Strain Fitness in Pseudomonas sp. DMC3 around GFF2444

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2442 and GFF2443 are separated by 129 nucleotidesGFF2443 and GFF2444 are separated by 11 nucleotidesGFF2444 and GFF2445 are separated by 172 nucleotides GFF2442 - B-type flagellar hook-associated protein 2, at 231,265 to 232,719 GFF2442 GFF2443 - Flagellar secretion chaperone FliS, at 232,849 to 233,247 GFF2443 GFF2444 - hypothetical protein, at 233,259 to 233,555 GFF2444 GFF2445 - Anaerobic nitric oxide reductase transcription regulator NorR, at 233,728 to 235,203 GFF2445 Position (kb) 233 234Strain fitness (log2 ratio) -1 0 1 2at 232.471 kb on + strand, within GFF2442at 232.556 kb on + strand, within GFF2442at 232.556 kb on + strand, within GFF2442at 232.557 kb on - strand, within GFF2442at 232.621 kb on + strandat 232.717 kb on + strandat 232.717 kb on + strandat 232.718 kb on - strandat 232.809 kb on + strandat 232.820 kb on + strandat 232.820 kb on + strandat 232.821 kb on - strandat 232.821 kb on - strandat 232.844 kb on - strandat 232.844 kb on - strandat 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.111 kb on - strand, within GFF2443at 233.111 kb on - strand, within GFF2443at 233.111 kb on - strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.198 kb on + strand, within GFF2443at 233.269 kb on + strandat 233.269 kb on + strandat 233.269 kb on + strandat 233.270 kb on - strandat 233.270 kb on - strandat 233.270 kb on - strandat 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.445 kb on + strand, within GFF2444at 233.538 kb on + strandat 233.568 kb on + strandat 233.618 kb on - strandat 233.622 kb on - strandat 233.622 kb on - strandat 233.629 kb on - strandat 233.629 kb on - strandat 233.629 kb on - strandat 233.631 kb on + strandat 233.632 kb on - strandat 233.688 kb on - strandat 233.722 kb on + strandat 233.722 kb on + strandat 233.722 kb on + strandat 233.723 kb on - strandat 233.723 kb on - strandat 233.723 kb on - strandat 233.871 kb on + strandat 233.891 kb on + strand, within GFF2445at 233.892 kb on - strand, within GFF2445at 233.892 kb on - strand, within GFF2445at 233.936 kb on + strand, within GFF2445at 233.989 kb on - strand, within GFF2445at 234.097 kb on + strand, within GFF2445at 234.097 kb on + strand, within GFF2445at 234.098 kb on - strand, within GFF2445at 234.098 kb on - strand, within GFF2445at 234.098 kb on - strand, within GFF2445at 234.109 kb on + strand, within GFF2445at 234.109 kb on + strand, within GFF2445at 234.109 kb on + strand, within GFF2445at 234.236 kb on + strand, within GFF2445at 234.236 kb on + strand, within GFF2445at 234.237 kb on - strand, within GFF2445at 234.237 kb on - strand, within GFF2445at 234.292 kb on + strand, within GFF2445at 234.292 kb on + strand, within GFF2445at 234.293 kb on - strand, within GFF2445at 234.293 kb on - strand, within GFF2445at 234.293 kb on - strand, within GFF2445at 234.475 kb on - strand, within GFF2445at 234.510 kb on - strand, within GFF2445

