Strain Fitness in Escherichia fergusonii Becca around EFB2_03072

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,210,433	+		EFB2_03070	0.61	-0.2
3,210,433	+		EFB2_03070	0.61	-1.6
3,210,433	+		EFB2_03070	0.61	-0.0
3,210,453	-		EFB2_03070	0.66	+0.3
3,210,473	+		EFB2_03070	0.71	+0.0
3,210,531	+		EFB2_03070	0.86	+0.8
3,210,531	+		EFB2_03070	0.86	-0.3
3,210,531	+		EFB2_03070	0.86	+0.4
3,210,532	-		EFB2_03070	0.87	+2.3
3,210,532	-		EFB2_03070	0.87	-1.6
3,210,532	-		EFB2_03070	0.87	-0.8
3,210,572	-				+1.1
3,210,572	-				-1.4
3,210,618	+				+0.1
3,210,618	+				-0.3
3,210,618	+				-0.7
3,210,619	-				-0.4
3,210,672	+		EFB2_03071	0.10	+1.3
3,210,672	+		EFB2_03071	0.10	-0.3
3,210,708	+		EFB2_03071	0.15	+0.1
3,210,708	+		EFB2_03071	0.15	-0.2
3,210,708	+		EFB2_03071	0.15	-0.5
3,210,715	+		EFB2_03071	0.15	+2.2
3,210,715	+		EFB2_03071	0.15	-2.9
3,210,715	+		EFB2_03071	0.15	+0.1
3,210,715	+		EFB2_03071	0.15	-3.7
3,210,715	+		EFB2_03071	0.15	-0.9
3,210,715	+		EFB2_03071	0.15	-0.2
3,210,715	+		EFB2_03071	0.15	+0.2
3,210,715	+		EFB2_03071	0.15	+0.4
3,210,715	+		EFB2_03071	0.15	+0.3
3,210,715	+		EFB2_03071	0.15	+1.8
3,210,716	-		EFB2_03071	0.16	+2.1
3,210,716	-		EFB2_03071	0.16	+1.8
3,210,716	-		EFB2_03071	0.16	+1.6
3,210,716	-		EFB2_03071	0.16	-0.3
3,210,723	+		EFB2_03071	0.16	+0.0
3,210,746	+		EFB2_03071	0.19	-0.9
3,210,771	+		EFB2_03071	0.22	-0.9
3,210,771	+		EFB2_03071	0.22	-0.2
3,210,771	+		EFB2_03071	0.22	-0.5
3,210,771	+		EFB2_03071	0.22	+0.4
3,210,771	+		EFB2_03071	0.22	+0.4
3,210,771	+		EFB2_03071	0.22	+2.1
3,210,772	-		EFB2_03071	0.23	-0.5
3,210,772	-		EFB2_03071	0.23	-2.0
3,210,772	-		EFB2_03071	0.23	+0.2
3,210,772	-		EFB2_03071	0.23	-1.2
3,210,772	-		EFB2_03071	0.23	-2.7
3,210,772	-		EFB2_03071	0.23	-1.7
3,210,772	-		EFB2_03071	0.23	-0.3
3,210,772	-		EFB2_03071	0.23	-1.4
3,210,772	-		EFB2_03071	0.23	-1.1
3,210,777	-		EFB2_03071	0.23	+0.2
3,210,940	+		EFB2_03071	0.44	+1.7
3,210,941	-		EFB2_03071	0.44	-1.6
3,210,950	+		EFB2_03071	0.45	+0.1
3,210,950	+		EFB2_03071	0.45	-3.2
3,210,950	+		EFB2_03071	0.45	+1.9
3,210,950	+		EFB2_03071	0.45	-0.5
3,210,951	-		EFB2_03071	0.45	+1.5
3,210,982	+		EFB2_03071	0.49	+0.5
3,210,982	+		EFB2_03071	0.49	+0.3
3,210,982	+		EFB2_03071	0.49	+1.1
3,210,982	+		EFB2_03071	0.49	+1.2
3,210,982	+		EFB2_03071	0.49	+2.3
3,210,982	+		EFB2_03071	0.49	+0.1
3,210,982	+		EFB2_03071	0.49	-2.5
3,210,982	+		EFB2_03071	0.49	+1.7
3,210,982	+		EFB2_03071	0.49	+1.8
3,210,982	+		EFB2_03071	0.49	-2.3
