Strain Fitness in Pseudomonas sp. DMC3 around GFF3062

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3061 and GFF3062 are separated by 10 nucleotidesGFF3062 and GFF3063 are separated by 241 nucleotides GFF3061 - Imidazolonepropionase, at 93 to 1,298 GFF3061 GFF3062 - hypothetical protein, at 1,309 to 2,112 GFF3062 GFF3063 - Proline iminopeptidase, at 2,354 to 3,325 GFF3063 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 0.354 kb on + strand, within GFF3061at 0.354 kb on + strand, within GFF3061at 0.355 kb on - strand, within GFF3061at 0.355 kb on - strand, within GFF3061at 0.621 kb on + strand, within GFF3061at 0.621 kb on + strand, within GFF3061at 0.623 kb on + strand, within GFF3061at 0.624 kb on - strand, within GFF3061at 0.624 kb on - strand, within GFF3061at 0.624 kb on - strand, within GFF3061at 0.624 kb on - strand, within GFF3061at 0.642 kb on + strand, within GFF3061at 0.643 kb on - strand, within GFF3061at 0.643 kb on - strand, within GFF3061at 0.643 kb on - strand, within GFF3061at 0.723 kb on + strand, within GFF3061at 0.724 kb on - strand, within GFF3061at 0.846 kb on + strand, within GFF3061at 0.871 kb on + strand, within GFF3061at 0.948 kb on + strand, within GFF3061at 0.948 kb on + strand, within GFF3061at 0.949 kb on - strand, within GFF3061at 1.082 kb on + strand, within GFF3061at 1.083 kb on - strand, within GFF3061at 1.236 kb on + strandat 1.237 kb on - strandat 1.296 kb on + strandat 1.296 kb on + strandat 1.446 kb on + strand, within GFF3062at 1.446 kb on + strand, within GFF3062at 1.505 kb on - strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.556 kb on - strand, within GFF3062at 1.556 kb on - strand, within GFF3062at 1.579 kb on + strand, within GFF3062at 1.580 kb on - strand, within GFF3062at 1.580 kb on - strand, within GFF3062at 1.603 kb on - strand, within GFF3062at 1.655 kb on - strand, within GFF3062at 1.887 kb on + strand, within GFF3062at 1.887 kb on + strand, within GFF3062at 1.887 kb on + strand, within GFF3062at 1.888 kb on - strand, within GFF3062at 1.993 kb on + strand, within GFF3062at 1.993 kb on + strand, within GFF3062at 1.993 kb on + strand, within GFF3062at 1.993 kb on + strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 2.286 kb on + strandat 2.287 kb on - strandat 2.287 kb on - strandat 2.287 kb on - strandat 2.287 kb on - strandat 2.287 kb on - strandat 2.306 kb on + strandat 2.306 kb on + strandat 2.309 kb on + strandat 2.310 kb on - strandat 2.419 kb on + strandat 2.420 kb on - strandat 2.420 kb on - strandat 2.426 kb on + strandat 2.426 kb on + strandat 2.427 kb on - strandat 2.457 kb on + strand, within GFF3063at 2.517 kb on - strand, within GFF3063at 2.792 kb on + strand, within GFF3063at 2.792 kb on + strand, within GFF3063at 2.792 kb on + strand, within GFF3063at 2.792 kb on + strand, within GFF3063at 2.792 kb on + strand, within GFF3063at 2.793 kb on - strand, within GFF3063at 2.793 kb on - strand, within GFF3063at 2.793 kb on - strand, within GFF3063at 2.793 kb on - strand, within GFF3063at 2.825 kb on + strand, within GFF3063at 2.825 kb on + strand, within GFF3063at 2.837 kb on + strand, within GFF3063at 2.838 kb on - strand, within GFF3063at 2.838 kb on - strand, within GFF3063at 2.838 kb on - strand, within GFF3063at 2.838 kb on - strand, within GFF3063at 2.838 kb on - strand, within GFF3063at 2.838 kb on - strand, within GFF3063at 2.838 kb on - strand, within GFF3063at 3.050 kb on + strand, within GFF3063at 3.050 kb on + strand, within GFF3063at 3.050 kb on + strand, within GFF3063at 3.051 kb on - strand, within GFF3063at 3.051 kb on - strand, within GFF3063at 3.051 kb on - strand, within GFF3063at 3.051 kb on - strand, within GFF3063at 3.051 kb on - strand, within GFF3063

