Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2059 and GFF2060 are separated by 55 nucleotides GFF2060 and GFF2061 are separated by 74 nucleotides
GFF2059 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 304,628 to 305,818
GFF2059
GFF2060 - Regulator of sigma-E protease RseP, at 305,874 to 307,226
GFF2060
GFF2061 - Outer membrane protein assembly factor BamA, at 307,301 to 309,676
GFF2061
Position (kb) 305
306
307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 305.871 kb on + strand at 305.871 kb on + strand at 305.871 kb on + strand at 305.872 kb on - strand at 305.872 kb on - strand at 305.886 kb on + strand at 305.886 kb on + strand at 305.886 kb on + strand at 305.886 kb on + strand at 305.886 kb on + strand at 305.886 kb on + strand at 305.886 kb on + strand at 305.886 kb on + strand at 305.887 kb on - strand at 305.888 kb on + strand at 305.888 kb on + strand at 305.889 kb on - strand at 305.889 kb on - strand at 305.889 kb on - strand at 305.889 kb on - strand at 306.076 kb on - strand, within GFF2060 at 306.161 kb on + strand, within GFF2060 at 306.191 kb on + strand, within GFF2060 at 306.192 kb on - strand, within GFF2060 at 306.476 kb on - strand, within GFF2060 at 306.476 kb on - strand, within GFF2060 at 306.668 kb on + strand, within GFF2060 at 306.668 kb on + strand, within GFF2060 at 306.668 kb on + strand, within GFF2060 at 306.834 kb on + strand, within GFF2060 at 306.834 kb on + strand, within GFF2060 at 306.968 kb on + strand, within GFF2060 at 307.026 kb on + strand, within GFF2060 at 307.034 kb on + strand, within GFF2060 at 307.037 kb on + strand, within GFF2060 at 307.072 kb on + strand, within GFF2060 at 307.098 kb on + strand at 307.224 kb on + strand at 307.287 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 305,871 + -0.1 305,871 + +0.3 305,871 + -1.8 305,872 - -0.2 305,872 - +0.4 305,886 + +0.6 305,886 + +0.1 305,886 + +0.3 305,886 + +0.1 305,886 + -0.1 305,886 + +0.3 305,886 + -1.0 305,886 + -0.7 305,887 - +0.0 305,888 + -0.2 305,888 + -0.2 305,889 - -1.8 305,889 - -0.4 305,889 - -0.1 305,889 - -1.6 306,076 - GFF2060 0.15 +0.3 306,161 + GFF2060 0.21 -0.2 306,191 + GFF2060 0.23 -0.9 306,192 - GFF2060 0.24 -0.2 306,476 - GFF2060 0.44 -0.1 306,476 - GFF2060 0.44 -0.6 306,668 + GFF2060 0.59 -0.0 306,668 + GFF2060 0.59 -1.1 306,668 + GFF2060 0.59 -0.7 306,834 + GFF2060 0.71 -1.4 306,834 + GFF2060 0.71 -0.5 306,968 + GFF2060 0.81 -0.5 307,026 + GFF2060 0.85 -1.0 307,034 + GFF2060 0.86 +0.1 307,037 + GFF2060 0.86 -0.4 307,072 + GFF2060 0.89 -0.1 307,098 + +0.6 307,224 + -1.8 307,287 + -0.6
Or see this region's nucleotide sequence