3,210,982	+		EFB2_03071	0.49	-2.9
3,210,982	+		EFB2_03071	0.49	+0.7
3,210,983	-		EFB2_03071	0.49	-1.9
3,210,983	-		EFB2_03071	0.49	+0.9
3,210,983	-		EFB2_03071	0.49	-1.6
3,210,983	-		EFB2_03071	0.49	+1.1
3,210,983	-		EFB2_03071	0.49	-2.6
3,210,983	-		EFB2_03071	0.49	+1.8
3,210,983	-		EFB2_03071	0.49	+3.0
3,210,983	-		EFB2_03071	0.49	+0.7
3,210,983	-		EFB2_03071	0.49	-0.2
3,210,983	-		EFB2_03071	0.49	+2.5
3,210,983	-		EFB2_03071	0.49	-1.4
3,210,983	-		EFB2_03071	0.49	-0.1
3,210,985	+		EFB2_03071	0.49	+0.6
3,210,985	+		EFB2_03071	0.49	+1.9
3,210,985	+		EFB2_03071	0.49	+0.5
3,210,985	+		EFB2_03071	0.49	-0.5
3,210,985	+		EFB2_03071	0.49	+0.3
3,210,985	+		EFB2_03071	0.49	-1.0
3,210,985	+		EFB2_03071	0.49	+0.7
3,210,985	+		EFB2_03071	0.49	+0.3
3,210,985	+		EFB2_03071	0.49	-1.8
3,210,985	+		EFB2_03071	0.49	-0.2
3,210,985	+		EFB2_03071	0.49	-3.3
3,210,985	+		EFB2_03071	0.49	+0.4
3,210,985	+		EFB2_03071	0.49	+0.9
3,210,985	+		EFB2_03071	0.49	-1.4
3,210,985	+		EFB2_03071	0.49	-1.3
3,210,985	+		EFB2_03071	0.49	-0.2
3,210,985	+		EFB2_03071	0.49	-1.3
3,210,985	+		EFB2_03071	0.49	+2.3
3,210,985	+		EFB2_03071	0.49	-0.0
3,210,985	+		EFB2_03071	0.49	-0.8
3,210,985	+		EFB2_03071	0.49	+0.6
3,210,985	+		EFB2_03071	0.49	+1.0
3,210,985	+		EFB2_03071	0.49	-2.9
3,210,985	+		EFB2_03071	0.49	-1.0
3,210,985	+		EFB2_03071	0.49	+0.6
3,210,985	+		EFB2_03071	0.49	-2.8
3,210,985	+		EFB2_03071	0.49	-0.4
3,210,985	+		EFB2_03071	0.49	-0.7
3,210,985	+		EFB2_03071	0.49	+0.3
3,210,985	+		EFB2_03071	0.49	+0.6
3,210,985	+		EFB2_03071	0.49	-0.9
3,210,985	+		EFB2_03071	0.49	+3.7
3,210,985	+		EFB2_03071	0.49	-2.2
3,210,985	+		EFB2_03071	0.49	+1.9
3,210,985	+		EFB2_03071	0.49	+0.8
3,210,985	+		EFB2_03071	0.49	-0.7
3,210,985	+		EFB2_03071	0.49	+1.7
3,210,985	+		EFB2_03071	0.49	-3.4
3,210,985	+		EFB2_03071	0.49	-1.7
3,210,985	+		EFB2_03071	0.49	+0.3
3,210,985	+		EFB2_03071	0.49	+0.5
3,210,985	+		EFB2_03071	0.49	-0.2
3,210,985	+		EFB2_03071	0.49	+1.4
3,210,986	-		EFB2_03071	0.49	+0.3
3,210,986	-		EFB2_03071	0.49	+2.3
3,210,986	-		EFB2_03071	0.49	-2.9
3,210,986	-		EFB2_03071	0.49	-2.2
3,210,986	-		EFB2_03071	0.49	+1.2
3,210,986	-		EFB2_03071	0.49	-1.5
3,210,986	-		EFB2_03071	0.49	-0.5
3,210,986	-		EFB2_03071	0.49	-2.0
3,210,986	-		EFB2_03071	0.49	-0.1
3,210,986	-		EFB2_03071	0.49	-0.5
3,210,986	-		EFB2_03071	0.49	+0.7
3,210,986	-		EFB2_03071	0.49	+1.4
3,210,986	-		EFB2_03071	0.49	-2.7
3,210,986	-		EFB2_03071	0.49	-1.0
3,210,986	-		EFB2_03071	0.49	+2.0
