Strain Fitness in Escherichia fergusonii Becca around EFB2_04450

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,665,198	-		EFB2_04449	0.60	+0.6
4,665,209	+		EFB2_04449	0.61	-0.5
4,665,282	+		EFB2_04449	0.66	+2.2
4,665,304	+		EFB2_04449	0.67	-0.2
4,665,305	-		EFB2_04449	0.67	+1.8
4,665,308	+		EFB2_04449	0.68	-0.6
4,665,324	+		EFB2_04449	0.69	+0.2
4,665,354	-		EFB2_04449	0.71	+1.9
4,665,459	-		EFB2_04449	0.77	-0.3
4,665,459	-		EFB2_04449	0.77	-2.2
4,665,479	+		EFB2_04449	0.79	+0.5
4,665,480	-		EFB2_04449	0.79	-1.5
4,665,480	-		EFB2_04449	0.79	-0.8
4,665,492	+		EFB2_04449	0.79	-1.9
4,665,522	+		EFB2_04449	0.81	-2.9
4,665,524	+		EFB2_04449	0.82	+0.4
4,665,524	+		EFB2_04449	0.82	+0.4
4,665,527	-		EFB2_04449	0.82	+0.6
4,665,592	-		EFB2_04449	0.86	+1.4
4,665,626	-		EFB2_04449	0.88	-0.8
4,665,685	+				-0.3
4,665,686	-				-0.1
4,665,704	+				-0.1
4,665,744	+				+1.3
4,665,744	+				+1.2
4,665,745	-				-1.5
4,665,746	+				+1.0
4,665,746	+				-1.8
4,665,747	-				+0.7
4,665,766	+				+1.4
4,665,766	+				-0.2
4,665,766	+				+2.2
4,665,766	+				-0.2
4,665,767	-				-2.0
4,665,767	-				+0.2
4,665,778	+				-0.2
4,665,806	-				-0.3
4,665,809	+				-0.4
4,665,877	+				+1.3
4,665,878	-				-0.2
4,665,878	-				+0.3
4,666,045	+				+2.2
4,666,054	+				-0.2
4,666,086	-				-0.2
4,666,118	+				-1.6
4,666,118	+				-0.3
4,666,122	+				-1.6
4,666,123	-				-0.1
4,666,124	+				+0.1
4,666,124	+				+0.4
4,666,124	+				-1.3
4,666,124	+				+0.6
4,666,124	+				+1.2
4,666,124	+				-0.4
4,666,125	-				+1.5
4,666,125	-				-0.2
4,666,125	-				-2.7
4,666,125	-				+0.4
4,666,125	-				-2.5
4,666,229	+				-0.7
4,666,229	+				-0.8
4,666,229	+				+1.6
4,666,230	-				+0.8
4,666,230	-				-1.4
4,666,230	-				-0.3
4,666,230	-				+0.8
4,666,255	+				-0.7
4,666,267	+				+1.9
4,666,268	-				+2.3
4,666,283	+				+0.3
4,666,289	+				+0.8
4,666,304	+				+0.5
4,666,313	+		EFB2_04450	0.10	-0.5
4,666,314	-		EFB2_04450	0.11	-2.7
4,666,335	+		EFB2_04450	0.12	+0.4
4,666,335	+		EFB2_04450	0.12	+0.4
4,666,336	-		EFB2_04450	0.12	+0.6
4,666,336	-		EFB2_04450	0.12	-1.5
4,666,339	+		EFB2_04450	0.12	-2.4
4,666,339	+		EFB2_04450	0.12	-2.0
4,666,339	+		EFB2_04450	0.12	-0.9
4,666,339	+		EFB2_04450	0.12	-1.0
4,666,339	+		EFB2_04450	0.12	-2.4
4,666,339	+		EFB2_04450	0.12	+0.4
4,666,339	+		EFB2_04450	0.12	+0.9
4,666,339	+		EFB2_04450	0.12	-0.2
4,666,339	+		EFB2_04450	0.12	+0.1
4,666,339	+		EFB2_04450	0.12	+0.2
4,666,339	+		EFB2_04450	0.12	-0.8
4,666,339	+		EFB2_04450	0.12	-0.6
4,666,339	+		EFB2_04450	0.12	-0.5
4,666,339	+		EFB2_04450	0.12	+0.2
4,666,340	-		EFB2_04450	0.13	+0.0
4,666,340	-		EFB2_04450	0.13	-2.3
4,666,340	-		EFB2_04450	0.13	-2.0
