Strain Fitness in Escherichia fergusonii Becca around EFB2_03505

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,654,448	+		EFB2_03503	0.87	-0.3
3,654,534	+				+1.3
3,654,629	+				-0.3
3,654,629	+				-0.5
3,654,630	-				-0.3
3,654,632	-				+1.3
3,654,655	-		EFB2_03504	0.10	+0.7
3,654,717	+		EFB2_03504	0.18	+1.7
3,654,792	-		EFB2_03504	0.27	-0.9
3,655,064	-		EFB2_03504	0.60	+2.3
3,655,154	+		EFB2_03504	0.71	-1.0
3,655,312	+				+0.3
3,655,385	+				-0.1
3,655,386	-				-0.0
3,655,386	-				-1.2
3,655,390	+				-0.8
3,655,390	+				+0.2
3,655,390	+				-0.3
3,655,390	+				-0.6
3,655,390	+				-0.2
3,655,391	-				+0.1
3,655,391	-				-2.8
3,655,391	-				-0.5
3,655,391	-				-2.7
3,655,391	-				-2.3
3,655,391	-				+0.1
3,655,391	-				+0.4
3,655,497	+				-0.7
3,655,543	+		EFB2_03505	0.14	+0.4
3,655,543	+		EFB2_03505	0.14	+1.0
3,655,544	-		EFB2_03505	0.14	+0.1
3,655,551	-		EFB2_03505	0.15	+0.4
3,655,555	-		EFB2_03505	0.15	-2.6
3,655,555	-		EFB2_03505	0.15	+0.5
3,655,582	-		EFB2_03505	0.17	-0.1
3,655,610	+		EFB2_03505	0.20	-1.2
3,655,620	+		EFB2_03505	0.21	-1.9
3,655,621	-		EFB2_03505	0.21	+1.4
3,655,621	-		EFB2_03505	0.21	-1.6
3,655,625	-		EFB2_03505	0.21	-1.3
3,655,748	+		EFB2_03505	0.32	-1.8
3,655,748	+		EFB2_03505	0.32	+1.4
3,655,749	-		EFB2_03505	0.32	-0.3
3,655,749	-		EFB2_03505	0.32	-1.6
3,655,749	-		EFB2_03505	0.32	-0.4
3,655,837	-		EFB2_03505	0.40	-1.5
3,655,935	+		EFB2_03505	0.49	+0.6
3,655,935	+		EFB2_03505	0.49	+2.0
3,655,935	+		EFB2_03505	0.49	+0.0
3,655,936	-		EFB2_03505	0.49	-1.0
3,655,937	+		EFB2_03505	0.49	+0.7
3,655,937	+		EFB2_03505	0.49	-1.4
3,655,937	+		EFB2_03505	0.49	+0.4
3,655,937	+		EFB2_03505	0.49	+0.5
3,655,937	+		EFB2_03505	0.49	-0.7
3,655,937	+		EFB2_03505	0.49	-0.5
3,655,937	+		EFB2_03505	0.49	+1.5
3,655,938	-		EFB2_03505	0.49	-2.3
3,655,938	-		EFB2_03505	0.49	-1.6
3,655,938	-		EFB2_03505	0.49	+0.7
3,655,946	+		EFB2_03505	0.50	-2.0
3,655,946	+		EFB2_03505	0.50	-0.4
3,655,996	+		EFB2_03505	0.54	+1.1
3,655,996	+		EFB2_03505	0.54	-1.4
3,656,010	+		EFB2_03505	0.55	-1.3
3,656,010	+		EFB2_03505	0.55	+0.3
3,656,010	+		EFB2_03505	0.55	+0.6
3,656,010	+		EFB2_03505	0.55	-1.6
3,656,010	+		EFB2_03505	0.55	-0.9
3,656,010	+		EFB2_03505	0.55	+1.9
3,656,010	+		EFB2_03505	0.55	-1.9
3,656,011	-		EFB2_03505	0.55	-0.9
3,656,011	-		EFB2_03505	0.55	-0.5
3,656,011	-		EFB2_03505	0.55	-1.3
3,656,011	-		EFB2_03505	0.55	+0.1
3,656,011	-		EFB2_03505	0.55	+1.5
3,656,011	-		EFB2_03505	0.55	-1.5
3,656,011	-		EFB2_03505	0.55	+1.3
3,656,011	-		EFB2_03505	0.55	-1.2
3,656,012	+		EFB2_03505	0.55	+1.7
3,656,012	+		EFB2_03505	0.55	+0.3
3,656,012	+		EFB2_03505	0.55	-1.7
3,656,012	+		EFB2_03505	0.55	+0.3
3,656,012	+		EFB2_03505	0.55	-0.6
3,656,012	+		EFB2_03505	0.55	+1.0
3,656,012	+		EFB2_03505	0.55	-0.3
3,656,012	+		EFB2_03505	0.55	-1.3
3,656,012	+		EFB2_03505	0.55	+0.8
3,656,012	+		EFB2_03505	0.55	-1.3
