Strain Fitness in Escherichia fergusonii Becca around EFB2_03492

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,640,558	+		EFB2_03491	0.24	-1.5
3,640,579	+		EFB2_03491	0.26	-2.3
3,640,579	+		EFB2_03491	0.26	-1.9
3,640,579	+		EFB2_03491	0.26	+0.4
3,640,579	+		EFB2_03491	0.26	-1.1
3,640,579	+		EFB2_03491	0.26	+0.5
3,640,579	+		EFB2_03491	0.26	+0.6
3,640,579	+		EFB2_03491	0.26	-1.4
3,640,579	+		EFB2_03491	0.26	+0.6
3,640,580	-		EFB2_03491	0.26	-0.4
3,640,580	-		EFB2_03491	0.26	+1.6
3,640,580	-		EFB2_03491	0.26	+1.2
3,640,580	-		EFB2_03491	0.26	+1.7
3,640,580	-		EFB2_03491	0.26	+0.1
3,640,580	-		EFB2_03491	0.26	+0.9
3,640,599	+		EFB2_03491	0.27	+0.1
3,640,599	+		EFB2_03491	0.27	+0.6
3,640,599	+		EFB2_03491	0.27	-2.8
3,640,599	+		EFB2_03491	0.27	-3.1
3,640,599	+		EFB2_03491	0.27	+2.3
3,640,599	+		EFB2_03491	0.27	-1.7
3,640,599	+		EFB2_03491	0.27	-0.4
3,640,599	+		EFB2_03491	0.27	-1.2
3,640,599	+		EFB2_03491	0.27	-0.0
3,640,599	+		EFB2_03491	0.27	+0.9
3,640,599	+		EFB2_03491	0.27	+1.8
3,640,599	+		EFB2_03491	0.27	-0.1
3,640,599	+		EFB2_03491	0.27	-0.7
3,640,599	+		EFB2_03491	0.27	+0.0
3,640,599	+		EFB2_03491	0.27	-0.5
3,640,600	-		EFB2_03491	0.27	+4.6
3,640,600	-		EFB2_03491	0.27	-0.0
3,640,600	-		EFB2_03491	0.27	+0.3
3,640,600	-		EFB2_03491	0.27	+0.3
3,640,600	-		EFB2_03491	0.27	-0.1
3,640,600	-		EFB2_03491	0.27	+0.3
3,640,600	-		EFB2_03491	0.27	-2.2
3,640,600	-		EFB2_03491	0.27	-1.0
3,640,600	-		EFB2_03491	0.27	+2.4
3,640,600	-		EFB2_03491	0.27	+0.6
3,640,600	-		EFB2_03491	0.27	+0.9
3,640,600	-		EFB2_03491	0.27	+2.4
3,640,600	-		EFB2_03491	0.27	-0.8
3,640,600	-		EFB2_03491	0.27	-0.9
3,640,600	-		EFB2_03491	0.27	-3.6
3,640,600	-		EFB2_03491	0.27	-0.9
3,640,600	-		EFB2_03491	0.27	-0.1
3,640,600	-		EFB2_03491	0.27	+0.1
3,640,600	-		EFB2_03491	0.27	-2.3
3,640,600	-		EFB2_03491	0.27	-0.1
3,640,600	-		EFB2_03491	0.27	+1.2
3,640,600	-		EFB2_03491	0.27	-1.8
3,640,600	-		EFB2_03491	0.27	-1.2
3,640,600	-		EFB2_03491	0.27	+0.8
3,640,600	-		EFB2_03491	0.27	-3.6
3,640,600	-		EFB2_03491	0.27	+1.6
3,640,600	-		EFB2_03491	0.27	-0.3
3,640,600	-		EFB2_03491	0.27	+0.3
3,640,604	+		EFB2_03491	0.28	-1.7
3,640,605	-		EFB2_03491	0.28	-2.4
3,640,605	-		EFB2_03491	0.28	-0.9
3,640,632	-		EFB2_03491	0.30	+1.3
3,640,651	+		EFB2_03491	0.32	-0.0
3,640,651	+		EFB2_03491	0.32	+2.3
3,640,651	+		EFB2_03491	0.32	+0.1
3,640,651	+		EFB2_03491	0.32	+0.4
3,640,651	+		EFB2_03491	0.32	-0.7
3,640,651	+		EFB2_03491	0.32	+0.3
3,640,652	-		EFB2_03491	0.32	-0.7
3,640,652	-		EFB2_03491	0.32	-0.3
3,640,652	-		EFB2_03491	0.32	-0.2
3,640,652	-		EFB2_03491	0.32	+0.4
3,640,724	+		EFB2_03491	0.38	+0.2
3,640,724	+		EFB2_03491	0.38	-2.0
