Strain Fitness in Escherichia fergusonii Becca around EFB2_04068

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,278,076	+				-1.6
4,278,076	+				-0.6
4,278,077	-				+0.7
4,278,077	-				+0.7
4,278,077	-				+0.8
4,278,077	-				+1.9
4,278,077	-				-1.0
4,278,175	+		EFB2_04067	0.11	+1.5
4,278,175	+		EFB2_04067	0.11	-0.5
4,278,175	+		EFB2_04067	0.11	-0.2
4,278,176	-		EFB2_04067	0.11	-3.1
4,278,205	+		EFB2_04067	0.16	+0.4
4,278,205	+		EFB2_04067	0.16	+0.4
4,278,205	+		EFB2_04067	0.16	-2.2
4,278,206	-		EFB2_04067	0.16	-3.5
4,278,206	-		EFB2_04067	0.16	-0.4
4,278,206	-		EFB2_04067	0.16	-0.2
4,278,206	-		EFB2_04067	0.16	+0.5
4,278,206	-		EFB2_04067	0.16	+0.9
4,278,245	-		EFB2_04067	0.21	+0.2
4,278,289	-		EFB2_04067	0.28	-0.3
4,278,289	-		EFB2_04067	0.28	-0.4
4,278,337	+		EFB2_04067	0.34	+0.2
4,278,337	+		EFB2_04067	0.34	+0.8
4,278,337	+		EFB2_04067	0.34	+0.2
4,278,337	+		EFB2_04067	0.34	+0.2
4,278,337	+		EFB2_04067	0.34	+2.0
4,278,338	-		EFB2_04067	0.34	+0.2
4,278,338	-		EFB2_04067	0.34	+0.7
4,278,392	-		EFB2_04067	0.42	+2.2
4,278,492	+		EFB2_04067	0.56	-3.5
4,278,505	+		EFB2_04067	0.58	-3.1
4,278,550	+		EFB2_04067	0.65	-0.5
4,278,550	+		EFB2_04067	0.65	+0.4
4,278,551	-		EFB2_04067	0.65	+3.5
4,278,576	+		EFB2_04067	0.68	+0.6
4,278,577	-		EFB2_04067	0.68	+1.2
4,278,596	+		EFB2_04067	0.71	-1.5
4,278,596	+		EFB2_04067	0.71	-1.2
4,278,596	+		EFB2_04067	0.71	-1.8
4,278,596	+		EFB2_04067	0.71	-0.9
4,278,596	+		EFB2_04067	0.71	-1.7
4,278,596	+		EFB2_04067	0.71	-0.6
4,278,597	-		EFB2_04067	0.71	+0.6
4,278,597	-		EFB2_04067	0.71	-0.3
4,278,628	-		EFB2_04067	0.76	-1.7
4,278,686	+		EFB2_04067	0.84	-2.2
4,278,687	-		EFB2_04067	0.84	+0.1
4,278,777	+				-0.0
4,278,777	+				-0.4
4,278,778	-				+1.4
4,278,789	+				+0.5
4,278,789	+				-0.9
4,278,789	+				+1.7
4,278,789	+				-1.8
4,278,789	+				+1.3
4,278,790	-				-0.5
4,278,791	+				+0.5
4,278,791	+				+1.1
4,278,791	+				-1.5
4,278,791	+				-0.7
4,278,791	+				-1.6
4,278,791	+				+0.8
4,278,791	+				+0.7
4,278,791	+				-0.8
4,278,791	+				-0.0
4,278,791	+				+0.7
4,278,791	+				-2.0
4,278,792	-				-2.1
4,278,792	-				-1.6
4,278,792	-				-2.4
4,278,792	-				+0.8
4,278,792	-				+0.4
4,278,792	-				-2.0
4,278,792	-				-1.5
4,278,792	-				-3.6
4,278,816	+				+1.1
4,278,817	-				+0.2
4,278,836	+				-0.3
4,278,837	-				+0.9
4,278,837	-				-1.2
4,278,845	+				-0.8
4,278,845	+				-1.0
4,278,845	+				-1.7
4,278,845	+				+0.4
4,278,845	+				+0.2
4,278,845	+				+0.4
4,278,845	+				-1.6
4,278,845	+				+0.6
4,278,846	-				+1.7
4,278,846	-				+1.5
4,278,846	-				+0.6
4,278,846	-				+0.3
4,278,846	-				-0.9
4,278,846	-				+1.4
4,278,846	-				+0.7
4,278,846	-				+1.1
4,278,846	-				+0.1