4,666,340	-		EFB2_04450	0.13	+0.4
4,666,340	-		EFB2_04450	0.13	+0.3
4,666,340	-		EFB2_04450	0.13	-3.5
4,666,340	-		EFB2_04450	0.13	+0.3
4,666,340	-		EFB2_04450	0.13	-1.6
4,666,340	-		EFB2_04450	0.13	+0.3
4,666,340	-		EFB2_04450	0.13	+0.1
4,666,340	-		EFB2_04450	0.13	-2.0
4,666,340	-		EFB2_04450	0.13	-1.6
4,666,340	-		EFB2_04450	0.13	+2.7
4,666,340	-		EFB2_04450	0.13	-1.0
4,666,340	-		EFB2_04450	0.13	-0.1
4,666,340	-		EFB2_04450	0.13	-2.5
4,666,342	-		EFB2_04450	0.13	+0.2
4,666,437	+		EFB2_04450	0.20	-0.4
4,666,440	+		EFB2_04450	0.20	-2.4
4,666,441	-		EFB2_04450	0.20	+0.7
4,666,441	-		EFB2_04450	0.20	+0.0
4,666,441	-		EFB2_04450	0.20	-0.4
4,666,441	-		EFB2_04450	0.20	+0.7
4,666,449	-		EFB2_04450	0.21	-0.2
4,666,460	+		EFB2_04450	0.21	-2.2
4,666,476	-		EFB2_04450	0.23	-0.1
4,666,476	-		EFB2_04450	0.23	+1.0
4,666,476	-		EFB2_04450	0.23	+0.7
4,666,476	-		EFB2_04450	0.23	+1.2
4,666,486	+		EFB2_04450	0.23	-0.4
4,666,486	+		EFB2_04450	0.23	+0.3
4,666,486	+		EFB2_04450	0.23	+2.6
4,666,487	-		EFB2_04450	0.24	-1.2
4,666,487	-		EFB2_04450	0.24	+1.4
4,666,491	+		EFB2_04450	0.24	+2.4
4,666,491	+		EFB2_04450	0.24	-2.1
4,666,492	-		EFB2_04450	0.24	-1.0
4,666,492	-		EFB2_04450	0.24	+1.7
4,666,492	-		EFB2_04450	0.24	+1.1
4,666,516	+		EFB2_04450	0.26	+0.7
4,666,516	+		EFB2_04450	0.26	+0.2
4,666,517	-		EFB2_04450	0.26	+0.4
4,666,517	-		EFB2_04450	0.26	-0.5
4,666,517	-		EFB2_04450	0.26	-0.2
4,666,547	+		EFB2_04450	0.28	-2.7
4,666,547	+		EFB2_04450	0.28	-0.7
4,666,547	+		EFB2_04450	0.28	-2.6
4,666,548	-		EFB2_04450	0.28	+2.3
4,666,548	-		EFB2_04450	0.28	+0.8
4,666,548	-		EFB2_04450	0.28	-0.4
4,666,564	+		EFB2_04450	0.29	+1.4
4,666,565	-		EFB2_04450	0.29	+0.0
4,666,568	+		EFB2_04450	0.30	+0.9
4,666,568	+		EFB2_04450	0.30	+1.8
4,666,569	-		EFB2_04450	0.30	+0.7
4,666,569	-		EFB2_04450	0.30	+1.4
4,666,569	-		EFB2_04450	0.30	-0.6
4,666,580	+		EFB2_04450	0.30	+0.4
4,666,580	+		EFB2_04450	0.30	+0.5
4,666,580	+		EFB2_04450	0.30	-2.3
4,666,581	-		EFB2_04450	0.31	-2.3
4,666,581	-		EFB2_04450	0.31	-0.7
4,666,592	+		EFB2_04450	0.31	+1.4
4,666,600	+		EFB2_04450	0.32	+0.7
4,666,637	+		EFB2_04450	0.35	+1.0
4,666,637	+		EFB2_04450	0.35	+0.2
4,666,637	+		EFB2_04450	0.35	-0.2
4,666,637	+		EFB2_04450	0.35	+0.0
4,666,637	+		EFB2_04450	0.35	-0.9
4,666,637	+		EFB2_04450	0.35	-0.2
4,666,637	+		EFB2_04450	0.35	+1.9
4,666,638	-		EFB2_04450	0.35	+0.7
4,666,658	+		EFB2_04450	0.36	+0.3
4,666,658	+		EFB2_04450	0.36	+1.3
4,666,658	+		EFB2_04450	0.36	-2.5
4,666,658	+		EFB2_04450	0.36	+0.0
4,666,659	-		EFB2_04450	0.36	-0.2
4,666,659	-		EFB2_04450	0.36	+1.0
4,666,659	-		EFB2_04450	0.36	+0.9
4,666,659	-		EFB2_04450	0.36	-0.1