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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232,471 + GFF2442 0.83 +1.6
232,556 + GFF2442 0.89 +1.1
232,556 + GFF2442 0.89 +0.0
232,557 - GFF2442 0.89 +1.0
232,621 + +0.6
232,717 + +0.1
232,717 + +0.1
232,718 - -0.8
232,809 + -1.2
232,820 + -1.4
232,820 + +0.9
232,821 - +0.7
232,821 - +0.2
232,844 - +1.6
232,844 - +0.9
233,110 + GFF2443 0.65 -0.2
233,110 + GFF2443 0.65 +0.3
233,110 + GFF2443 0.65 +0.2
233,110 + GFF2443 0.65 +0.3
233,110 + GFF2443 0.65 +0.8
233,111 - GFF2443 0.66 +0.9
233,111 - GFF2443 0.66 -1.2
233,111 - GFF2443 0.66 +1.2
233,116 + GFF2443 0.67 -0.0
233,116 + GFF2443 0.67 +1.0
233,116 + GFF2443 0.67 +1.6
233,116 + GFF2443 0.67 -0.1
233,116 + GFF2443 0.67 -0.0
233,116 + GFF2443 0.67 +0.2
233,116 + GFF2443 0.67 -0.5
233,116 + GFF2443 0.67 -0.8
233,116 + GFF2443 0.67 +0.9
233,116 + GFF2443 0.67 +0.1
233,116 + GFF2443 0.67 -0.0
233,116 + GFF2443 0.67 -0.0
233,117 - GFF2443 0.67 -0.8
233,117 - GFF2443 0.67 +0.8
233,117 - GFF2443 0.67 +1.1
233,117 - GFF2443 0.67 +0.7
233,117 - GFF2443 0.67 +0.6
233,117 - GFF2443 0.67 +0.4
233,117 - GFF2443 0.67 +0.7
233,117 - GFF2443 0.67 +0.2
233,198 + GFF2443 0.87 -0.6
233,269 + +0.3
233,269 + -0.2
233,269 + +0.6
233,270 - +0.3
233,270 - +0.1
233,270 - -0.0
233,437 + GFF2444 0.60 -0.9
233,437 + GFF2444 0.60 +0.3
233,437 + GFF2444 0.60 +0.5
233,437 + GFF2444 0.60 -0.8
233,437 + GFF2444 0.60 +0.5
233,437 + GFF2444 0.60 -0.2
233,437 + GFF2444 0.60 +0.7
233,437 + GFF2444 0.60 -0.2
233,437 + GFF2444 0.60 -0.6
233,437 + GFF2444 0.60 +0.6
233,438 - GFF2444 0.60 +0.1
233,438 - GFF2444 0.60 +0.8
233,438 - GFF2444 0.60 +0.5
233,438 - GFF2444 0.60 +0.2
233,438 - GFF2444 0.60 +0.0
233,438 - GFF2444 0.60 +0.5
233,438 - GFF2444 0.60 -1.1
233,438 - GFF2444 0.60 -0.4
233,438 - GFF2444 0.60 +0.6
233,438 - GFF2444 0.60 +0.4
233,445 + GFF2444 0.63 +0.8
233,538 + -0.4
233,568 + +0.6
233,618 - +1.2
233,622 - +0.5
233,622 - +0.7
233,629 - +1.2
233,629 - +1.2
233,629 - +1.0
233,631 + -0.0
233,632 - +0.8
233,688 - +1.3
233,722 + +1.7
233,722 + +1.2
233,722 + +1.4
233,723 - +1.3
233,723 - +1.6
233,723 - +0.9
233,871 + +1.1
233,891 + GFF2445 0.11 -0.3
233,892 - GFF2445 0.11 +1.8
233,892 - GFF2445 0.11 +1.5
233,936 + GFF2445 0.14 +0.4
233,989 - GFF2445 0.18 +1.1
234,097 + GFF2445 0.25 +0.8
234,097 + GFF2445 0.25 +0.4
234,098 - GFF2445 0.25 +1.1
234,098 - GFF2445 0.25 +1.2
234,098 - GFF2445 0.25 +0.5
234,109 + GFF2445 0.26 +1.2
234,109 + GFF2445 0.26 +1.2
234,109 + GFF2445 0.26 +1.7
234,236 + GFF2445 0.34 +1.1
234,236 + GFF2445 0.34 +1.3
234,237 - GFF2445 0.34 +0.1
234,237 - GFF2445 0.34 +1.9
234,292 + GFF2445 0.38 +0.9
234,292 + GFF2445 0.38 +1.2
234,293 - GFF2445 0.38 +1.0
234,293 - GFF2445 0.38 +0.9
234,293 - GFF2445 0.38 +1.5
234,475 - GFF2445 0.51 +2.2
234,510 - GFF2445 0.53 +1.0

Or see this region's nucleotide sequence