Strain Fitness in Escherichia fergusonii Becca around EFB2_02683

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,839,309	+		EFB2_02682	0.64	-1.2
2,839,310	-		EFB2_02682	0.64	+1.7
2,839,310	-		EFB2_02682	0.64	+1.1
2,839,310	-		EFB2_02682	0.64	+1.3
2,839,310	-		EFB2_02682	0.64	-1.7
2,839,310	-		EFB2_02682	0.64	-0.8
2,839,310	-		EFB2_02682	0.64	+1.0
2,839,310	-		EFB2_02682	0.64	+1.6
2,839,310	-		EFB2_02682	0.64	+1.8
2,839,315	-		EFB2_02682	0.65	+1.7
2,839,315	-		EFB2_02682	0.65	-0.2
2,839,315	-		EFB2_02682	0.65	+1.3
2,839,315	-		EFB2_02682	0.65	+0.1
2,839,317	-		EFB2_02682	0.65	+1.1
2,839,317	-		EFB2_02682	0.65	-1.6
2,839,317	-		EFB2_02682	0.65	-1.4
2,839,322	+		EFB2_02682	0.65	-2.3
2,839,323	-		EFB2_02682	0.65	-0.5
2,839,323	-		EFB2_02682	0.65	+1.0
2,839,323	-		EFB2_02682	0.65	-1.8
2,839,323	-		EFB2_02682	0.65	+1.1
2,839,323	-		EFB2_02682	0.65	+1.1
2,839,339	+		EFB2_02682	0.66	-1.8
2,839,340	-		EFB2_02682	0.66	-0.2
2,839,340	-		EFB2_02682	0.66	+1.0
2,839,340	-		EFB2_02682	0.66	+0.5
2,839,352	-		EFB2_02682	0.67	+2.0
2,839,352	-		EFB2_02682	0.67	-1.0
2,839,352	-		EFB2_02682	0.67	-1.1
2,839,352	-		EFB2_02682	0.67	-0.0
2,839,352	-		EFB2_02682	0.67	-1.2
2,839,368	+		EFB2_02682	0.68	+0.9
2,839,369	-		EFB2_02682	0.68	-1.2
2,839,369	-		EFB2_02682	0.68	-0.2
2,839,369	-		EFB2_02682	0.68	-2.1
2,839,369	-		EFB2_02682	0.68	-0.0
2,839,390	-		EFB2_02682	0.69	-0.0
2,839,439	+		EFB2_02682	0.72	+0.3
2,839,448	+		EFB2_02682	0.73	+1.3
2,839,448	+		EFB2_02682	0.73	-1.9
2,839,448	+		EFB2_02682	0.73	+1.6
2,839,449	-		EFB2_02682	0.73	+2.7
2,839,449	-		EFB2_02682	0.73	+1.1
2,839,457	+		EFB2_02682	0.73	-0.2
2,839,497	+		EFB2_02682	0.76	+1.2
2,839,497	+		EFB2_02682	0.76	+2.2
2,839,497	+		EFB2_02682	0.76	+2.6
2,839,497	+		EFB2_02682	0.76	-0.7
2,839,497	+		EFB2_02682	0.76	+1.0
2,839,497	+		EFB2_02682	0.76	+0.5
2,839,497	+		EFB2_02682	0.76	-1.9
2,839,497	+		EFB2_02682	0.76	+1.1
2,839,498	-		EFB2_02682	0.76	-0.1
2,839,498	-		EFB2_02682	0.76	-0.4
2,839,498	-		EFB2_02682	0.76	+1.3
2,839,498	-		EFB2_02682	0.76	+0.2
2,839,498	-		EFB2_02682	0.76	+0.4
2,839,498	-		EFB2_02682	0.76	-0.2
2,839,498	-		EFB2_02682	0.76	-1.9
2,839,498	-		EFB2_02682	0.76	-0.1
2,839,499	+		EFB2_02682	0.76	-2.3
2,839,499	+		EFB2_02682	0.76	-0.0
2,839,499	+		EFB2_02682	0.76	+1.6
2,839,499	+		EFB2_02682	0.76	+1.7
2,839,500	-		EFB2_02682	0.76	+0.3
2,839,500	-		EFB2_02682	0.76	+0.6
2,839,500	-		EFB2_02682	0.76	+0.1
2,839,500	-		EFB2_02682	0.76	+1.2
2,839,518	+		EFB2_02682	0.77	-0.2
2,839,519	-		EFB2_02682	0.77	+1.6
2,839,519	-		EFB2_02682	0.77	-0.9
2,839,519	-		EFB2_02682	0.77	+1.3
