Strain Fitness in Escherichia fergusonii Becca around EFB2_04241

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_04240 and EFB2_04241 are separated by 233 nucleotidesEFB2_04241 and EFB2_04242 are separated by 451 nucleotidesEFB2_04242 and EFB2_04243 are separated by 62 nucleotides EFB2_04240: EFB2_04240 - hypothetical protein, at 4,455,418 to 4,456,497 _04240 EFB2_04241: EFB2_04241 - hypothetical protein, at 4,456,731 to 4,457,141 _04241 EFB2_04242: EFB2_04242 - hypothetical protein, at 4,457,593 to 4,457,799 _04242 EFB2_04243: EFB2_04243 - hypothetical protein, at 4,457,862 to 4,458,338 _04243 Position (kb) 4456 4457 4458Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4457.957 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.997 kb on + strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4457.998 kb on - strand, within EFB2_04243at 4458.017 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.032 kb on + strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.033 kb on - strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.036 kb on + strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.037 kb on - strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.041 kb on + strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.042 kb on - strand, within EFB2_04243at 4458.101 kb on + strand, within EFB2_04243at 4458.101 kb on + strand, within EFB2_04243at 4458.102 kb on - strand, within EFB2_04243

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Per-strain Table

Position Strand Gene LocusTag Fraction phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
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4,457,957 + EFB2_04243 0.20 +1.2
4,457,997 + EFB2_04243 0.28 -0.9
4,457,997 + EFB2_04243 0.28 +0.8
4,457,997 + EFB2_04243 0.28 -0.4
4,457,997 + EFB2_04243 0.28 +0.7
4,457,997 + EFB2_04243 0.28 +1.7
4,457,997 + EFB2_04243 0.28 +0.4
4,457,997 + EFB2_04243 0.28 -0.9
4,457,997 + EFB2_04243 0.28 -0.3
4,457,997 + EFB2_04243 0.28 -0.7
4,457,997 + EFB2_04243 0.28 +2.2
4,457,997 + EFB2_04243 0.28 +1.3
4,457,997 + EFB2_04243 0.28 -0.7
4,457,998 - EFB2_04243 0.29 -0.0
4,457,998 - EFB2_04243 0.29 +0.7
4,457,998 - EFB2_04243 0.29 -0.7
4,457,998 - EFB2_04243 0.29 +0.6
4,457,998 - EFB2_04243 0.29 +0.6
4,457,998 - EFB2_04243 0.29 -2.7
4,457,998 - EFB2_04243 0.29 +1.2
4,457,998 - EFB2_04243 0.29 -2.2
4,457,998 - EFB2_04243 0.29 +0.0
4,457,998 - EFB2_04243 0.29 -2.7
4,457,998 - EFB2_04243 0.29 +0.3
4,457,998 - EFB2_04243 0.29 -0.9
4,457,998 - EFB2_04243 0.29 -0.7
4,457,998 - EFB2_04243 0.29 +0.7
4,457,998 - EFB2_04243 0.29 +0.1
4,458,017 + EFB2_04243 0.32 +0.2
4,458,032 + EFB2_04243 0.36 -0.8
4,458,032 + EFB2_04243 0.36 +0.6
4,458,032 + EFB2_04243 0.36 +1.6