4,278,938	-				-0.1
4,278,938	-				-0.2
4,278,938	-				-0.8
4,278,938	-				-1.3
4,278,938	-				-0.0
4,278,938	-				-1.0
4,278,938	-				+0.2
4,278,946	+				+0.6
4,278,946	+				-0.4
4,278,946	+				+0.4
4,278,946	+				+0.4
4,278,946	+				+2.0
4,278,946	+				+1.3
4,278,946	+				+0.9
4,278,947	-				+0.5
4,278,947	-				-0.1
4,278,947	-				-1.2
4,278,947	-				-0.5
4,278,947	-				+1.4
4,278,947	-				+0.4
4,278,947	-				-0.4
4,278,947	-				-0.9
4,278,947	-				-0.1
4,278,947	-				-0.9
4,278,947	-				-4.0
4,278,999	+				+1.2
4,278,999	+				-0.4
4,279,027	+				-0.1
4,279,036	+				+0.6
4,279,036	+				+0.0
4,279,036	+				+1.2
4,279,036	+				+0.3
4,279,036	+				+1.6
4,279,036	+				+0.7
4,279,036	+				+0.7
4,279,036	+				+0.7
4,279,036	+				+3.5
4,279,036	+				+0.6
4,279,036	+				-2.1
4,279,036	+				+1.2
4,279,036	+				-1.2
4,279,036	+				-2.0
4,279,036	+				-1.4
4,279,036	+				+0.3
4,279,036	+				-0.4
4,279,036	+				-1.9
4,279,036	+				+2.1
4,279,036	+				-2.8
4,279,036	+				-1.1
4,279,036	+				+2.0
4,279,036	+				+0.0
4,279,037	-				+0.2
4,279,037	-				-0.8
4,279,037	-				-0.8
4,279,037	-				-0.4
4,279,037	-				-1.9
4,279,037	-				+1.5
4,279,037	-				-0.5
4,279,037	-				-0.9
4,279,037	-				-3.1
4,279,037	-				-2.4
4,279,037	-				-1.9
4,279,037	-				+0.0
4,279,037	-				-0.5
4,279,037	-				-2.4
4,279,037	-				+1.3
4,279,037	-				-1.5
4,279,037	-				+1.0
4,279,037	-				+1.6
4,279,037	-				-1.3
4,279,037	-				-0.9
4,279,037	-				+1.6
4,279,037	-				+1.1
4,279,037	-				-1.4
4,279,037	-				-0.4
4,279,037	-				+0.6
4,279,037	-				-0.5
4,279,037	-				+2.3
4,279,037	-				+0.4
4,279,037	-				-1.0
4,279,037	-				-0.8
4,279,037	-				+0.3
4,279,037	-				+1.1
4,279,037	-				+1.2
4,279,038	+				-0.2
4,279,038	+				-1.8
4,279,038	+				+0.5
4,279,038	+				-3.1
4,279,038	+				-0.7
4,279,038	+				+0.6
4,279,038	+				-0.1
4,279,038	+				+0.4
4,279,038	+				+0.4
4,279,038	+				-1.7
4,279,038	+				+0.3
4,279,038	+				+1.1
4,279,038	+				-2.2
4,279,038	+				+1.2
4,279,038	+				+0.0
4,279,038	+				+2.1
4,279,038	+				-1.8
4,279,038	+				+1.0
4,279,038	+				-0.6
4,279,038	+				+1.2
4,279,038	+				+1.8
4,279,039	-				-0.1
4,279,039	-				-2.4
4,279,039	-				+0.2
4,279,039	-				-0.7
4,279,039	-				+1.1
4,279,039	-				+1.3
4,279,039	-				-1.8
4,279,039	-				+0.3
4,279,039	-				-1.0
4,279,039	-				-0.3
4,279,039	-				-0.4
4,279,039	-				-0.3
4,279,039	-				-2.7
4,279,039	-				+0.3
4,279,039	-				+0.6
4,279,039	-				-1.3
4,279,039	-				-0.9
4,279,039	-				-0.4
4,279,039	-				+0.6
4,279,039	-				+0.3
4,279,039	-				-1.8
4,279,039	-				-0.2
4,279,039	-				+1.2
4,279,045	+				+1.1
4,279,045	+				-0.3
4,279,045	+				-0.5
4,279,045	+				-0.3
4,279,045	+				+1.0