3,640,724	+		EFB2_03491	0.38	+0.0
3,640,724	+		EFB2_03491	0.38	-1.7
3,640,724	+		EFB2_03491	0.38	+0.9
3,640,724	+		EFB2_03491	0.38	+0.2
3,640,724	+		EFB2_03491	0.38	-3.2
3,640,724	+		EFB2_03491	0.38	-0.7
3,640,724	+		EFB2_03491	0.38	-0.2
3,640,725	-		EFB2_03491	0.38	-1.2
3,640,725	-		EFB2_03491	0.38	+0.2
3,640,725	-		EFB2_03491	0.38	+0.2
3,640,725	-		EFB2_03491	0.38	-0.3
3,640,725	-		EFB2_03491	0.38	-2.7
3,640,725	-		EFB2_03491	0.38	-1.4
3,640,725	-		EFB2_03491	0.38	-0.1
3,640,725	-		EFB2_03491	0.38	-1.2
3,640,725	-		EFB2_03491	0.38	+0.1
3,640,725	-		EFB2_03491	0.38	+0.3
3,640,729	+		EFB2_03491	0.39	-2.7
3,640,729	+		EFB2_03491	0.39	+0.6
3,640,729	+		EFB2_03491	0.39	+0.9
3,640,729	+		EFB2_03491	0.39	-0.2
3,640,729	+		EFB2_03491	0.39	+1.0
3,640,729	+		EFB2_03491	0.39	-4.3
3,640,729	+		EFB2_03491	0.39	+0.2
3,640,729	+		EFB2_03491	0.39	-1.0
3,640,729	+		EFB2_03491	0.39	-1.7
3,640,729	+		EFB2_03491	0.39	-2.3
3,640,729	+		EFB2_03491	0.39	-1.0
3,640,729	+		EFB2_03491	0.39	+0.9
3,640,729	+		EFB2_03491	0.39	+1.8
3,640,729	+		EFB2_03491	0.39	-0.9
3,640,729	+		EFB2_03491	0.39	+1.0
3,640,729	+		EFB2_03491	0.39	+2.3
3,640,729	+		EFB2_03491	0.39	+0.9
3,640,729	+		EFB2_03491	0.39	-1.3
3,640,729	+		EFB2_03491	0.39	+0.7
3,640,730	-		EFB2_03491	0.39	-0.1
3,640,730	-		EFB2_03491	0.39	-2.7
3,640,730	-		EFB2_03491	0.39	+1.1
3,640,730	-		EFB2_03491	0.39	+1.0
3,640,730	-		EFB2_03491	0.39	+0.8
3,640,730	-		EFB2_03491	0.39	+1.9
3,640,730	-		EFB2_03491	0.39	-3.0
3,640,730	-		EFB2_03491	0.39	+0.9
3,640,730	-		EFB2_03491	0.39	-0.7
3,640,730	-		EFB2_03491	0.39	+0.5
3,640,730	-		EFB2_03491	0.39	+1.2
3,640,730	-		EFB2_03491	0.39	+1.3
3,640,730	-		EFB2_03491	0.39	-0.9
3,640,730	-		EFB2_03491	0.39	-1.9
3,640,730	-		EFB2_03491	0.39	-1.2
3,640,730	-		EFB2_03491	0.39	+1.1
3,640,730	-		EFB2_03491	0.39	-0.2
3,640,828	+		EFB2_03491	0.47	-1.8
3,640,829	-		EFB2_03491	0.47	+0.6
3,640,829	-		EFB2_03491	0.47	+1.1
3,640,963	-		EFB2_03491	0.59	+2.0
3,641,018	+		EFB2_03491	0.63	+0.3
3,641,018	+		EFB2_03491	0.63	+0.5
3,641,018	+		EFB2_03491	0.63	-1.9
3,641,018	+		EFB2_03491	0.63	+0.6
3,641,018	+		EFB2_03491	0.63	-2.2
3,641,018	+		EFB2_03491	0.63	-1.8
3,641,018	+		EFB2_03491	0.63	-0.2
3,641,018	+		EFB2_03491	0.63	-1.1
3,641,018	+		EFB2_03491	0.63	+1.3
3,641,019	-		EFB2_03491	0.64	-0.0
3,641,019	-		EFB2_03491	0.64	-2.4
3,641,019	-		EFB2_03491	0.64	+0.5
3,641,019	-		EFB2_03491	0.64	-0.8
3,641,019	-		EFB2_03491	0.64	+3.6
3,641,019	-		EFB2_03491	0.64	-2.4
3,641,019	-		EFB2_03491	0.64	+1.2
3,641,019	-		EFB2_03491	0.64	-1.1
3,641,019	-		EFB2_03491	0.64	-2.5
3,641,019	-		EFB2_03491	0.64	-1.1
3,641,028	+		EFB2_03491	0.64	-4.2