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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354 + GFF3061 0.22 +0.9
354 + GFF3061 0.22 -0.0
355 - GFF3061 0.22 +0.6
355 - GFF3061 0.22 -0.7
621 + GFF3061 0.44 -0.1
621 + GFF3061 0.44 -1.0
623 + GFF3061 0.44 -1.4
624 - GFF3061 0.44 -0.1
624 - GFF3061 0.44 -0.1
624 - GFF3061 0.44 +0.3
624 - GFF3061 0.44 -0.9
642 + GFF3061 0.46 -0.4
643 - GFF3061 0.46 -0.2
643 - GFF3061 0.46 -0.4
643 - GFF3061 0.46 +0.2
723 + GFF3061 0.52 -2.2
724 - GFF3061 0.52 -0.4
846 + GFF3061 0.62 -0.4
871 + GFF3061 0.65 -0.2
948 + GFF3061 0.71 -0.1
948 + GFF3061 0.71 -0.3
949 - GFF3061 0.71 -1.1
1,082 + GFF3061 0.82 -0.2
1,083 - GFF3061 0.82 +0.2
1,236 + -2.0
1,237 - +0.2
1,296 + -0.8
1,296 + -1.2
1,446 + GFF3062 0.17 +0.5
1,446 + GFF3062 0.17 -0.5
1,505 - GFF3062 0.24 -0.8
1,555 + GFF3062 0.31 +0.3
1,555 + GFF3062 0.31 -1.4
1,555 + GFF3062 0.31 -2.2
1,555 + GFF3062 0.31 -0.4
1,555 + GFF3062 0.31 -0.1
1,555 + GFF3062 0.31 +0.5
1,555 + GFF3062 0.31 -0.1
1,556 - GFF3062 0.31 +0.1
1,556 - GFF3062 0.31 +0.9
1,579 + GFF3062 0.34 -0.5
1,580 - GFF3062 0.34 -1.3
1,580 - GFF3062 0.34 +0.8
1,603 - GFF3062 0.37 -0.3
1,655 - GFF3062 0.43 +0.2
1,887 + GFF3062 0.72 +0.2
1,887 + GFF3062 0.72 -0.2
1,887 + GFF3062 0.72 +0.0
1,888 - GFF3062 0.72 -0.5
1,993 + GFF3062 0.85 +0.7
1,993 + GFF3062 0.85 -1.1
1,993 + GFF3062 0.85 -0.4
1,993 + GFF3062 0.85 +0.1
1,994 - GFF3062 0.85 -0.4
1,994 - GFF3062 0.85 -0.1
1,994 - GFF3062 0.85 +0.3
1,994 - GFF3062 0.85 -0.2
1,994 - GFF3062 0.85 +1.4
1,994 - GFF3062 0.85 +0.6
2,286 + -0.4
2,287 - -0.5
2,287 - -0.6
2,287 - -0.2
2,287 - -0.4
2,287 - +0.6
2,306 + -0.0
2,306 + -0.5
2,309 + +0.2
2,310 - -0.0
2,419 + +0.3
2,420 - +0.2
2,420 - +0.2
2,426 + +1.0
2,426 + +0.2
2,427 - -2.0
2,457 + GFF3063 0.11 -1.4
2,517 - GFF3063 0.17 -0.9
2,792 + GFF3063 0.45 -0.9
2,792 + GFF3063 0.45 +0.3
2,792 + GFF3063 0.45 +0.5
2,792 + GFF3063 0.45 -1.3
2,792 + GFF3063 0.45 +0.9
2,793 - GFF3063 0.45 -0.2
2,793 - GFF3063 0.45 -1.2
2,793 - GFF3063 0.45 -0.3
2,793 - GFF3063 0.45 -1.3
2,825 + GFF3063 0.48 +0.8
2,825 + GFF3063 0.48 -0.3
2,837 + GFF3063 0.50 +0.2
2,838 - GFF3063 0.50 +0.7
2,838 - GFF3063 0.50 -0.6
2,838 - GFF3063 0.50 +0.2
2,838 - GFF3063 0.50 -0.8
2,838 - GFF3063 0.50 -0.6
2,838 - GFF3063 0.50 +0.2
2,838 - GFF3063 0.50 +0.1
3,050 + GFF3063 0.72 +1.6
3,050 + GFF3063 0.72 +0.5
3,050 + GFF3063 0.72 -0.1
3,051 - GFF3063 0.72 -1.9
3,051 - GFF3063 0.72 +0.7
3,051 - GFF3063 0.72 -0.2
3,051 - GFF3063 0.72 +0.9
3,051 - GFF3063 0.72 +0.4

Or see this region's nucleotide sequence