4,458,032 + EFB2_04243 0.36 +0.1
4,458,032 + EFB2_04243 0.36 -0.4
4,458,032 + EFB2_04243 0.36 -0.8
4,458,032 + EFB2_04243 0.36 -2.9
4,458,032 + EFB2_04243 0.36 +0.0
4,458,032 + EFB2_04243 0.36 -0.9
4,458,032 + EFB2_04243 0.36 +0.9
4,458,032 + EFB2_04243 0.36 -1.4
4,458,032 + EFB2_04243 0.36 +0.4
4,458,032 + EFB2_04243 0.36 +0.6
4,458,032 + EFB2_04243 0.36 +0.1
4,458,032 + EFB2_04243 0.36 -0.6
4,458,032 + EFB2_04243 0.36 +0.4
4,458,032 + EFB2_04243 0.36 -0.1
4,458,032 + EFB2_04243 0.36 -2.4
4,458,032 + EFB2_04243 0.36 -1.9
4,458,033 - EFB2_04243 0.36 +0.1
4,458,033 - EFB2_04243 0.36 +1.2
4,458,033 - EFB2_04243 0.36 +0.4
4,458,033 - EFB2_04243 0.36 +0.3
4,458,033 - EFB2_04243 0.36 +1.6
4,458,033 - EFB2_04243 0.36 +0.5
4,458,033 - EFB2_04243 0.36 +0.2
4,458,033 - EFB2_04243 0.36 -2.3
4,458,033 - EFB2_04243 0.36 -0.2
4,458,033 - EFB2_04243 0.36 +0.5
4,458,033 - EFB2_04243 0.36 +0.1
4,458,033 - EFB2_04243 0.36 -2.2
4,458,033 - EFB2_04243 0.36 +0.4
4,458,033 - EFB2_04243 0.36 -0.4
4,458,033 - EFB2_04243 0.36 -1.9
4,458,033 - EFB2_04243 0.36 -2.1
4,458,033 - EFB2_04243 0.36 -1.3
4,458,033 - EFB2_04243 0.36 -0.4
4,458,033 - EFB2_04243 0.36 -2.5
4,458,033 - EFB2_04243 0.36 +0.5
4,458,033 - EFB2_04243 0.36 -0.2
4,458,033 - EFB2_04243 0.36 -0.2
4,458,033 - EFB2_04243 0.36 +2.1
4,458,036 + EFB2_04243 0.36 -0.2
4,458,036 + EFB2_04243 0.36 +1.3
4,458,036 + EFB2_04243 0.36 +0.4
4,458,036 + EFB2_04243 0.36 +0.0
4,458,036 + EFB2_04243 0.36 +0.5
4,458,036 + EFB2_04243 0.36 +0.3
4,458,036 + EFB2_04243 0.36 +0.8
4,458,036 + EFB2_04243 0.36 -0.1
4,458,036 + EFB2_04243 0.36 +0.3
4,458,036 + EFB2_04243 0.36 +0.7
4,458,036 + EFB2_04243 0.36 -0.3
4,458,036 + EFB2_04243 0.36 -1.6
4,458,036 + EFB2_04243 0.36 +0.2
4,458,036 + EFB2_04243 0.36 +1.0
4,458,036 + EFB2_04243 0.36 +1.0
4,458,036 + EFB2_04243 0.36 +1.7
4,458,036 + EFB2_04243 0.36 -1.9
4,458,036 + EFB2_04243 0.36 -0.7
4,458,036 + EFB2_04243 0.36 -0.2
4,458,036 + EFB2_04243 0.36 +0.6
4,458,036 + EFB2_04243 0.36 +0.1
4,458,036 + EFB2_04243 0.36 +0.9
4,458,036 + EFB2_04243 0.36 -0.3
4,458,036 + EFB2_04243 0.36 -0.0
4,458,036 + EFB2_04243 0.36 +0.7
4,458,036 + EFB2_04243 0.36 -0.9
4,458,036 + EFB2_04243 0.36 +1.0
4,458,036 + EFB2_04243 0.36 -0.3
4,458,036 + EFB2_04243 0.36 -0.8
4,458,036 + EFB2_04243 0.36 +1.6
4,458,036 + EFB2_04243 0.36 -3.2
4,458,036 + EFB2_04243 0.36 +0.2
4,458,036 + EFB2_04243 0.36 +0.3
4,458,036 + EFB2_04243 0.36 -1.1
4,458,036 + EFB2_04243 0.36 -0.5
4,458,036 + EFB2_04243 0.36 -0.8
4,458,036 + EFB2_04243 0.36 +0.9
4,458,036 + EFB2_04243 0.36 +0.9
4,458,036 + EFB2_04243 0.36 -2.4
4,458,036 + EFB2_04243 0.36 -0.2
4,458,037 - EFB2_04243 0.37 -1.9
4,458,037 - EFB2_04243 0.37 -0.7
4,458,037 - EFB2_04243 0.37 +0.3
4,458,037 - EFB2_04243 0.37 -1.3