3,641,028	+		EFB2_03491	0.64	+1.8
3,641,029	-		EFB2_03491	0.64	+1.3
3,641,029	-		EFB2_03491	0.64	+1.6
3,641,029	-		EFB2_03491	0.64	-0.6
3,641,029	-		EFB2_03491	0.64	+1.2
3,641,059	+		EFB2_03491	0.67	+0.3
3,641,059	+		EFB2_03491	0.67	-1.2
3,641,059	+		EFB2_03491	0.67	+3.0
3,641,060	-		EFB2_03491	0.67	+0.3
3,641,060	-		EFB2_03491	0.67	-3.3
3,641,068	+		EFB2_03491	0.68	+0.4
3,641,068	+		EFB2_03491	0.68	-1.0
3,641,068	+		EFB2_03491	0.68	-2.4
3,641,068	+		EFB2_03491	0.68	-0.8
3,641,068	+		EFB2_03491	0.68	-1.2
3,641,069	-		EFB2_03491	0.68	-1.3
3,641,128	+		EFB2_03491	0.73	+1.3
3,641,128	+		EFB2_03491	0.73	+0.3
3,641,128	+		EFB2_03491	0.73	-1.3
3,641,128	+		EFB2_03491	0.73	+1.7
3,641,128	+		EFB2_03491	0.73	-1.8
3,641,128	+		EFB2_03491	0.73	-1.3
3,641,129	-		EFB2_03491	0.73	-0.4
3,641,129	-		EFB2_03491	0.73	+0.2
3,641,129	-		EFB2_03491	0.73	-0.0
3,641,129	-		EFB2_03491	0.73	+2.8
3,641,129	-		EFB2_03491	0.73	+0.3
3,641,129	-		EFB2_03491	0.73	+1.3
3,641,129	-		EFB2_03491	0.73	-0.3
3,641,162	+		EFB2_03491	0.76	+1.2
3,641,162	+		EFB2_03491	0.76	+0.0
3,641,162	+		EFB2_03491	0.76	-2.3
3,641,163	-		EFB2_03491	0.76	-1.0
3,641,186	-		EFB2_03491	0.78	+1.3
3,641,186	-		EFB2_03491	0.78	+1.4
3,641,191	+		EFB2_03491	0.78	-0.0
3,641,191	+		EFB2_03491	0.78	+0.1
3,641,191	+		EFB2_03491	0.78	+0.4
3,641,191	+		EFB2_03491	0.78	+0.8
3,641,192	-		EFB2_03491	0.78	-0.4
3,641,192	-		EFB2_03491	0.78	-1.3
3,641,255	-		EFB2_03491	0.84	+0.3
3,641,282	-		EFB2_03491	0.86	-1.2
3,641,282	-		EFB2_03491	0.86	+0.4
3,641,298	+		EFB2_03491	0.88	-1.9
3,641,298	+		EFB2_03491	0.88	+1.3
3,641,298	+		EFB2_03491	0.88	-0.0
3,641,342	+				-3.0
3,641,343	-				+1.3
3,641,388	-				-0.1
3,641,432	+				-1.1
3,641,432	+				+1.5
3,641,432	+				-0.5
3,641,445	+				+1.5
3,641,450	+				-2.9
3,641,450	+				-0.5
3,641,451	-				+0.0
3,641,479	+				-1.2
3,641,479	+				+0.0
3,641,479	+				-2.5
3,641,479	+				-2.7
3,641,479	+				-2.0
3,641,479	+				+0.8
3,641,480	-				+0.9
3,641,480	-				-0.5
3,641,480	-				+0.3
3,641,480	-				-0.5
3,641,480	-				-0.5
3,641,481	+				+0.2
3,641,481	+				-1.2
3,641,481	+				-3.5
3,641,481	+				-2.9
3,641,482	-				+1.1
3,641,492	+				-2.5
3,641,492	+				+0.9
3,641,495	+				-2.1
3,641,496	-				-1.5
3,641,515	+				-0.4
3,641,516	-				+1.3
3,641,535	+				+0.5
3,641,535	+				-1.5
3,641,535	+				+1.1
3,641,536	-				+0.7
3,641,536	-				-1.6
3,641,564	+				-0.5
3,641,565	-				+0.1
3,641,592	+				-2.6
3,641,592	+				-0.2
3,641,592	+				-0.4
3,641,592	+				-0.2
3,641,592	+				+0.2
3,641,593	-				-0.3
3,641,593	-				-0.0
3,641,593	-				-1.1
3,641,593	-				-0.9
3,641,593	-				+1.0
3,641,593	-				+0.7
3,641,670	+		EFB2_03492	0.11	+3.1