4,666,659	-		EFB2_04450	0.36	-3.1
4,666,659	-		EFB2_04450	0.36	-0.0
4,666,692	+		EFB2_04450	0.39	-0.1
4,666,692	+		EFB2_04450	0.39	+0.3
4,666,692	+		EFB2_04450	0.39	-2.2
4,666,692	+		EFB2_04450	0.39	-0.5
4,666,692	+		EFB2_04450	0.39	+1.1
4,666,692	+		EFB2_04450	0.39	-2.7
4,666,692	+		EFB2_04450	0.39	-2.7
4,666,692	+		EFB2_04450	0.39	+0.8
4,666,692	+		EFB2_04450	0.39	-1.5
4,666,692	+		EFB2_04450	0.39	-0.9
4,666,693	-		EFB2_04450	0.39	+1.5
4,666,693	-		EFB2_04450	0.39	-0.2
4,666,693	-		EFB2_04450	0.39	-1.1
4,666,693	-		EFB2_04450	0.39	+1.0
4,666,693	-		EFB2_04450	0.39	-2.6
4,666,693	-		EFB2_04450	0.39	-0.3
4,666,693	-		EFB2_04450	0.39	-1.4
4,666,693	-		EFB2_04450	0.39	-0.8
4,666,693	-		EFB2_04450	0.39	-0.9
4,666,693	-		EFB2_04450	0.39	+2.6
4,666,693	-		EFB2_04450	0.39	+1.7
4,666,700	+		EFB2_04450	0.39	-3.6
4,666,700	+		EFB2_04450	0.39	-0.2
4,666,700	+		EFB2_04450	0.39	+0.9
4,666,700	+		EFB2_04450	0.39	+0.1
4,666,701	-		EFB2_04450	0.40	+0.1
4,666,701	-		EFB2_04450	0.40	-3.1
4,666,701	-		EFB2_04450	0.40	+0.4
4,666,701	-		EFB2_04450	0.40	-2.4
4,666,709	+		EFB2_04450	0.40	-0.3
4,666,719	-		EFB2_04450	0.41	+0.2
4,666,742	+		EFB2_04450	0.43	+0.7
4,666,742	+		EFB2_04450	0.43	+0.2
4,666,742	+		EFB2_04450	0.43	+0.2
4,666,742	+		EFB2_04450	0.43	+0.2
4,666,742	+		EFB2_04450	0.43	-0.6
4,666,743	-		EFB2_04450	0.43	+0.0
4,666,743	-		EFB2_04450	0.43	-1.3
4,666,748	+		EFB2_04450	0.43	-0.1
4,666,748	+		EFB2_04450	0.43	+0.4
4,666,748	+		EFB2_04450	0.43	+1.8
4,666,749	-		EFB2_04450	0.43	-3.2
4,666,749	-		EFB2_04450	0.43	-0.2
4,666,749	-		EFB2_04450	0.43	+0.9
4,666,749	-		EFB2_04450	0.43	+0.7
4,666,795	+		EFB2_04450	0.47	-1.4
4,666,795	+		EFB2_04450	0.47	-2.2
4,666,795	+		EFB2_04450	0.47	+0.7
4,666,795	+		EFB2_04450	0.47	-2.3
4,666,795	+		EFB2_04450	0.47	+1.0
4,666,795	+		EFB2_04450	0.47	+0.7
4,666,795	+		EFB2_04450	0.47	-2.7
4,666,795	+		EFB2_04450	0.47	+1.3
4,666,795	+		EFB2_04450	0.47	-3.0
4,666,795	+		EFB2_04450	0.47	+1.5
4,666,795	+		EFB2_04450	0.47	+1.1
4,666,795	+		EFB2_04450	0.47	+0.2
4,666,795	+		EFB2_04450	0.47	+1.4
4,666,795	+		EFB2_04450	0.47	+0.9
4,666,796	-		EFB2_04450	0.47	+1.0
4,666,796	-		EFB2_04450	0.47	-0.6
4,666,796	-		EFB2_04450	0.47	+0.1
4,666,796	-		EFB2_04450	0.47	-0.9
4,666,796	-		EFB2_04450	0.47	-1.4
4,666,796	-		EFB2_04450	0.47	-0.7
4,666,799	+		EFB2_04450	0.47	+0.1
4,666,799	+		EFB2_04450	0.47	-0.1
4,666,799	+		EFB2_04450	0.47	-1.2
4,666,799	+		EFB2_04450	0.47	-3.0
4,666,799	+		EFB2_04450	0.47	+1.5
4,666,799	+		EFB2_04450	0.47	+0.5
4,666,799	+		EFB2_04450	0.47	+0.3
4,666,800	-		EFB2_04450	0.47	+0.2
4,666,800	-		EFB2_04450	0.47	+1.1
4,666,800	-		EFB2_04450	0.47	-0.7