2,839,519	-		EFB2_02682	0.77	+0.3
2,839,551	+		EFB2_02682	0.79	-0.7
2,839,584	+		EFB2_02682	0.81	+1.9
2,839,585	-		EFB2_02682	0.81	-0.6
2,839,585	-		EFB2_02682	0.81	+1.7
2,839,585	-		EFB2_02682	0.81	+1.0
2,839,585	-		EFB2_02682	0.81	+0.3
2,839,585	-		EFB2_02682	0.81	+1.8
2,839,585	-		EFB2_02682	0.81	-0.8
2,839,585	-		EFB2_02682	0.81	+0.5
2,839,587	+		EFB2_02682	0.81	-0.4
2,839,588	-		EFB2_02682	0.81	-0.9
2,839,643	-		EFB2_02682	0.84	-0.6
2,839,671	+		EFB2_02682	0.86	-1.8
2,839,671	+		EFB2_02682	0.86	+3.2
2,839,672	-		EFB2_02682	0.86	+1.1
2,839,672	-		EFB2_02682	0.86	+0.5
2,839,672	-		EFB2_02682	0.86	-0.9
2,839,672	-		EFB2_02682	0.86	-1.7
2,839,705	+		EFB2_02682	0.88	-0.0
2,839,705	+		EFB2_02682	0.88	-1.5
2,839,706	-		EFB2_02682	0.88	-0.2
2,839,706	-		EFB2_02682	0.88	-1.4
2,839,706	-		EFB2_02682	0.88	-2.2
2,839,706	-		EFB2_02682	0.88	+1.2
2,839,706	-		EFB2_02682	0.88	+1.0
2,839,706	-		EFB2_02682	0.88	+2.3
2,839,731	+		EFB2_02682	0.90	-1.1
2,839,731	+		EFB2_02682	0.90	-1.0
2,839,732	-		EFB2_02682	0.90	+0.9
2,839,732	-		EFB2_02682	0.90	-2.0
2,839,732	-		EFB2_02682	0.90	+1.7
2,839,732	-		EFB2_02682	0.90	+1.6
2,839,732	-		EFB2_02682	0.90	-0.4
2,839,732	-		EFB2_02682	0.90	+2.4
2,839,732	-		EFB2_02682	0.90	+1.3
2,839,735	+		EFB2_02682	0.90	+1.6
2,839,735	+		EFB2_02682	0.90	-0.6
2,839,735	+		EFB2_02682	0.90	-1.0
2,839,736	-		EFB2_02682	0.90	-0.9
2,839,736	-		EFB2_02682	0.90	-0.9
2,839,736	-		EFB2_02682	0.90	+1.5
2,839,774	+				+0.3
2,839,775	-				-2.0
2,839,806	+				-1.2
2,839,807	-				-1.4
2,839,807	-				-0.0
2,839,832	-				-0.4
2,839,832	-				+1.7
2,839,832	-				+1.5
2,839,832	-				-0.9
2,839,881	+				-0.5
2,839,881	+				-1.9
2,839,881	+				-0.0
2,839,881	+				+1.1
2,839,882	-				-1.4
2,839,882	-				+1.0
2,839,882	-				+1.1
2,839,882	-				+0.2
2,839,883	+				+0.1
2,839,883	+				-0.9
2,839,883	+				-1.1
2,839,883	+				-0.0
2,839,883	+				+2.6
2,839,884	-				-2.5
2,839,884	-				+0.9
2,839,884	-				+3.4
2,839,884	-				+0.3
2,839,884	-				-0.6
2,839,884	-				+1.3
2,839,884	-				-1.7
2,839,884	-				-0.2
2,839,884	-				+0.4
2,839,884	-				+1.2
2,839,884	-				+0.6
2,839,884	-				-0.0
2,839,884	-				-1.2
2,839,884	-				+1.5
2,839,884	-				+0.1
2,839,884	-				-1.6
2,839,887	+				-1.7
2,839,887	+				-1.0
2,839,888	-				-0.1
2,839,888	-				-2.1
2,839,888	-				+1.0
2,839,888	-				-0.0
2,839,888	-				-0.9
2,839,888	-				-0.9
2,839,893	+				+0.7
2,839,893	+				+0.6
2,839,893	+				-1.3
2,839,893	+				-0.6
2,839,894	-				-0.4
2,839,894	-				-2.6
2,839,896	+				-1.7
2,839,897	-				-0.4
2,839,897	-				-2.8
2,839,909	+				-1.2
