Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4872 and GFF4873 are separated by 126 nucleotides GFF4873 and GFF4874 are separated by 12 nucleotides GFF4874 and GFF4875 are separated by 56 nucleotides
GFF4872 - 6,7-dimethyl-8-ribityllumazine synthase, at 144,790 to 145,299
GFF4872
GFF4873 - Succinylglutamate desuccinylase, at 145,426 to 146,433
GFF4873
GFF4874 - hypothetical protein, at 146,446 to 146,736
GFF4874
GFF4875 - N-succinylarginine dihydrolase, at 146,793 to 148,139
GFF4875
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.553 kb on + strand at 144.570 kb on + strand at 144.570 kb on + strand at 144.570 kb on + strand at 144.571 kb on - strand at 144.571 kb on - strand at 144.572 kb on + strand at 144.662 kb on + strand at 144.662 kb on + strand at 144.663 kb on - strand at 144.663 kb on - strand at 144.754 kb on + strand at 144.755 kb on - strand at 145.057 kb on + strand, within GFF4872 at 145.058 kb on - strand, within GFF4872 at 145.058 kb on - strand, within GFF4872 at 145.289 kb on + strand at 145.305 kb on - strand at 145.305 kb on - strand at 145.305 kb on - strand at 145.305 kb on - strand at 145.305 kb on - strand at 145.568 kb on + strand, within GFF4873 at 145.568 kb on + strand, within GFF4873 at 145.568 kb on + strand, within GFF4873 at 145.569 kb on - strand, within GFF4873 at 145.823 kb on + strand, within GFF4873 at 145.823 kb on + strand, within GFF4873 at 145.824 kb on - strand, within GFF4873 at 145.830 kb on - strand, within GFF4873 at 145.991 kb on + strand, within GFF4873 at 145.992 kb on - strand, within GFF4873 at 146.320 kb on + strand, within GFF4873 at 146.434 kb on - strand at 146.434 kb on - strand at 146.434 kb on - strand at 146.476 kb on + strand, within GFF4874 at 146.476 kb on + strand, within GFF4874 at 146.477 kb on - strand, within GFF4874 at 146.530 kb on + strand, within GFF4874 at 146.570 kb on + strand, within GFF4874 at 146.570 kb on + strand, within GFF4874 at 146.570 kb on + strand, within GFF4874 at 146.571 kb on - strand, within GFF4874 at 146.742 kb on + strand at 146.812 kb on + strand at 146.828 kb on + strand at 146.950 kb on + strand, within GFF4875 at 146.950 kb on + strand, within GFF4875 at 146.951 kb on - strand, within GFF4875 at 146.951 kb on - strand, within GFF4875 at 146.951 kb on - strand, within GFF4875 at 147.122 kb on - strand, within GFF4875 at 147.214 kb on + strand, within GFF4875 at 147.214 kb on + strand, within GFF4875 at 147.214 kb on + strand, within GFF4875 at 147.215 kb on - strand, within GFF4875 at 147.215 kb on - strand, within GFF4875 at 147.215 kb on - strand, within GFF4875 at 147.215 kb on - strand, within GFF4875 at 147.215 kb on - strand, within GFF4875 at 147.349 kb on + strand, within GFF4875 at 147.349 kb on + strand, within GFF4875 at 147.350 kb on - strand, within GFF4875
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 144,553 + -1.0 144,570 + +0.7 144,570 + -1.0 144,570 + +0.2 144,571 - -1.2 144,571 - -0.3 144,572 + +0.4 144,662 + -0.6 144,662 + -0.7 144,663 - +0.8 144,663 - +0.1 144,754 + +0.1 144,755 - -0.4 145,057 + GFF4872 0.52 -1.1 145,058 - GFF4872 0.53 +0.6 145,058 - GFF4872 0.53 +0.2 145,289 + +0.8 145,305 - +0.3 145,305 - -0.5 145,305 - -0.1 145,305 - +0.6 145,305 - -1.0 145,568 + GFF4873 0.14 -0.4 145,568 + GFF4873 0.14 -2.0 145,568 + GFF4873 0.14 -0.2 145,569 - GFF4873 0.14 +0.7 145,823 + GFF4873 0.39 +0.2 145,823 + GFF4873 0.39 -0.4 145,824 - GFF4873 0.39 -0.2 145,830 - GFF4873 0.40 -1.7 145,991 + GFF4873 0.56 -1.2 145,992 - GFF4873 0.56 -1.6 146,320 + GFF4873 0.89 -0.7 146,434 - +0.2 146,434 - -0.0 146,434 - +0.2 146,476 + GFF4874 0.10 -0.1 146,476 + GFF4874 0.10 -0.5 146,477 - GFF4874 0.11 -2.3 146,530 + GFF4874 0.29 -0.8 146,570 + GFF4874 0.43 +0.2 146,570 + GFF4874 0.43 +0.1 146,570 + GFF4874 0.43 -0.4 146,571 - GFF4874 0.43 -1.1 146,742 + -0.2 146,812 + +1.0 146,828 + -0.5 146,950 + GFF4875 0.12 +0.6 146,950 + GFF4875 0.12 +1.2 146,951 - GFF4875 0.12 -1.2 146,951 - GFF4875 0.12 +0.2 146,951 - GFF4875 0.12 -0.3 147,122 - GFF4875 0.24 +0.6 147,214 + GFF4875 0.31 +2.2 147,214 + GFF4875 0.31 -0.8 147,214 + GFF4875 0.31 -0.4 147,215 - GFF4875 0.31 +0.3 147,215 - GFF4875 0.31 -0.2 147,215 - GFF4875 0.31 +0.1 147,215 - GFF4875 0.31 -0.9 147,215 - GFF4875 0.31 +0.4 147,349 + GFF4875 0.41 +0.8 147,349 + GFF4875 0.41 -0.3 147,350 - GFF4875 0.41 -0.7
Or see this region's nucleotide sequence