3,656,012	+		EFB2_03505	0.55	+1.6
3,656,013	-		EFB2_03505	0.55	+1.1
3,656,013	-		EFB2_03505	0.55	+1.3
3,656,013	-		EFB2_03505	0.55	-1.9
3,656,013	-		EFB2_03505	0.55	+2.2
3,656,013	-		EFB2_03505	0.55	+0.7
3,656,013	-		EFB2_03505	0.55	+0.4
3,656,013	-		EFB2_03505	0.55	+2.7
3,656,013	-		EFB2_03505	0.55	+0.9
3,656,013	-		EFB2_03505	0.55	-2.0
3,656,013	-		EFB2_03505	0.55	+1.0
3,656,013	-		EFB2_03505	0.55	+0.3
3,656,013	-		EFB2_03505	0.55	-1.0
3,656,013	-		EFB2_03505	0.55	-0.1
3,656,013	-		EFB2_03505	0.55	-1.5
3,656,013	-		EFB2_03505	0.55	+1.3
3,656,013	-		EFB2_03505	0.55	+1.3
3,656,013	-		EFB2_03505	0.55	+0.9
3,656,013	-		EFB2_03505	0.55	+0.3
3,656,013	-		EFB2_03505	0.55	-0.4
3,656,013	-		EFB2_03505	0.55	-1.4
3,656,013	-		EFB2_03505	0.55	+0.1
3,656,013	-		EFB2_03505	0.55	+0.7
3,656,013	-		EFB2_03505	0.55	+3.5
3,656,013	-		EFB2_03505	0.55	+1.7
3,656,013	-		EFB2_03505	0.55	-0.3
3,656,038	-		EFB2_03505	0.58	-3.7
3,656,085	+		EFB2_03505	0.62	+1.3
3,656,086	-		EFB2_03505	0.62	+1.4
3,656,141	+		EFB2_03505	0.67	-0.5
3,656,141	+		EFB2_03505	0.67	-0.9
3,656,141	+		EFB2_03505	0.67	-0.3
3,656,141	+		EFB2_03505	0.67	+0.5
3,656,141	+		EFB2_03505	0.67	+2.5
3,656,141	+		EFB2_03505	0.67	-2.9
3,656,141	+		EFB2_03505	0.67	-0.9
3,656,141	+		EFB2_03505	0.67	-1.3
3,656,141	+		EFB2_03505	0.67	+0.6
3,656,141	+		EFB2_03505	0.67	+0.3
3,656,141	+		EFB2_03505	0.67	-2.2
3,656,141	+		EFB2_03505	0.67	-0.9
3,656,141	+		EFB2_03505	0.67	-0.1
3,656,141	+		EFB2_03505	0.67	+0.5
3,656,142	-		EFB2_03505	0.67	-0.5
3,656,142	-		EFB2_03505	0.67	-0.0
3,656,142	-		EFB2_03505	0.67	-0.2
3,656,142	-		EFB2_03505	0.67	-1.7
3,656,142	-		EFB2_03505	0.67	-1.9
3,656,142	-		EFB2_03505	0.67	-2.0
3,656,142	-		EFB2_03505	0.67	-0.7
3,656,142	-		EFB2_03505	0.67	-2.8
3,656,142	-		EFB2_03505	0.67	-2.7
3,656,142	-		EFB2_03505	0.67	+2.3
3,656,168	-		EFB2_03505	0.69	+2.4
3,656,171	-		EFB2_03505	0.69	-1.3
3,656,230	-		EFB2_03505	0.75	-2.2
3,656,230	-		EFB2_03505	0.75	+2.3
3,656,304	+		EFB2_03505	0.81	+2.0
3,656,411	-				+0.9
3,656,427	+				+1.6
3,656,428	-				-2.9
3,656,428	-				+0.8
3,656,431	+				+4.1
3,656,431	+				-1.2
3,656,431	+				+1.3
3,656,522	+				+0.3
3,656,522	+				+1.6
3,656,523	-				+0.9
3,656,572	+				+1.0
3,656,641	-				-0.7
3,656,666	+				+0.9
3,656,666	+				+0.6
3,656,668	+				+1.0
3,656,719	+				-2.7
3,656,720	-				-0.2
3,656,724	-				+4.1
3,656,738	+				+0.9
3,656,738	+				+1.9
3,656,792	+				+1.0
3,656,792	+				-1.6
3,656,792	+				+2.3
3,656,793	-				-0.9
3,656,796	-				+2.8
3,656,796	-				-0.0
3,656,821	+				-0.7
3,656,821	+				-2.2
3,656,821	+				+1.4
3,656,822	-				-1.5
3,656,822	-				+0.0
3,656,826	-				+0.1
3,656,870	+				+0.1
3,656,870	+				-0.3
3,656,870	+				+1.8
3,656,870	+				-3.3
3,656,870	+				+0.5
3,656,871	-				-0.9
3,656,871	-				-0.7
3,656,871	-				-0.4
3,656,871	-				-1.0
3,656,901	+				+1.0