4,666,800	-		EFB2_04450	0.47	-2.1
4,666,800	-		EFB2_04450	0.47	+0.5
4,666,805	+		EFB2_04450	0.47	-0.3
4,666,805	+		EFB2_04450	0.47	+0.6
4,666,805	+		EFB2_04450	0.47	+0.0
4,666,805	+		EFB2_04450	0.47	-2.4
4,666,805	+		EFB2_04450	0.47	+0.4
4,666,806	-		EFB2_04450	0.47	-0.6
4,666,806	-		EFB2_04450	0.47	+0.6
4,666,806	-		EFB2_04450	0.47	-1.6
4,666,806	-		EFB2_04450	0.47	-0.7
4,666,806	-		EFB2_04450	0.47	+1.1
4,666,811	+		EFB2_04450	0.48	-0.0
4,666,826	+		EFB2_04450	0.49	+0.3
4,666,826	+		EFB2_04450	0.49	+0.1
4,666,853	+		EFB2_04450	0.51	-0.0
4,666,868	+		EFB2_04450	0.52	-1.2
4,666,868	+		EFB2_04450	0.52	+0.3
4,666,868	+		EFB2_04450	0.52	-0.8
4,666,868	+		EFB2_04450	0.52	+2.2
4,666,868	+		EFB2_04450	0.52	-0.4
4,666,868	+		EFB2_04450	0.52	-0.2
4,666,868	+		EFB2_04450	0.52	+1.7
4,666,868	+		EFB2_04450	0.52	-0.9
4,666,869	-		EFB2_04450	0.52	+1.1
4,666,869	-		EFB2_04450	0.52	+0.7
4,666,869	-		EFB2_04450	0.52	-0.9
4,666,869	-		EFB2_04450	0.52	-0.3
4,666,869	-		EFB2_04450	0.52	-0.3
4,666,869	-		EFB2_04450	0.52	-1.4
4,666,869	-		EFB2_04450	0.52	+1.4
4,666,869	-		EFB2_04450	0.52	-1.9
4,666,869	-		EFB2_04450	0.52	-1.4
4,666,869	-		EFB2_04450	0.52	-0.7
4,666,875	+		EFB2_04450	0.53	-0.7
4,666,875	+		EFB2_04450	0.53	-0.3
4,666,875	+		EFB2_04450	0.53	+1.7
4,666,875	+		EFB2_04450	0.53	-2.1
4,666,875	+		EFB2_04450	0.53	-1.6
4,666,875	+		EFB2_04450	0.53	+0.9
4,666,875	+		EFB2_04450	0.53	-3.4
4,666,876	-		EFB2_04450	0.53	+0.0
4,666,876	-		EFB2_04450	0.53	-1.3
4,666,876	-		EFB2_04450	0.53	+1.2
4,666,876	-		EFB2_04450	0.53	+0.4
4,666,876	-		EFB2_04450	0.53	+1.0
4,666,876	-		EFB2_04450	0.53	+0.5
4,666,876	-		EFB2_04450	0.53	-0.6
4,666,876	-		EFB2_04450	0.53	+0.5
4,666,876	-		EFB2_04450	0.53	-1.0
4,666,876	-		EFB2_04450	0.53	-2.8
4,666,876	-		EFB2_04450	0.53	+1.3
4,666,876	-		EFB2_04450	0.53	-2.4
4,666,904	+		EFB2_04450	0.55	-0.8
4,666,904	+		EFB2_04450	0.55	-1.4
4,666,904	+		EFB2_04450	0.55	-1.4
4,666,905	-		EFB2_04450	0.55	-1.6
4,666,905	-		EFB2_04450	0.55	+0.3
4,666,908	+		EFB2_04450	0.55	+0.5
4,666,908	+		EFB2_04450	0.55	+1.3
4,666,908	+		EFB2_04450	0.55	+0.1
4,666,908	+		EFB2_04450	0.55	-0.1
4,666,908	+		EFB2_04450	0.55	-1.2
4,666,908	+		EFB2_04450	0.55	-0.2
4,666,908	+		EFB2_04450	0.55	-0.2
4,666,908	+		EFB2_04450	0.55	-1.6
4,666,908	+		EFB2_04450	0.55	+0.9
4,666,908	+		EFB2_04450	0.55	-1.9
4,666,908	+		EFB2_04450	0.55	-0.4
4,666,908	+		EFB2_04450	0.55	+0.2
4,666,908	+		EFB2_04450	0.55	-2.9
4,666,908	+		EFB2_04450	0.55	-0.9
4,666,908	+		EFB2_04450	0.55	+1.3
4,666,908	+		EFB2_04450	0.55	+0.4
4,666,908	+		EFB2_04450	0.55	+0.2
4,666,909	-		EFB2_04450	0.55	+0.7
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