4,458,037 - EFB2_04243 0.37 +0.3
4,458,037 - EFB2_04243 0.37 -1.8
4,458,037 - EFB2_04243 0.37 -2.0
4,458,037 - EFB2_04243 0.37 -0.2
4,458,037 - EFB2_04243 0.37 -0.5
4,458,037 - EFB2_04243 0.37 -0.2
4,458,037 - EFB2_04243 0.37 +0.4
4,458,037 - EFB2_04243 0.37 +1.0
4,458,037 - EFB2_04243 0.37 -0.5
4,458,037 - EFB2_04243 0.37 -0.1
4,458,037 - EFB2_04243 0.37 +1.5
4,458,037 - EFB2_04243 0.37 -2.6
4,458,037 - EFB2_04243 0.37 -1.9
4,458,037 - EFB2_04243 0.37 +1.3
4,458,037 - EFB2_04243 0.37 +1.7
4,458,037 - EFB2_04243 0.37 +1.7
4,458,037 - EFB2_04243 0.37 -2.2
4,458,037 - EFB2_04243 0.37 +0.0
4,458,037 - EFB2_04243 0.37 +0.3
4,458,037 - EFB2_04243 0.37 -0.2
4,458,037 - EFB2_04243 0.37 +1.1
4,458,037 - EFB2_04243 0.37 -1.3
4,458,037 - EFB2_04243 0.37 +0.4
4,458,037 - EFB2_04243 0.37 -1.6
4,458,037 - EFB2_04243 0.37 -0.7
4,458,037 - EFB2_04243 0.37 -1.3
4,458,037 - EFB2_04243 0.37 -0.4
4,458,037 - EFB2_04243 0.37 -0.4
4,458,037 - EFB2_04243 0.37 +0.1
4,458,041 + EFB2_04243 0.38 -3.4
4,458,041 + EFB2_04243 0.38 -0.8
4,458,041 + EFB2_04243 0.38 -2.4
4,458,041 + EFB2_04243 0.38 -0.7
4,458,041 + EFB2_04243 0.38 -0.9
4,458,041 + EFB2_04243 0.38 +0.2
4,458,041 + EFB2_04243 0.38 -1.0
4,458,041 + EFB2_04243 0.38 +1.3
4,458,041 + EFB2_04243 0.38 +0.5
4,458,041 + EFB2_04243 0.38 +0.4
4,458,041 + EFB2_04243 0.38 -1.1
4,458,041 + EFB2_04243 0.38 -1.9
4,458,041 + EFB2_04243 0.38 -0.7
4,458,041 + EFB2_04243 0.38 -1.5
4,458,041 + EFB2_04243 0.38 +0.1
4,458,041 + EFB2_04243 0.38 +1.6
4,458,041 + EFB2_04243 0.38 +1.2
4,458,041 + EFB2_04243 0.38 -2.2
4,458,041 + EFB2_04243 0.38 +1.6
4,458,041 + EFB2_04243 0.38 +1.2
4,458,041 + EFB2_04243 0.38 -0.8
4,458,041 + EFB2_04243 0.38 -0.3
4,458,041 + EFB2_04243 0.38 -0.0
4,458,041 + EFB2_04243 0.38 -1.0
4,458,041 + EFB2_04243 0.38 +0.1
4,458,041 + EFB2_04243 0.38 -0.5
4,458,041 + EFB2_04243 0.38 +0.0
4,458,042 - EFB2_04243 0.38 +0.1
4,458,042 - EFB2_04243 0.38 +0.4
4,458,042 - EFB2_04243 0.38 +1.6
4,458,042 - EFB2_04243 0.38 -2.8
4,458,042 - EFB2_04243 0.38 +0.2
4,458,042 - EFB2_04243 0.38 +0.7
4,458,042 - EFB2_04243 0.38 -3.8
4,458,042 - EFB2_04243 0.38 -1.5
4,458,042 - EFB2_04243 0.38 -1.4
4,458,042 - EFB2_04243 0.38 +0.4
4,458,042 - EFB2_04243 0.38 +0.8
4,458,042 - EFB2_04243 0.38 +0.6
4,458,042 - EFB2_04243 0.38 -1.8
4,458,042 - EFB2_04243 0.38 -0.4
4,458,042 - EFB2_04243 0.38 -0.2
4,458,042 - EFB2_04243 0.38 +0.1
4,458,042 - EFB2_04243 0.38 +1.8
4,458,042 - EFB2_04243 0.38 +0.2
4,458,042 - EFB2_04243 0.38 -1.3
4,458,042 - EFB2_04243 0.38 +1.1
4,458,042 - EFB2_04243 0.38 -1.0
4,458,042 - EFB2_04243 0.38 +0.9
4,458,042 - EFB2_04243 0.38 -0.0
4,458,101 + EFB2_04243 0.50 -1.5
4,458,101 + EFB2_04243 0.50 +0.8
4,458,102 - EFB2_04243 0.50 +0.2

Or see this region's nucleotide sequence