3,210,986	-		EFB2_03071	0.49	+1.3
3,210,986	-		EFB2_03071	0.49	-2.4
3,210,986	-		EFB2_03071	0.49	+0.5
3,210,986	-		EFB2_03071	0.49	-1.3
3,210,986	-		EFB2_03071	0.49	-1.1
3,210,986	-		EFB2_03071	0.49	+0.7
3,210,986	-		EFB2_03071	0.49	-0.7
3,210,986	-		EFB2_03071	0.49	+0.8
3,210,986	-		EFB2_03071	0.49	-0.5
3,210,986	-		EFB2_03071	0.49	-1.2
3,210,986	-		EFB2_03071	0.49	-1.1
3,210,986	-		EFB2_03071	0.49	-0.3
3,210,986	-		EFB2_03071	0.49	-2.0
3,210,986	-		EFB2_03071	0.49	-0.9
3,210,986	-		EFB2_03071	0.49	+0.2
3,210,986	-		EFB2_03071	0.49	+1.1
3,210,986	-		EFB2_03071	0.49	-1.6
3,210,986	-		EFB2_03071	0.49	-2.4
3,210,986	-		EFB2_03071	0.49	-0.8
3,210,989	+		EFB2_03071	0.50	-0.3
3,210,989	+		EFB2_03071	0.50	-1.6
3,210,990	-		EFB2_03071	0.50	+0.0
3,211,036	-		EFB2_03071	0.56	-0.0
3,211,119	-		EFB2_03071	0.66	-0.1
3,211,124	-		EFB2_03071	0.67	+0.3
3,211,136	+		EFB2_03071	0.68	-1.6
3,211,136	+		EFB2_03071	0.68	+1.0
3,211,136	+		EFB2_03071	0.68	+0.0
3,211,136	+		EFB2_03071	0.68	-0.9
3,211,136	+		EFB2_03071	0.68	+0.4
3,211,137	-		EFB2_03071	0.68	-0.2
3,211,137	-		EFB2_03071	0.68	+0.1
3,211,137	-		EFB2_03071	0.68	-1.9
3,211,160	+		EFB2_03071	0.71	+0.6
3,211,161	-		EFB2_03071	0.71	-0.6
3,211,290	+		EFB2_03071	0.87	-1.0
3,211,331	+				-2.0
3,211,331	+				+3.0
3,211,331	+				-3.0
3,211,331	+				+1.0
3,211,332	-				-0.1
3,211,332	-				-1.9
3,211,332	-				-0.4
3,211,366	+				-1.2
3,211,366	+				-0.1
3,211,366	+				+0.1
3,211,366	+				-1.5
3,211,366	+				+1.6
3,211,366	+				-1.7
3,211,366	+				-0.7
3,211,366	+				-1.3
3,211,366	+				+1.4
3,211,366	+				+0.1
3,211,366	+				+3.0
3,211,366	+				+0.8
3,211,366	+				-0.0
3,211,366	+				-0.1
3,211,366	+				+1.1
3,211,366	+				+1.6
3,211,366	+				-1.8
3,211,366	+				-0.9
3,211,366	+				+0.8
3,211,367	-				-0.1
3,211,367	-				+1.1
3,211,367	-				-2.6
3,211,367	-				+1.0
3,211,367	-				-1.0
3,211,367	-				+1.3
3,211,367	-				-1.5
3,211,367	-				-2.7
3,211,367	-				-2.4
3,211,367	-				+0.3
3,211,367	-				+0.2
3,211,367	-				-1.4
3,211,400	+				-1.3
3,211,400	+				+0.9
3,211,401	-				-0.3
3,211,401	-				-1.5
3,211,401	-				-1.2
3,211,430	+				-1.8
3,211,430	+				+0.6
3,211,430	+				-1.8
3,211,431	-				+0.2
3,211,431	-				-0.3
3,211,509	+		EFB2_03072	0.18	+1.3
3,211,509	+		EFB2_03072	0.18	-0.2
3,211,510	-		EFB2_03072	0.18	-0.5
3,211,510	-		EFB2_03072	0.18	+0.6
3,211,510	-		EFB2_03072	0.18	-0.5
3,211,510	-		EFB2_03072	0.18	+2.3
3,211,510	-		EFB2_03072	0.18	+1.6
3,211,510	-		EFB2_03072	0.18	+0.6
