Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2089 and GFF2090 are separated by 152 nucleotides GFF2090 and GFF2091 overlap by 4 nucleotides GFF2091 and GFF2092 overlap by 1 nucleotides GFF2092 and GFF2093 are separated by 66 nucleotides GFF2093 and GFF2094 overlap by 4 nucleotides GFF2094 and GFF2095 are separated by 130 nucleotides
GFF2089 - hypothetical protein, at 339,938 to 340,276
GFF2089
GFF2090 - hypothetical protein, at 340,429 to 341,013
GFF2090
GFF2091 - hypothetical protein, at 341,010 to 341,192
GFF2091
GFF2092 - hypothetical protein, at 341,192 to 342,688
GFF2092
GFF2093 - hypothetical protein, at 342,755 to 343,102
GFF2093
GFF2094 - hypothetical protein, at 343,099 to 343,395
GFF2094
GFF2095 - hypothetical protein, at 343,526 to 345,292
GFF2095
Position (kb) 341
342
343 Strain fitness (log2 ratio) -1
0
1
2 at 340.215 kb on - strand, within GFF2089 at 340.231 kb on + strand, within GFF2089 at 340.231 kb on + strand, within GFF2089 at 340.231 kb on + strand, within GFF2089 at 340.232 kb on - strand, within GFF2089 at 340.232 kb on - strand, within GFF2089 at 340.274 kb on + strand at 340.274 kb on + strand at 340.275 kb on - strand at 340.275 kb on - strand at 340.278 kb on + strand at 340.282 kb on + strand at 340.288 kb on + strand at 340.289 kb on - strand at 340.294 kb on + strand at 340.294 kb on + strand at 340.353 kb on - strand at 340.412 kb on + strand at 340.413 kb on - strand at 340.413 kb on - strand at 340.662 kb on + strand, within GFF2090 at 340.662 kb on + strand, within GFF2090 at 340.741 kb on + strand, within GFF2090 at 340.801 kb on + strand, within GFF2090 at 340.801 kb on + strand, within GFF2090 at 340.802 kb on - strand, within GFF2090 at 341.003 kb on + strand at 341.003 kb on + strand at 341.004 kb on - strand at 341.004 kb on - strand at 341.004 kb on - strand at 341.004 kb on - strand at 341.029 kb on + strand, within GFF2091 at 341.190 kb on + strand at 341.190 kb on + strand at 341.190 kb on + strand at 341.190 kb on + strand at 341.417 kb on + strand, within GFF2092 at 341.417 kb on + strand, within GFF2092 at 341.417 kb on + strand, within GFF2092 at 341.418 kb on - strand, within GFF2092 at 341.418 kb on - strand, within GFF2092 at 341.550 kb on - strand, within GFF2092 at 341.979 kb on - strand, within GFF2092 at 342.236 kb on + strand, within GFF2092 at 342.236 kb on + strand, within GFF2092 at 342.237 kb on - strand, within GFF2092 at 342.237 kb on - strand, within GFF2092 at 342.237 kb on - strand, within GFF2092 at 342.237 kb on - strand, within GFF2092 at 342.257 kb on + strand, within GFF2092 at 342.258 kb on - strand, within GFF2092 at 342.258 kb on - strand, within GFF2092 at 342.299 kb on + strand, within GFF2092 at 342.300 kb on - strand, within GFF2092 at 342.300 kb on - strand, within GFF2092 at 342.315 kb on - strand, within GFF2092 at 342.315 kb on - strand, within GFF2092 at 342.335 kb on + strand, within GFF2092 at 342.336 kb on - strand, within GFF2092 at 342.336 kb on - strand, within GFF2092 at 342.408 kb on - strand, within GFF2092 at 342.503 kb on + strand, within GFF2092 at 342.504 kb on - strand, within GFF2092 at 342.620 kb on + strand at 342.620 kb on + strand at 342.621 kb on - strand at 342.671 kb on + strand at 342.735 kb on + strand at 