2,839,909	+				-1.7
2,839,909	+				-1.1
2,839,910	-				-0.4
2,839,910	-				+1.5
2,839,910	-				-0.3
2,839,910	-				+1.3
2,839,960	+				+0.6
2,839,960	+				-2.1
2,839,960	+				-1.5
2,839,960	+				+1.8
2,839,961	-				+0.3
2,839,961	-				+0.0
2,839,961	-				+0.6
2,839,961	-				-0.3
2,839,965	+				+1.1
2,839,966	-				+0.1
2,839,966	-				-1.3
2,839,971	+				+0.7
2,839,971	+				+0.3
2,839,971	+				-0.7
2,839,972	-				+0.3
2,839,972	-				+0.7
2,839,972	-				-3.2
2,839,975	+				+1.4
2,839,975	+				+0.5
2,839,975	+				-0.7
2,839,975	+				-1.7
2,839,975	+				-0.9
2,839,975	+				+2.6
2,839,975	+				-0.2
2,839,975	+				-1.3
2,839,975	+				-1.5
2,839,975	+				+0.4
2,839,975	+				+1.6
2,839,975	+				-0.7
2,839,975	+				-1.7
2,839,975	+				+0.3
2,839,976	-				-0.3
2,839,976	-				+0.8
2,839,976	-				+0.1
2,839,976	-				-1.5
2,839,976	-				+1.0
2,839,976	-				-2.3
2,839,976	-				-2.9
2,839,976	-				+1.1
2,839,976	-				-0.6
2,839,976	-				-0.4
2,839,976	-				+0.3
2,839,976	-				-1.7
2,839,976	-				+1.3
2,839,976	-				+1.2
2,839,976	-				-0.5
2,839,976	-				-1.9
2,839,976	-				+1.9
2,839,976	-				+1.2
2,839,976	-				-2.3
2,839,976	-				-0.7
2,839,976	-				-1.3
2,839,976	-				+0.1
2,839,976	-				-2.1
2,839,976	-				-0.4
2,839,976	-				+0.7
2,839,976	-				-0.7
2,839,978	+				-1.2
2,839,978	+				+2.6
2,839,978	+				-0.2
2,839,978	+				+0.3
2,839,979	-				+1.2
2,839,979	-				-1.2
2,839,979	-				+0.8
2,839,979	-				-0.1
2,839,979	-				+0.8
2,839,981	+				+2.1
2,839,982	-				+1.2
2,839,982	-				-1.1
2,839,982	-				-1.3
2,839,993	+				-0.6
2,839,994	-				-0.7
2,839,998	-				-0.1
2,839,998	-				+0.3
2,839,998	-				-0.7
2,839,998	-				-1.4
2,839,998	-				-2.2
2,839,998	-				+1.5
2,840,023	+				-1.4
2,840,023	+				+2.6
2,840,023	+				+0.6
2,840,023	+				-1.1
2,840,023	+				-1.4
2,840,023	+				+1.3
2,840,024	-				-0.7
2,840,024	-				-0.5
2,840,024	-				-1.1
2,840,024	-				+0.6
2,840,024	-				-2.3
2,840,024	-				-0.1
2,840,024	-				-1.5
2,840,024	-				+0.3
2,840,024	-				-2.1
2,840,024	-				+2.6
2,840,024	-				+0.5
2,840,024	-				-2.1
2,840,035	+				+1.9
2,840,036	-				+1.7
2,840,036	-				-1.5
2,840,036	-				-0.5
2,840,036	-				+0.4
2,840,036	-				-0.0
2,840,062	+				-1.3
2,840,062	+				+4.6
2,840,062	+				-1.7
2,840,062	+				-1.6
2,840,063	-				-0.5
2,840,063	-				+0.7
2,840,063	-				+1.5
2,840,063	-				-2.7
2,840,063	-				+0.3
2,840,083	-				-1.1
2,840,109	-				+1.5
2,840,297	+		EFB2_02683	0.11	-1.4
2,840,298	-		EFB2_02683	0.12	+1.4
2,840,340	-		EFB2_02683	0.38	-0.2
2,840,342	+		EFB2_02683	0.39	+2.6
2,840,342	+		EFB2_02683	0.39	-0.6