4,279,046	-				-3.2
4,279,046	-				+0.0
4,279,046	-				-2.2
4,279,048	+				+0.1
4,279,048	+				+0.7
4,279,048	+				+0.5
4,279,048	+				+1.7
4,279,048	+				-2.6
4,279,048	+				+1.4
4,279,048	+				+0.3
4,279,049	-				+0.2
4,279,049	-				-0.3
4,279,049	-				+0.6
4,279,049	-				-0.9
4,279,049	-				-0.8
4,279,049	-				-0.0
4,279,049	-				-0.6
4,279,088	+				-1.3
4,279,088	+				+0.3
4,279,088	+				-0.5
4,279,089	-				+1.0
4,279,089	-				-0.7
4,279,089	-				-0.1
4,279,136	-		EFB2_04068	0.15	-0.8
4,279,136	-		EFB2_04068	0.15	-2.4
4,279,165	+		EFB2_04068	0.19	+2.0
4,279,165	+		EFB2_04068	0.19	+1.1
4,279,165	+		EFB2_04068	0.19	-0.3
4,279,165	+		EFB2_04068	0.19	+0.9
4,279,165	+		EFB2_04068	0.19	-1.1
4,279,166	-		EFB2_04068	0.19	-3.4
4,279,166	-		EFB2_04068	0.19	-1.4
4,279,166	-		EFB2_04068	0.19	-0.5
4,279,166	-		EFB2_04068	0.19	-0.2
4,279,232	-		EFB2_04068	0.28	+1.0
4,279,246	-		EFB2_04068	0.29	-0.2
4,279,246	-		EFB2_04068	0.29	-1.9
4,279,246	-		EFB2_04068	0.29	+0.0
4,279,252	+		EFB2_04068	0.30	-0.1
4,279,252	+		EFB2_04068	0.30	+0.8
4,279,252	+		EFB2_04068	0.30	-2.0
4,279,252	+		EFB2_04068	0.30	+0.7
4,279,252	+		EFB2_04068	0.30	+2.3
4,279,252	+		EFB2_04068	0.30	-0.1
4,279,252	+		EFB2_04068	0.30	-1.7
4,279,252	+		EFB2_04068	0.30	+2.3
4,279,252	+		EFB2_04068	0.30	-2.3
4,279,253	-		EFB2_04068	0.30	-1.5
4,279,263	-		EFB2_04068	0.32	-0.5
4,279,346	+		EFB2_04068	0.42	+0.8
4,279,347	-		EFB2_04068	0.42	+2.5
4,279,347	-		EFB2_04068	0.42	+1.1
4,279,360	+		EFB2_04068	0.44	+0.2
4,279,360	+		EFB2_04068	0.44	-0.1
4,279,360	+		EFB2_04068	0.44	+0.7
4,279,360	+		EFB2_04068	0.44	+0.4
4,279,361	-		EFB2_04068	0.44	-2.7
4,279,361	-		EFB2_04068	0.44	-1.8
4,279,361	-		EFB2_04068	0.44	+1.0
4,279,361	-		EFB2_04068	0.44	+0.9
4,279,553	+		EFB2_04068	0.69	-0.8
4,279,553	+		EFB2_04068	0.69	+2.1
4,279,553	+		EFB2_04068	0.69	-2.7
4,279,553	+		EFB2_04068	0.69	+0.0
4,279,554	-		EFB2_04068	0.69	-2.3
4,279,554	-		EFB2_04068	0.69	+0.6
4,279,554	-		EFB2_04068	0.69	-2.3
4,279,576	+		EFB2_04068	0.72	+1.3
4,279,576	+		EFB2_04068	0.72	-0.2
4,279,576	+		EFB2_04068	0.72	-0.9
4,279,577	-		EFB2_04068	0.72	-0.8
4,279,591	+		EFB2_04068	0.74	+1.2
4,279,591	+		EFB2_04068	0.74	-0.7
4,279,591	+		EFB2_04068	0.74	+1.5
4,279,591	+		EFB2_04068	0.74	+0.1
4,279,591	+		EFB2_04068	0.74	-2.6
4,279,591	+		EFB2_04068	0.74	+0.6
4,279,592	-		EFB2_04068	0.74	-1.6
4,279,592	-		EFB2_04068	0.74	-3.0
4,279,592	-		EFB2_04068	0.74	-0.2
4,279,617	+		EFB2_04068	0.77	+1.3
4,279,617	+		EFB2_04068	0.77	-1.7
4,279,618	-		EFB2_04068	0.77	+0.4
4,279,618	-		EFB2_04068	0.77	+0.4
4,279,618	-		EFB2_04068	0.77	-0.1
4,279,618	-		EFB2_04068	0.77	+0.8
4,279,630	-		EFB2_04068	0.79	+0.5
