Strain Fitness in Escherichia fergusonii Becca around EFB2_02680

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,835,325	+				+1.6
2,835,326	-				-0.9
2,835,326	-				+0.8
2,835,349	+				+0.0
2,835,350	-				-1.9
2,835,350	-				+0.6
2,835,352	+				-2.0
2,835,353	-				+1.0
2,835,353	-				-1.7
2,835,353	-				+2.6
2,835,436	+		EFB2_02679	0.16	-1.9
2,835,437	-		EFB2_02679	0.16	+0.6
2,835,437	-		EFB2_02679	0.16	-0.1
2,835,437	-		EFB2_02679	0.16	+0.7
2,835,493	+		EFB2_02679	0.21	+2.8
2,835,494	-		EFB2_02679	0.22	-2.0
2,835,494	-		EFB2_02679	0.22	-2.3
2,835,494	-		EFB2_02679	0.22	-1.7
2,835,498	+		EFB2_02679	0.22	+0.4
2,835,499	-		EFB2_02679	0.22	-1.7
2,835,499	-		EFB2_02679	0.22	+0.4
2,835,499	-		EFB2_02679	0.22	-0.4
2,835,499	-		EFB2_02679	0.22	-1.2
2,835,499	-		EFB2_02679	0.22	-1.9
2,835,507	-		EFB2_02679	0.23	+0.4
2,835,507	-		EFB2_02679	0.23	-1.1
2,835,507	-		EFB2_02679	0.23	-0.7
2,835,507	-		EFB2_02679	0.23	-2.0
2,835,507	-		EFB2_02679	0.23	-0.9
2,835,507	-		EFB2_02679	0.23	+1.3
2,835,507	-		EFB2_02679	0.23	+1.1
2,835,507	-		EFB2_02679	0.23	+0.5
2,835,517	-		EFB2_02679	0.24	-0.6
2,835,517	-		EFB2_02679	0.24	+1.4
2,835,517	-		EFB2_02679	0.24	-0.2
2,835,517	-		EFB2_02679	0.24	-1.2
2,835,561	+		EFB2_02679	0.28	-1.4
2,835,561	+		EFB2_02679	0.28	-3.1
2,835,562	-		EFB2_02679	0.28	+1.5
2,835,562	-		EFB2_02679	0.28	+0.9
2,835,562	-		EFB2_02679	0.28	+0.3
2,835,562	-		EFB2_02679	0.28	+0.3
2,835,562	-		EFB2_02679	0.28	-2.3
2,835,562	-		EFB2_02679	0.28	+0.3
2,835,567	-		EFB2_02679	0.29	+0.5
2,835,567	-		EFB2_02679	0.29	-0.2
2,835,619	+		EFB2_02679	0.34	+0.6
2,835,620	-		EFB2_02679	0.34	-0.9
2,835,620	-		EFB2_02679	0.34	+0.4
2,835,620	-		EFB2_02679	0.34	-1.5
2,835,634	+		EFB2_02679	0.35	-1.0
2,835,635	-		EFB2_02679	0.36	+1.9
2,835,635	-		EFB2_02679	0.36	+0.1
2,835,660	-		EFB2_02679	0.38	-1.8
2,835,680	+		EFB2_02679	0.40	-0.4
2,835,681	-		EFB2_02679	0.40	-0.7
2,835,681	-		EFB2_02679	0.40	-0.4
2,835,681	-		EFB2_02679	0.40	+0.0
2,835,701	-		EFB2_02679	0.42	+2.6
2,835,701	-		EFB2_02679	0.42	+1.9
2,835,727	+		EFB2_02679	0.45	+1.6
2,835,727	+		EFB2_02679	0.45	+2.2
2,835,727	+		EFB2_02679	0.45	-1.7
2,835,728	-		EFB2_02679	0.45	-3.7
2,835,728	-		EFB2_02679	0.45	+1.0
2,835,728	-		EFB2_02679	0.45	-1.2
2,835,728	-		EFB2_02679	0.45	+0.7
2,835,728	-		EFB2_02679	0.45	+0.3
2,835,728	-		EFB2_02679	0.45	+2.1
2,835,737	+		EFB2_02679	0.46	-0.2
2,835,737	+		EFB2_02679	0.46	-1.4
2,835,737	+		EFB2_02679	0.46	-1.3
2,835,738	-		EFB2_02679	0.46	+0.7
2,835,738	-		EFB2_02679	0.46	-0.2
2,835,738	-		EFB2_02679	0.46	-0.6
2,835,738	-		EFB2_02679	0.46	+1.0
2,835,738	-		EFB2_02679	0.46	-1.4
2,835,738	-		EFB2_02679	0.46	-2.8
2,835,738	-		EFB2_02679	0.46	-0.1
2,835,738	-		EFB2_02679	0.46	+1.7
2,835,738	-		EFB2_02679	0.46	-1.4
2,835,738	-		EFB2_02679	0.46	-2.6
2,835,738	-		EFB2_02679	0.46	-1.3
2,835,738	-		EFB2_02679	0.46	-2.2
2,835,738	-		EFB2_02679	0.46	+0.2
2,835,738	-		EFB2_02679	0.46	-1.0
2,835,738	-		EFB2_02679	0.46	+0.1
2,835,738	-		EFB2_02679	0.46	-2.5