2,840,342	+		EFB2_02683	0.39	+1.6
2,840,343	-		EFB2_02683	0.40	-2.2
2,840,359	+		EFB2_02683	0.49	-0.6
2,840,377	+		EFB2_02683	0.60	-0.9
2,840,380	+		EFB2_02683	0.62	+2.6
2,840,380	+		EFB2_02683	0.62	-1.1
2,840,381	-		EFB2_02683	0.63	-0.3
2,840,381	-		EFB2_02683	0.63	-2.1
2,840,381	-		EFB2_02683	0.63	+2.1
2,840,381	-		EFB2_02683	0.63	+0.5
2,840,381	-		EFB2_02683	0.63	-0.4
2,840,383	+		EFB2_02683	0.64	-2.0
2,840,383	+		EFB2_02683	0.64	+0.9
2,840,384	-		EFB2_02683	0.65	-1.2
2,840,384	-		EFB2_02683	0.65	+2.0
2,840,384	-		EFB2_02683	0.65	-2.7
2,840,384	-		EFB2_02683	0.65	+1.3
2,840,384	-		EFB2_02683	0.65	-2.3
2,840,395	+		EFB2_02683	0.72	+0.6
2,840,395	+		EFB2_02683	0.72	+1.0
2,840,396	-		EFB2_02683	0.72	-2.8
2,840,396	-		EFB2_02683	0.72	-0.3
2,840,417	+				+2.2
2,840,417	+				+0.9
2,840,417	+				-1.5
2,840,417	+				+3.6
2,840,418	-				+1.2
2,840,418	-				+1.1
2,840,418	-				-0.2
2,840,418	-				+2.2
2,840,506	+		EFB2_02684	0.58	+0.7
2,840,549	+		EFB2_02684	0.85	+2.6
2,840,549	+		EFB2_02684	0.85	-1.3
2,840,549	+		EFB2_02684	0.85	-0.4
2,840,560	+				-2.6
2,840,560	+				+2.6
2,840,599	+				-1.8
2,840,599	+				+2.3
2,840,600	-				-0.8
2,840,603	+				+0.3
2,840,603	+				-0.7
2,840,603	+				+0.6
2,840,603	+				-1.5
2,840,604	-				+0.1
2,840,604	-				-1.4
2,840,604	-				+0.6
2,840,604	-				+2.1
2,840,604	-				+0.2
2,840,604	-				+2.7
2,840,630	+				-1.4
2,840,631	-				-0.8
2,840,631	-				-2.9
2,840,631	-				-0.8
2,840,636	+				+0.8
2,840,643	-				+1.2
2,840,678	+		EFB2_02685	0.12	+5.0
2,840,678	+		EFB2_02685	0.12	+2.3
2,840,678	+		EFB2_02685	0.12	-1.7
2,840,679	-		EFB2_02685	0.12	+2.9
2,840,682	-		EFB2_02685	0.13	+1.4
2,840,682	-		EFB2_02685	0.13	+1.2
2,840,682	-		EFB2_02685	0.13	+0.8
2,840,682	-		EFB2_02685	0.13	-0.2
2,840,682	-		EFB2_02685	0.13	-0.9
2,840,688	-		EFB2_02685	0.14	+0.5
2,840,760	+		EFB2_02685	0.25	-1.9
2,840,760	+		EFB2_02685	0.25	-3.1
2,840,761	-		EFB2_02685	0.25	+0.1
2,840,761	-		EFB2_02685	0.25	+1.4
2,840,761	-		EFB2_02685	0.25	-0.2
2,840,761	-		EFB2_02685	0.25	+1.4
2,840,761	-		EFB2_02685	0.25	+0.6
2,840,778	-		EFB2_02685	0.28	+0.6
2,840,800	+		EFB2_02685	0.31	-2.0
2,840,800	+		EFB2_02685	0.31	+0.8
2,840,800	+		EFB2_02685	0.31	-0.6
2,840,800	+		EFB2_02685	0.31	-1.3
2,840,800	+		EFB2_02685	0.31	+1.6
2,840,801	-		EFB2_02685	0.31	+1.4
2,840,801	-		EFB2_02685	0.31	-0.2
2,840,801	-		EFB2_02685	0.31	+2.2
2,840,801	-		EFB2_02685	0.31	+1.4
2,840,801	-		EFB2_02685	0.31	-0.9
2,840,804	+		EFB2_02685	0.32	+2.0
2,840,804	+		EFB2_02685	0.32	-0.3
2,840,804	+		EFB2_02685	0.32	-1.5
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