342.782 kb on + strand at 342.782 kb on + strand at 342.782 kb on + strand at 342.782 kb on + strand at 342.783 kb on - strand at 342.875 kb on + strand, within GFF2093 at 342.875 kb on + strand, within GFF2093 at 342.875 kb on + strand, within GFF2093 at 342.876 kb on - strand, within GFF2093 at 342.964 kb on + strand, within GFF2093 at 342.965 kb on - strand, within GFF2093 at 343.001 kb on + strand, within GFF2093 at 343.001 kb on + strand, within GFF2093 at 343.002 kb on - strand, within GFF2093 at 343.124 kb on + strand at 343.124 kb on + strand at 343.124 kb on + strand at 343.125 kb on - strand at 343.125 kb on - strand at 343.213 kb on + strand, within GFF2094 at 343.267 kb on + strand, within GFF2094 at 343.267 kb on + strand, within GFF2094 at 343.267 kb on + strand, within GFF2094 at 343.268 kb on - strand, within GFF2094 at 343.268 kb on - strand, within GFF2094 at 343.268 kb on - strand, within GFF2094 at 343.408 kb on - strand at 343.408 kb on - strand at 343.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 340,215 - GFF2089 0.82 -0.2 340,231 + GFF2089 0.86 -0.0 340,231 + GFF2089 0.86 +0.8 340,231 + GFF2089 0.86 -0.6 340,232 - GFF2089 0.87 -0.4 340,232 - GFF2089 0.87 +0.2 340,274 + +0.0 340,274 + +1.1 340,275 - +0.3 340,275 - +1.2 340,278 + -0.2 340,282 + -1.3 340,288 + -0.1 340,289 - -1.2 340,294 + +0.3 340,294 + -0.5 340,353 - +0.4 340,412 + +0.4 340,413 - -0.4 340,413 - -1.5 340,662 + GFF2090 0.40 +0.3 340,662 + GFF2090 0.40 +0.3 340,741 + GFF2090 0.53 +0.1 340,801 + GFF2090 0.64 -0.3 340,801 + GFF2090 0.64 +0.0 340,802 - GFF2090 0.64 +0.2 341,003 + +0.4 341,003 + -0.0 341,004 - +0.1 341,004 - -0.3 341,004 - -0.6 341,004 - +0.2 341,029 + GFF2091 0.10 +0.2 341,190 + +2.6 341,190 + -0.3 341,190 + -0.7 341,190 + +0.0 341,417 + GFF2092 0.15 +0.0 341,417 + GFF2092 0.15 +0.3 341,417 + GFF2092 0.15 -0.1 341,418 - GFF2092 0.15 -0.1 341,418 - GFF2092 0.15 +0.0 341,550 - GFF2092 0.24 +1.0 341,979 - GFF2092 0.53 +0.0 342,236 + GFF2092 0.70 -0.2 342,236 + GFF2092 0.70 -0.5 342,237 - GFF2092 0.70 +1.0 342,237 - GFF2092 0.70 -1.3 342,237 - GFF2092 0.70 -1.1 342,237 - GFF2092 0.70 +0.9 342,257 + GFF2092 0.71 +1.0 342,258 - GFF2092 0.71 +0.1 342,258 - GFF2092 0.71 -0.7 342,299 + GFF2092 0.74 +0.5 342,300 - GFF2092 0.74 +0.3 342,300 - GFF2092 0.74 +0.2 342,315 - GFF2092 0.75 -0.2 342,315 - GFF2092 0.75 -0.5 342,335 + GFF2092 0.76 +0.5 342,336 - GFF2092 0.76 -0.4 342,336 - GFF2092 0.76 -0.0 342,408 - GFF2092 0.81 +0.6 342,503 + GFF2092 0.88 +0.3 342,504 - GFF2092 0.88 +0.4 342,620 + -0.8 342,620 + -0.0 342,621 - +1.0 342,671 + +0.0 342,735 + +0.2 342,782 + +0.2 342,782 + +0.5 342,782 + -0.2 342,782 + +1.0 342,783 - -0.5 342,875 + GFF2093 0.34 +0.4 342,875 + GFF2093 0.34 -0.0 342,875 + GFF2093 0.34 +1.1 342,876 - GFF2093 0.35 +0.3 342,964 + GFF2093 0.60 -0.4 342,965 - GFF2093 0.60 +0.9 343,001 + GFF2093 0.71 -1.0 343,001 + GFF2093 0.71 +0.1 343,002 - GFF2093 0.71 +0.2 343,124 + +0.0 343,124 + -0.1 343,124 + -0.5 343,125 - -0.1 343,125 - -0.5 343,213 + GFF2094 0.38 +0.6 343,267 + GFF2094 0.57 +0.5 343,267 + GFF2094 0.57 +0.2 343,267 + GFF2094 0.57 +1.4 343,268 - GFF2094 0.57 +0.0 343,268 - GFF2094 0.57 +0.6 343,268 - GFF2094 0.57 -1.5 343,408 - +0.0 343,408 - +2.0 343,627 + -0.4
Or see this region's nucleotide sequence