284 kb on + strand, within OKGIIK_04095 at 899.285 kb on - strand, within OKGIIK_04095 at 899.301 kb on + strand at 899.302 kb on - strand at 899.418 kb on + strand at 899.418 kb on + strand at 899.419 kb on - strand at 899.422 kb on + strand at 899.422 kb on + strand at 899.422 kb on + strand at 899.422 kb on + strand at 899.422 kb on + strand at 899.422 kb on + strand at 899.424 kb on + strand at 899.424 kb on + strand at 899.425 kb on - strand at 899.425 kb on - strand at 899.515 kb on + strand at 899.515 kb on + strand at 900.910 kb on + strand at 900.911 kb on - strand at 900.911 kb on - strand at 900.911 kb on - strand at 900.911 kb on - strand at 900.929 kb on + strand at 900.929 kb on + strand at 900.929 kb on + strand at 900.930 kb on - strand at 900.930 kb on - strand at 900.930 kb on - strand at 900.930 kb on - strand at 900.930 kb on - strand at 901.153 kb on - strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.206 kb on + strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.207 kb on - strand, within rAYT at 901.220 kb on + strand, within rAYT at 901.220 kb on + strand, within rAYT at 901.221 kb on - strand, within rAYT at 901.249 kb on + strand, within rAYT at 901.250 kb on - strand, within rAYT at 901.280 kb on + strand, within rAYT at 901.280 kb on + strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.281 kb on - strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.296 kb on + strand, within rAYT at 901.297 kb on - strand, within rAYT at 901.297 kb on - strand, within rAYT at 901.297 kb on - strand, within rAYT at 901.335 kb on - strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.353 kb on + strand, within rAYT at 901.354 kb on - strand, within rAYT at 901.354 kb on - strand, within rAYT at 901.354 kb on - strand, within rAYT at 901.354 kb on - strand, within rAYT at 901.383 kb on + strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.384 kb on - strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.404 kb on + strand, within rAYT at 901.405 kb on - strand, within rAYT at 901.405 kb on - strand, within rAYT at 901.455 kb on + strand, within rAYT at 901.456 kb on - strand, within rAYT at 901.456 kb on - strand, within rAYT at 901.470 kb on + strand, within rAYT at 901.470 kb on + strand, within rAYT at 901.471 kb on - strand, within rAYT at 901.471 kb on - strand, within rAYT at 901.499 kb on - strand at 901.499 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand at 901.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.5 remove 898,706 + OKGIIK_04095 0.64 -1.8 898,706 + OKGIIK_04095 0.64 -1.0 898,706 + OKGIIK_04095 0.64 -0.1 898,730 + OKGIIK_04095 0.65 -1.4 898,731 - OKGIIK_04095 0.66 -0.1 898,751 + OKGIIK_04095 0.66 -0.5 898,754 + OKGIIK_04095 0.67 -1.6 898,754 + OKGIIK_04095 0.67 +1.1 898,755 - OKGIIK_04095 0.67 +1.3 898,755 - OKGIIK_04095 0.67 -3.4 898,784 + OKGIIK_04095 0.68 -1.6 898,785 - OKGIIK_04095 0.68 -0.2 898,911 + OKGIIK_04095 0.73 -1.3 898,986 + OKGIIK_04095 0.77 -0.3 899,058 + OKGIIK_04095 0.80 -0.9 899,062 - OKGIIK_04095 0.80 +1.0 899,062 - OKGIIK_04095 0.80 -1.3 899,114 + OKGIIK_04095 0.82 -1.9 899,165 + OKGIIK_04095 0.85 +0.3 899,188 - OKGIIK_04095 0.86 +0.1 899,219 + OKGIIK_04095 0.87 -0.6 899,281 - OKGIIK_04095 0.90 -1.5 899,281 - OKGIIK_04095 0.90 -1.1 899,281 - OKGIIK_04095 0.90 -0.0 899,284 + OKGIIK_04095 0.90 -0.7 899,284 + OKGIIK_04095 