3,641,670	+		EFB2_03492	0.11	+1.0
3,641,671	-		EFB2_03492	0.11	-2.1
3,641,671	-		EFB2_03492	0.11	+2.4
3,641,734	+		EFB2_03492	0.17	+2.6
3,641,741	+		EFB2_03492	0.18	+0.2
3,641,741	+		EFB2_03492	0.18	-1.4
3,641,741	+		EFB2_03492	0.18	-1.3
3,641,741	+		EFB2_03492	0.18	+1.2
3,641,741	+		EFB2_03492	0.18	-1.2
3,641,742	-		EFB2_03492	0.18	+0.1
3,641,742	-		EFB2_03492	0.18	+2.0
3,641,742	-		EFB2_03492	0.18	-2.5
3,641,742	-		EFB2_03492	0.18	+1.5
3,641,742	-		EFB2_03492	0.18	+0.5
3,641,742	-		EFB2_03492	0.18	-0.9
3,641,742	-		EFB2_03492	0.18	-0.6
3,641,742	-		EFB2_03492	0.18	-1.1
3,641,842	+		EFB2_03492	0.27	+1.1
3,641,912	+		EFB2_03492	0.33	-0.1
3,641,946	+		EFB2_03492	0.36	+0.7
3,641,946	+		EFB2_03492	0.36	+1.8
3,641,947	-		EFB2_03492	0.36	-0.4
3,641,947	-		EFB2_03492	0.36	-2.9
3,641,947	-		EFB2_03492	0.36	+0.2
3,641,947	-		EFB2_03492	0.36	+0.5
3,641,947	-		EFB2_03492	0.36	-0.0
3,641,947	-		EFB2_03492	0.36	-2.9
3,641,948	+		EFB2_03492	0.37	-0.7
3,641,949	-		EFB2_03492	0.37	-0.4
3,641,973	+		EFB2_03492	0.39	+2.7
3,641,974	-		EFB2_03492	0.39	+0.3
3,641,974	-		EFB2_03492	0.39	-1.3
3,641,974	-		EFB2_03492	0.39	+0.6
3,641,974	-		EFB2_03492	0.39	+0.2
3,642,000	-		EFB2_03492	0.41	-2.1
3,642,000	-		EFB2_03492	0.41	+0.6
3,642,024	-		EFB2_03492	0.44	+1.9
3,642,024	-		EFB2_03492	0.44	+0.7
3,642,045	+		EFB2_03492	0.45	-2.2
3,642,045	+		EFB2_03492	0.45	-0.5
3,642,045	+		EFB2_03492	0.45	+1.1
3,642,045	+		EFB2_03492	0.45	+0.4
3,642,045	+		EFB2_03492	0.45	-0.3
3,642,046	-		EFB2_03492	0.46	+1.1
3,642,046	-		EFB2_03492	0.46	-0.1
3,642,046	-		EFB2_03492	0.46	-0.5
3,642,046	-		EFB2_03492	0.46	+0.1
3,642,046	-		EFB2_03492	0.46	+0.3
3,642,046	-		EFB2_03492	0.46	+0.5
3,642,046	-		EFB2_03492	0.46	+0.4
3,642,049	+		EFB2_03492	0.46	-0.2
3,642,049	+		EFB2_03492	0.46	+0.2
3,642,049	+		EFB2_03492	0.46	-0.9
3,642,049	+		EFB2_03492	0.46	+1.3
3,642,049	+		EFB2_03492	0.46	+1.6
3,642,049	+		EFB2_03492	0.46	+0.2
3,642,049	+		EFB2_03492	0.46	-1.5
3,642,050	-		EFB2_03492	0.46	+0.5
3,642,050	-		EFB2_03492	0.46	-0.1
3,642,084	+		EFB2_03492	0.49	+0.0
3,642,084	+		EFB2_03492	0.49	-0.4
3,642,084	+		EFB2_03492	0.49	+0.2
3,642,084	+		EFB2_03492	0.49	+0.1
3,642,084	+		EFB2_03492	0.49	-0.0
3,642,084	+		EFB2_03492	0.49	+2.0
3,642,084	+		EFB2_03492	0.49	+0.2
3,642,085	-		EFB2_03492	0.49	+1.0
3,642,085	-		EFB2_03492	0.49	-2.2
3,642,085	-		EFB2_03492	0.49	-0.3
3,642,085	-		EFB2_03492	0.49	+1.7
3,642,085	-		EFB2_03492	0.49	-0.1
3,642,150	-		EFB2_03492	0.55	-2.4
3,642,150	-		EFB2_03492	0.55	-1.5
3,642,179	-		EFB2_03492	0.58	+1.3
3,642,179	-		EFB2_03492	0.58	-0.4
3,642,179	-		EFB2_03492	0.58	-0.4
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