3,656,901	+				-0.4
3,656,901	+				+0.2
3,656,902	-				+0.0
3,656,902	-				-0.7
3,656,902	-				-2.4
3,656,902	-				+1.1
3,656,902	-				-0.6
3,656,902	-				+2.1
3,656,912	+				-0.4
3,656,912	+				-0.3
3,656,912	+				-0.7
3,656,912	+				+1.2
3,656,912	+				+1.0
3,656,913	-				-2.9
3,656,913	-				+1.9
3,656,913	-				-1.0
3,656,926	-				+1.3
3,656,930	+				-3.3
3,656,930	+				+1.0
3,656,930	+				+1.1
3,656,930	+				-2.6
3,656,931	-				+1.0
3,656,931	-				-0.5
3,656,931	-				-0.9
3,656,931	-				-0.1
3,656,931	-				+0.3
3,656,931	-				+1.9
3,656,931	-				-1.8
3,656,931	-				-0.5
3,656,931	-				+2.1
3,656,965	+				-1.6
3,656,965	+				-1.4
3,656,965	+				+0.3
3,656,965	+				-0.2
3,656,965	+				-2.6
3,656,965	+				-2.3
3,656,965	+				+0.9
3,656,965	+				-0.2
3,656,965	+				+0.7
3,656,965	+				-0.2
3,656,966	-				-0.3
3,656,966	-				-1.8
3,656,966	-				+0.2
3,656,966	-				+0.5
3,656,966	-				+0.8
3,656,966	-				+0.6
3,656,966	-				-0.3
3,656,966	-				-0.9
3,656,966	-				+0.4
3,656,966	-				+0.4
3,656,966	-				+1.4
3,656,966	-				-0.6
3,656,966	-				+0.6
3,656,966	-				+0.5
3,656,966	-				-0.4
3,656,966	-				-0.0
3,656,966	-				+0.3
3,656,985	-				+0.3
3,656,985	-				+1.4
3,656,985	-				+3.0
3,656,985	-				+1.7
3,657,002	+				+0.7
3,657,002	+				-1.1
3,657,002	+				-1.2
3,657,002	+				+0.3
3,657,002	+				+0.2
3,657,002	+				-0.4
3,657,002	+				-1.0
3,657,002	+				+0.1
3,657,002	+				+0.2
3,657,003	-				-0.8
3,657,003	-				-0.5
3,657,003	-				-2.0
3,657,003	-				+0.9
3,657,217	+		EFB2_03506	0.12	+1.2
3,657,217	+		EFB2_03506	0.12	+0.8
3,657,217	+		EFB2_03506	0.12	+0.7
3,657,217	+		EFB2_03506	0.12	+0.7
3,657,217	+		EFB2_03506	0.12	-1.0
3,657,217	+		EFB2_03506	0.12	+0.6
3,657,217	+		EFB2_03506	0.12	+1.6
3,657,217	+		EFB2_03506	0.12	-1.4
3,657,217	+		EFB2_03506	0.12	+0.5
3,657,217	+		EFB2_03506	0.12	+0.6
3,657,217	+		EFB2_03506	0.12	+0.3
3,657,217	+		EFB2_03506	0.12	-2.9
3,657,217	+		EFB2_03506	0.12	+0.2
3,657,218	-		EFB2_03506	0.12	+0.7
3,657,218	-		EFB2_03506	0.12	+0.5
3,657,218	-		EFB2_03506	0.12	+1.4
3,657,218	-		EFB2_03506	0.12	+0.4
3,657,218	-		EFB2_03506	0.12	+0.3
3,657,218	-		EFB2_03506	0.12	+1.1
3,657,218	-		EFB2_03506	0.12	-0.8
3,657,218	-		EFB2_03506	0.12	-0.6
3,657,220	+		EFB2_03506	0.13	+0.3
3,657,221	-		EFB2_03506	0.13	+0.4
3,657,246	+		EFB2_03506	0.13	-2.2
3,657,246	+		EFB2_03506	0.13	-0.4
3,657,246	+		EFB2_03506	0.13	-1.6
3,657,246	+		EFB2_03506	0.13	-0.1
3,657,246	+		EFB2_03506	0.13	+0.3
3,657,247	-		EFB2_03506	0.13	+0.2
3,657,247	-		EFB2_03506	0.13	+2.6
3,657,247	-		EFB2_03506	0.13	-1.1
3,657,247	-		EFB2_03506	0.13	+2.7
3,657,247	-		EFB2_03506	0.13	-0.4
3,657,247	-		EFB2_03506	0.13	+0.8
3,657,355	+		EFB2_03506	0.16	-1.9
3,657,356	-		EFB2_03506	0.16	+3.1
3,657,356	-		EFB2_03506	0.16	+2.1
3,657,425	+		EFB2_03506	0.18	-1.8
3,657,425	+		EFB2_03506	0.18	-0.1
3,657,426	-		EFB2_03506	0.18	-3.9