3,211,541	+		EFB2_03072	0.24	-0.9
3,211,541	+		EFB2_03072	0.24	+0.4
3,211,541	+		EFB2_03072	0.24	+1.1
3,211,541	+		EFB2_03072	0.24	+0.8
3,211,541	+		EFB2_03072	0.24	-2.7
3,211,542	-		EFB2_03072	0.24	-1.5
3,211,542	-		EFB2_03072	0.24	+2.3
3,211,542	-		EFB2_03072	0.24	-1.8
3,211,542	-		EFB2_03072	0.24	+1.1
3,211,542	-		EFB2_03072	0.24	-1.3
3,211,731	-		EFB2_03072	0.56	-0.9
3,211,791	+		EFB2_03072	0.66	+0.3
3,211,792	-		EFB2_03072	0.66	-0.2
3,211,857	+		EFB2_03072	0.77	-1.9
3,211,857	+		EFB2_03072	0.77	-1.7
3,211,857	+		EFB2_03072	0.77	+0.3
3,211,857	+		EFB2_03072	0.77	-1.7
3,211,857	+		EFB2_03072	0.77	+1.7
3,211,857	+		EFB2_03072	0.77	-2.2
3,211,858	-		EFB2_03072	0.77	-0.9
3,211,858	-		EFB2_03072	0.77	-1.5
3,211,858	-		EFB2_03072	0.77	-1.3
3,211,858	-		EFB2_03072	0.77	-1.0
3,211,858	-		EFB2_03072	0.77	-1.1
3,211,858	-		EFB2_03072	0.77	+0.7
3,211,858	-		EFB2_03072	0.77	-1.4
3,211,858	-		EFB2_03072	0.77	+3.1
3,211,858	-		EFB2_03072	0.77	-0.9
3,211,858	-		EFB2_03072	0.77	-1.0
3,211,858	-		EFB2_03072	0.77	+0.2
3,211,858	-		EFB2_03072	0.77	+1.2
3,211,858	-		EFB2_03072	0.77	-1.5
3,211,910	+		EFB2_03072	0.86	-0.4
3,211,910	+		EFB2_03072	0.86	-1.3
3,211,910	+		EFB2_03072	0.86	+0.3
3,211,911	-		EFB2_03072	0.86	+0.3
3,211,911	-		EFB2_03072	0.86	+0.7
3,211,911	-		EFB2_03072	0.86	+1.8
3,211,911	-		EFB2_03072	0.86	+0.7
3,211,911	-		EFB2_03072	0.86	-0.8
3,211,911	-		EFB2_03072	0.86	+0.4
3,211,989	+				+0.4
3,211,989	+				-0.5
3,211,989	+				-1.3
3,211,989	+				-0.7
3,211,989	+				+1.3
3,211,989	+				+1.9
3,211,989	+				-0.3
3,211,989	+				-1.1
3,211,989	+				+0.2
3,211,989	+				-0.4
3,211,989	+				-3.5
3,211,989	+				-0.3
3,211,990	-				+0.1
3,211,990	-				+2.3
3,211,990	-				+0.2
3,211,990	-				-0.3
3,211,990	-				-2.0
3,211,990	-				-0.4
3,211,990	-				-3.5
3,211,990	-				-1.6
3,211,990	-				+1.2
3,211,990	-				-0.7
3,211,990	-				+0.7
3,211,990	-				-1.0
3,212,046	+				-3.1
3,212,047	-				-1.1
3,212,047	-				+1.1
3,212,064	+		EFB2_03073	0.13	+1.8
3,212,064	+		EFB2_03073	0.13	-0.1
3,212,065	-		EFB2_03073	0.13	-0.9
3,212,065	-		EFB2_03073	0.13	-1.5
3,212,065	-		EFB2_03073	0.13	-0.7
3,212,065	-		EFB2_03073	0.13	-0.7
3,212,065	-		EFB2_03073	0.13	-0.0
3,212,065	-		EFB2_03073	0.13	-0.3
3,212,065	-		EFB2_03073	0.13	+0.8
3,212,074	-		EFB2_03073	0.15	-1.7
3,212,074	-		EFB2_03073	0.15	-3.3
3,212,186	+		EFB2_03073	0.37	+1.0
3,212,186	+		EFB2_03073	0.37	-0.4
3,212,214	-		EFB2_03073	0.43	+0.0
3,212,214	-		EFB2_03073	0.43	+1.0
3,212,214	-		EFB2_03073	0.43	-2.1