0.90 -0.4 899,285 - OKGIIK_04095 0.90 -2.7 899,301 + -1.3 899,302 - -0.5 899,418 + +0.2 899,418 + +0.5 899,419 - -2.0 899,422 + +0.7 899,422 + -1.1 899,422 + -0.6 899,422 + -0.3 899,422 + -0.3 899,422 + -0.9 899,424 + -0.5 899,424 + -0.9 899,425 - -0.6 899,425 - -0.7 899,515 + -0.2 899,515 + -1.6 900,910 + -2.0 900,911 - -1.8 900,911 - -1.6 900,911 - -0.3 900,911 - +1.5 900,929 + +0.2 900,929 + -1.9 900,929 + +0.5 900,930 - -0.4 900,930 - -1.3 900,930 - +0.7 900,930 - +0.4 900,930 - +0.1 901,153 - rAYT OKGIIK_04105 0.22 -1.1 901,206 + rAYT OKGIIK_04105 0.33 +2.0 901,206 + rAYT OKGIIK_04105 0.33 -0.6 901,206 + rAYT OKGIIK_04105 0.33 -0.6 901,206 + rAYT OKGIIK_04105 0.33 +2.0 901,206 + rAYT OKGIIK_04105 0.33 -1.3 901,206 + rAYT OKGIIK_04105 0.33 -1.7 901,206 + rAYT OKGIIK_04105 0.33 -2.7 901,206 + rAYT OKGIIK_04105 0.33 -2.1 901,206 + rAYT OKGIIK_04105 0.33 +0.5 901,207 - rAYT OKGIIK_04105 0.33 +2.0 901,207 - rAYT OKGIIK_04105 0.33 -1.3 901,207 - rAYT OKGIIK_04105 0.33 -0.6 901,207 - rAYT OKGIIK_04105 0.33 -1.4 901,207 - rAYT OKGIIK_04105 0.33 -0.3 901,207 - rAYT OKGIIK_04105 0.33 -1.4 901,207 - rAYT OKGIIK_04105 0.33 -0.2 901,220 + rAYT OKGIIK_04105 0.36 -0.9 901,220 + rAYT OKGIIK_04105 0.36 -1.3 901,221 - rAYT OKGIIK_04105 0.36 +0.4 901,249 + rAYT OKGIIK_04105 0.42 -0.3 901,250 - rAYT OKGIIK_04105 0.42 -0.9 901,280 + rAYT OKGIIK_04105 0.49 -0.1 901,280 + rAYT OKGIIK_04105 0.49 +0.4 901,281 - rAYT OKGIIK_04105 0.49 -1.3 901,281 - rAYT OKGIIK_04105 0.49 +1.2 901,281 - rAYT OKGIIK_04105 0.49 -1.5 901,281 - rAYT OKGIIK_04105 0.49 +0.4 901,281 - rAYT OKGIIK_04105 0.49 -0.3 901,281 - rAYT OKGIIK_04105 0.49 +0.4 901,281 - rAYT OKGIIK_04105 0.49 -1.3 901,281 - rAYT OKGIIK_04105 0.49 -0.4 901,296 + rAYT OKGIIK_04105 0.52 -2.3 901,296 + rAYT OKGIIK_04105 0.52 -1.0 901,296 + rAYT OKGIIK_04105 0.52 +0.2 901,296 + rAYT OKGIIK_04105 0.52 +0.5 901,296 + rAYT OKGIIK_04105 0.52 +0.2 901,297 - rAYT OKGIIK_04105 0.52 +0.1 901,297 - rAYT OKGIIK_04105 0.52 +1.4 901,297 - rAYT OKGIIK_04105 0.52 -1.9 901,335 - rAYT OKGIIK_04105 0.60 +0.2 901,353 + rAYT OKGIIK_04105 0.64 -0.4 901,353 + rAYT OKGIIK_04105 0.64 +0.5 901,353 + rAYT OKGIIK_04105 0.64 +1.3 901,353 + rAYT OKGIIK_04105 0.64 -2.1 901,353 + rAYT OKGIIK_04105 0.64 -0.6 901,353 + rAYT OKGIIK_04105 0.64 +0.6 901,354 - rAYT OKGIIK_04105 0.64 -1.3 901,354 - rAYT OKGIIK_04105 0.64 +0.2 901,354 - rAYT OKGIIK_04105 0.64 +0.1 901,354 - rAYT OKGIIK_04105 0.64 -0.0 901,383 + rAYT OKGIIK_04105 0.70 +0.1 901,384 - rAYT OKGIIK_04105 0.70 +0.5 901,384 - rAYT OKGIIK_04105 0.70 +0.1 901,384 - rAYT OKGIIK_04105 0.70 -0.2 901,384 - rAYT OKGIIK_04105 0.70 +0.4 901,384 - rAYT OKGIIK_04105 0.70 -1.6 901,404 + rAYT OKGIIK_04105 0.74 -0.3 901,404 + rAYT OKGIIK_04105 0.74 -1.3 901,404 + rAYT OKGIIK_04105 0.74 +0.7 901,404 + rAYT OKGIIK_04105 0.74 +1.7 901,404 + rAYT OKGIIK_04105 0.74 -0.0 901,405 - rAYT OKGIIK_04105 0.75 +0.5 901,405 - rAYT OKGIIK_04105 0.75 +1.4 901,455 + rAYT OKGIIK_04105 0.85 -2.0 901,456 - rAYT OKGIIK_04105 0.85 +0.1 901,456 - rAYT OKGIIK_04105 0.85 -0.1 901,470 + rAYT OKGIIK_04105 0.88 +0.7 901,470 + rAYT OKGIIK_04105 0.88 -1.3 901,471 - rAYT OKGIIK_04105 0.88 -0.7 901,471 - rAYT OKGIIK_04105 0.88 -0.3 901,499 - -0.9 901,499 - +0.7 901,525 - +1.0 901,525 - -1.1 901,525 - -1.3 901,525 - -0.8 901,525 - +1.0 901,525 - +0.1 901,525 - +0.7 901,525 - -0.7
Or see this region's nucleotide sequence