4,279,630	-		EFB2_04068	0.79	+0.4
4,279,697	+		EFB2_04068	0.87	+0.7
4,279,698	-		EFB2_04068	0.87	+1.1
4,279,812	+				-0.2
4,279,812	+				-0.0
4,279,812	+				+0.1
4,279,812	+				-1.9
4,279,812	+				-1.4
4,279,812	+				-0.6
4,279,812	+				+0.5
4,279,812	+				+0.7
4,279,812	+				-0.7
4,279,812	+				+0.3
4,279,813	-				+0.1
4,279,813	-				-1.8
4,279,813	-				+0.4
4,279,813	-				-0.9
4,279,813	-				+0.9
4,279,813	-				+0.3
4,279,813	-				+0.5
4,279,813	-				-0.1
4,279,813	-				-0.2
4,279,813	-				+0.4
4,279,813	-				-2.5
4,279,813	-				+0.4
4,279,813	-				+0.2
4,279,863	+				+0.1
4,279,890	+				+1.1
4,279,891	-				+0.2
4,279,891	-				+0.1
4,279,955	-		EFB2_04069	0.15	-0.4
4,279,959	+		EFB2_04069	0.16	-2.9
4,279,979	+		EFB2_04069	0.17	+0.6
4,279,990	+		EFB2_04069	0.18	+1.0
4,279,991	-		EFB2_04069	0.19	-2.7
4,280,004	+		EFB2_04069	0.20	+1.3
4,280,004	+		EFB2_04069	0.20	-1.0
4,280,004	+		EFB2_04069	0.20	-1.9
4,280,004	+		EFB2_04069	0.20	-1.7
4,280,004	+		EFB2_04069	0.20	-2.8
4,280,005	-		EFB2_04069	0.20	+0.7
4,280,005	-		EFB2_04069	0.20	+0.6
4,280,006	+		EFB2_04069	0.20	-0.4
4,280,006	+		EFB2_04069	0.20	+0.1
4,280,006	+		EFB2_04069	0.20	+0.1
4,280,006	+		EFB2_04069	0.20	-0.5
4,280,007	-		EFB2_04069	0.20	+0.8
4,280,007	-		EFB2_04069	0.20	-3.6
4,280,007	-		EFB2_04069	0.20	+0.2
4,280,007	-		EFB2_04069	0.20	+1.2
4,280,007	-		EFB2_04069	0.20	-2.0
4,280,007	-		EFB2_04069	0.20	+0.7
4,280,007	-		EFB2_04069	0.20	-0.3
4,280,007	-		EFB2_04069	0.20	-1.7
4,280,046	+		EFB2_04069	0.24	+0.8
4,280,046	+		EFB2_04069	0.24	-2.4
4,280,047	-		EFB2_04069	0.24	-1.6
4,280,047	-		EFB2_04069	0.24	-3.2
4,280,047	-		EFB2_04069	0.24	-0.3
4,280,049	+		EFB2_04069	0.24	+0.7
4,280,049	+		EFB2_04069	0.24	+1.4
4,280,049	+		EFB2_04069	0.24	-0.1
4,280,049	+		EFB2_04069	0.24	-2.9
4,280,049	+		EFB2_04069	0.24	+0.6
4,280,049	+		EFB2_04069	0.24	-0.7
4,280,049	+		EFB2_04069	0.24	+0.1
4,280,049	+		EFB2_04069	0.24	+0.8
4,280,049	+		EFB2_04069	0.24	+2.8
4,280,049	+		EFB2_04069	0.24	-1.8
4,280,049	+		EFB2_04069	0.24	+1.3
4,280,049	+		EFB2_04069	0.24	+0.0
4,280,049	+		EFB2_04069	0.24	+1.5
4,280,049	+		EFB2_04069	0.24	+0.3
4,280,049	+		EFB2_04069	0.24	-1.7
4,280,049	+		EFB2_04069	0.24	-1.8
4,280,049	+		EFB2_04069	0.24	+0.2
4,280,050	-		EFB2_04069	0.24	+0.2
4,280,050	-		EFB2_04069	0.24	-2.3
4,280,050	-		EFB2_04069	0.24	+0.3
4,280,050	-		EFB2_04069	0.24	+0.2
4,280,050	-		EFB2_04069	0.24	+1.0
4,280,050	-		EFB2_04069	0.24	+0.6
4,280,050	-		EFB2_04069	0.24	-0.1
4,280,050	-		EFB2_04069	0.24	-0.3
4,280,050	-		EFB2_04069	0.24	+1.3
4,280,050	-		EFB2_04069	0.24	+0.9
4,280,050	-		EFB2_04069	0.24	+0.1
4,280,050	-		EFB2_04069	0.24	-1.1
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