3,212,217	+		EFB2_03073	0.43	-0.8
3,212,217	+		EFB2_03073	0.43	+2.2
3,212,217	+		EFB2_03073	0.43	-1.3
3,212,217	+		EFB2_03073	0.43	-2.2
3,212,217	+		EFB2_03073	0.43	-0.5
3,212,217	+		EFB2_03073	0.43	-1.2
3,212,217	+		EFB2_03073	0.43	-1.7
3,212,217	+		EFB2_03073	0.43	+1.0
3,212,217	+		EFB2_03073	0.43	+0.1
3,212,218	-		EFB2_03073	0.44	-2.5
3,212,218	-		EFB2_03073	0.44	+1.0
3,212,218	-		EFB2_03073	0.44	+1.1
3,212,218	-		EFB2_03073	0.44	-3.5
3,212,218	-		EFB2_03073	0.44	-0.9
3,212,223	+		EFB2_03073	0.45	-1.7
3,212,223	+		EFB2_03073	0.45	+0.2
3,212,223	+		EFB2_03073	0.45	+0.8
3,212,224	-		EFB2_03073	0.45	-1.7
3,212,224	-		EFB2_03073	0.45	-1.9
3,212,224	-		EFB2_03073	0.45	+0.4
3,212,441	-		EFB2_03073	0.89	-1.9
3,212,467	+				-0.5
3,212,494	+				+0.4
3,212,549	-				+2.3
3,212,561	+				-3.4
3,212,562	-				+5.1
3,212,562	-				+1.4
3,212,562	-				-0.4
3,212,617	+				+0.5
3,212,617	+				-1.6
3,212,618	-				-0.4
3,212,662	+		EFB2_03074	0.11	-3.0
3,212,662	+		EFB2_03074	0.11	+0.7
3,212,663	-		EFB2_03074	0.11	-0.9
3,212,663	-		EFB2_03074	0.11	-1.2
3,212,704	+		EFB2_03074	0.14	+0.7
3,212,705	-		EFB2_03074	0.14	-1.4
3,212,738	+		EFB2_03074	0.17	-0.3
3,212,738	+		EFB2_03074	0.17	-0.9
3,212,739	-		EFB2_03074	0.17	+1.6
3,212,741	+		EFB2_03074	0.17	+1.1
3,212,741	+		EFB2_03074	0.17	+3.5
3,212,763	+		EFB2_03074	0.19	-1.6
3,212,763	+		EFB2_03074	0.19	-0.1
3,212,763	+		EFB2_03074	0.19	+1.8
3,212,763	+		EFB2_03074	0.19	+1.2
3,212,764	-		EFB2_03074	0.19	+0.6
3,212,764	-		EFB2_03074	0.19	-1.3
3,212,764	-		EFB2_03074	0.19	-0.4
3,212,816	+		EFB2_03074	0.22	+0.3
3,212,817	-		EFB2_03074	0.23	-0.4
3,212,817	-		EFB2_03074	0.23	+0.2
3,212,841	-		EFB2_03074	0.24	+1.1
3,212,883	+		EFB2_03074	0.28	-0.8
3,212,883	+		EFB2_03074	0.28	+0.4
3,212,883	+		EFB2_03074	0.28	-1.5
3,212,883	+		EFB2_03074	0.28	-0.7
3,212,883	+		EFB2_03074	0.28	+0.2
3,212,884	-		EFB2_03074	0.28	-2.2
3,212,884	-		EFB2_03074	0.28	+1.0
3,212,884	-		EFB2_03074	0.28	+2.3
3,212,884	-		EFB2_03074	0.28	+0.3
3,212,885	+		EFB2_03074	0.28	-2.2
3,212,885	+		EFB2_03074	0.28	-2.1
3,212,885	+		EFB2_03074	0.28	+1.7
3,212,885	+		EFB2_03074	0.28	-0.1
3,212,885	+		EFB2_03074	0.28	-2.5
3,212,885	+		EFB2_03074	0.28	-0.1
3,212,886	-		EFB2_03074	0.28	+0.3
3,212,938	+		EFB2_03074	0.32	-3.0
3,212,938	+		EFB2_03074	0.32	+1.6
3,212,938	+		EFB2_03074	0.32	-1.4
3,212,938	+		EFB2_03074	0.32	-1.1
3,212,965	+		EFB2_03074	0.34	+0.9
3,212,989	+		EFB2_03074	0.36	+1.4
3,212,990	-		EFB2_03074	0.36	+0.6