Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2030 and GFF2031 are separated by 92 nucleotides GFF2031 and GFF2032 are separated by 98 nucleotides GFF2032 and GFF2033 are separated by 94 nucleotides
GFF2030 - hypothetical protein, at 270,041 to 270,661
GFF2030
GFF2031 - Ribosomal RNA small subunit methyltransferase J, at 270,754 to 271,536
GFF2031
GFF2032 - hypothetical protein, at 271,635 to 272,288
GFF2032
GFF2033 - Multidrug resistance protein MdtA, at 272,383 to 273,483
GFF2033
Position (kb) 271
272
273 Strain fitness (log2 ratio) -1
0
1 at 270.985 kb on + strand, within GFF2031 at 270.986 kb on - strand, within GFF2031 at 271.193 kb on + strand, within GFF2031 at 271.194 kb on - strand, within GFF2031 at 271.194 kb on - strand, within GFF2031 at 271.194 kb on - strand, within GFF2031 at 271.282 kb on + strand, within GFF2031 at 271.282 kb on + strand, within GFF2031 at 271.283 kb on - strand, within GFF2031 at 271.283 kb on - strand, within GFF2031 at 271.502 kb on - strand at 271.502 kb on - strand at 271.510 kb on + strand at 271.510 kb on + strand at 271.535 kb on - strand at 271.632 kb on + strand at 271.632 kb on + strand at 271.633 kb on - strand at 271.633 kb on - strand at 271.636 kb on + strand at 271.636 kb on + strand at 271.636 kb on + strand at 271.637 kb on - strand at 271.637 kb on - strand at 271.637 kb on - strand at 271.637 kb on - strand at 271.637 kb on - strand at 271.663 kb on + strand at 271.663 kb on + strand at 271.664 kb on - strand at 271.664 kb on - strand at 271.673 kb on + strand at 271.673 kb on + strand at 271.674 kb on - strand at 271.741 kb on + strand, within GFF2032 at 271.742 kb on - strand, within GFF2032 at 271.954 kb on - strand, within GFF2032 at 272.007 kb on + strand, within GFF2032 at 272.007 kb on + strand, within GFF2032 at 272.007 kb on + strand, within GFF2032 at 272.008 kb on - strand, within GFF2032 at 272.008 kb on - strand, within GFF2032 at 272.122 kb on + strand, within GFF2032 at 272.123 kb on - strand, within GFF2032 at 272.182 kb on + strand, within GFF2032 at 272.300 kb on - strand at 272.322 kb on + strand at 272.322 kb on + strand at 272.322 kb on + strand at 272.325 kb on + strand at 272.325 kb on + strand at 272.325 kb on + strand at 272.328 kb on + strand at 272.346 kb on - strand at 272.346 kb on - strand at 272.349 kb on + strand at 272.350 kb on - strand at 272.492 kb on + strand at 272.551 kb on + strand, within GFF2033 at 272.748 kb on + strand, within GFF2033 at 272.749 kb on - strand, within GFF2033 at 272.749 kb on - strand, within GFF2033 at 272.807 kb on + strand, within GFF2033 at 272.807 kb on + strand, within GFF2033 at 272.808 kb on - strand, within GFF2033 at 272.878 kb on + strand, within GFF2033 at 273.277 kb on + strand, within GFF2033 at 273.277 kb on + strand, within GFF2033 at 273.277 kb on + strand, within GFF2033
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 270,985 + GFF2031 0.30 -1.4 270,986 - GFF2031 0.30 -0.4 271,193 + GFF2031 0.56 +0.3 271,194 - GFF2031 0.56 +0.3 271,194 - GFF2031 0.56 -1.0 271,194 - GFF2031 0.56 +0.3 271,282 + GFF2031 0.67 -0.1 271,282 + GFF2031 0.67 -1.5 271,283 - GFF2031 0.68 +0.6 271,283 - GFF2031 0.68 +1.3 271,502 - +0.6 271,502 - +1.3 271,510 + -0.3 271,510 + +0.0 271,535 - -0.2 271,632 + -0.0 271,632 + +0.1 271,633 - +0.0 271,633 - -1.0 271,636 + +0.1 271,636 + -0.3 271,636 + +0.2 271,637 - +0.6 271,637 - -0.2 271,637 - +0.5 271,637 - -0.0 271,637 - -0.7 271,663 + -0.2 271,663 + -0.8 271,664 - +0.7 271,664 - -0.3 271,673 + -0.6 271,673 + +0.5 271,674 - +0.9 271,741 + GFF2032 0.16 +0.3 271,742 - GFF2032 0.16 -0.4 271,954 - GFF2032 0.49 -0.8 272,007 + GFF2032 0.57 +1.0 272,007 + GFF2032 0.57 +0.1 272,007 + GFF2032 0.57 +0.5 272,008 - GFF2032 0.57 +0.8 272,008 - GFF2032 0.57 +0.8 272,122 + GFF2032 0.74 -1.2 272,123 - GFF2032 0.75 -0.3 272,182 + GFF2032 0.84 -0.3 272,300 - -0.3 272,322 + +0.1 272,322 + +0.2 272,322 + -0.9 272,325 + +0.6 272,325 + +1.0 272,325 + -0.0 272,328 + +0.7 272,346 - -0.2 272,346 - +0.6 272,349 + -0.2 272,350 - -0.9 272,492 + -0.3 272,551 + GFF2033 0.15 +0.8 272,748 + GFF2033 0.33 +1.2 272,749 - GFF2033 0.33 -0.6 272,749 - GFF2033 0.33 -0.5 272,807 + GFF2033 0.39 -0.2 272,807 + GFF2033 0.39 -1.2 272,808 - GFF2033 0.39 -0.8 272,878 + GFF2033 0.45 +0.1 273,277 + GFF2033 0.81 +0.4 273,277 + GFF2033 0.81 +0.8 273,277 + GFF2033 0.81 -0.5
Or see this region's nucleotide sequence