2,835,796	-		EFB2_02679	0.51	-0.1
2,835,812	-		EFB2_02679	0.53	+2.0
2,835,831	-		EFB2_02679	0.55	+0.6
2,835,880	+		EFB2_02679	0.60	-0.0
2,835,881	-		EFB2_02679	0.60	-2.3
2,835,881	-		EFB2_02679	0.60	-1.1
2,835,881	-		EFB2_02679	0.60	+1.6
2,835,881	-		EFB2_02679	0.60	-1.6
2,835,886	+		EFB2_02679	0.60	+1.4
2,835,887	-		EFB2_02679	0.60	+1.2
2,835,928	+		EFB2_02679	0.64	+1.9
2,835,928	+		EFB2_02679	0.64	+1.1
2,835,929	-		EFB2_02679	0.64	-1.3
2,835,929	-		EFB2_02679	0.64	-0.2
2,835,929	-		EFB2_02679	0.64	+3.4
2,835,929	-		EFB2_02679	0.64	-1.6
2,835,929	-		EFB2_02679	0.64	+2.6
2,835,930	+		EFB2_02679	0.65	+0.6
2,835,930	+		EFB2_02679	0.65	-0.8
2,835,930	+		EFB2_02679	0.65	-2.4
2,835,930	+		EFB2_02679	0.65	+0.9
2,835,930	+		EFB2_02679	0.65	+1.6
2,835,931	-		EFB2_02679	0.65	-1.1
2,835,931	-		EFB2_02679	0.65	-0.3
2,835,931	-		EFB2_02679	0.65	-2.3
2,835,931	-		EFB2_02679	0.65	-0.3
2,835,931	-		EFB2_02679	0.65	-0.2
2,835,931	-		EFB2_02679	0.65	-0.1
2,835,931	-		EFB2_02679	0.65	+1.6
2,835,991	+		EFB2_02679	0.71	-0.2
2,835,991	+		EFB2_02679	0.71	+1.6
2,835,992	-		EFB2_02679	0.71	+0.4
2,836,054	+		EFB2_02679	0.77	+1.0
2,836,054	+		EFB2_02679	0.77	+0.3
2,836,055	-		EFB2_02679	0.77	-0.8
2,836,055	-		EFB2_02679	0.77	-0.0
2,836,055	-		EFB2_02679	0.77	+0.9
2,836,055	-		EFB2_02679	0.77	+1.3
2,836,055	-		EFB2_02679	0.77	+1.1
2,836,055	-		EFB2_02679	0.77	+2.0
2,836,055	-		EFB2_02679	0.77	-1.3
2,836,124	+		EFB2_02679	0.84	+2.6
2,836,124	+		EFB2_02679	0.84	-0.6
2,836,124	+		EFB2_02679	0.84	-1.1
2,836,124	+		EFB2_02679	0.84	-1.0
2,836,124	+		EFB2_02679	0.84	+1.1
2,836,125	-		EFB2_02679	0.84	-1.4
2,836,125	-		EFB2_02679	0.84	-0.3
2,836,125	-		EFB2_02679	0.84	-2.1
2,836,125	-		EFB2_02679	0.84	+2.5
2,836,125	-		EFB2_02679	0.84	-1.1
2,836,125	-		EFB2_02679	0.84	-1.0
2,836,125	-		EFB2_02679	0.84	-1.2
2,836,125	-		EFB2_02679	0.84	-2.4
2,836,125	-		EFB2_02679	0.84	-0.5
2,836,125	-		EFB2_02679	0.84	-1.2
2,836,202	-				-0.4
2,836,202	-				+1.4
2,836,202	-				+0.9
2,836,202	-				-0.4
2,836,280	+				+1.4
2,836,280	+				-1.2
2,836,281	-				+2.0
2,836,281	-				-1.2
2,836,281	-				-0.2
2,836,302	-				+0.4
2,836,396	+		EFB2_02680	0.11	+0.3
2,836,396	+		EFB2_02680	0.11	-1.1
2,836,471	-		EFB2_02680	0.19	+3.4
2,836,474	+		EFB2_02680	0.19	+1.9
2,836,474	+		EFB2_02680	0.19	-1.5
2,836,474	+		EFB2_02680	0.19	+0.8
2,836,475	-		EFB2_02680	0.19	+0.3
2,836,475	-		EFB2_02680	0.19	+1.6
2,836,475	-		EFB2_02680	0.19	+3.2
2,836,475	-		EFB2_02680	0.19	+0.6
2,836,475	-		EFB2_02680	0.19	-0.9
2,836,475	-		EFB2_02680	0.19	-0.9
2,836,488	+		EFB2_02680	0.21	+1.6
2,836,489	-		EFB2_02680	0.21	+0.2
2,836,489	-		EFB2_02680	0.21	-0.5
2,836,489	-		EFB2_02680	0.21	-1.3
2,836,535	+		EFB2_02680	0.26	-0.4
2,836,535	+		EFB2_02680	0.26	-1.2
2,836,535	+		EFB2_02680	0.26	-0.7
2,836,535	+		EFB2_02680	0.26	-1.3
2,836,535	+		EFB2_02680	0.26	-0.8
2,836,535	+		EFB2_02680	0.26	+2.3
2,836,536	-		EFB2_02680	0.26	-0.7
2,836,536	-		EFB2_02680	0.26	+2.1
2,836,536	-		EFB2_02680	0.26	-0.2
2,836,536	-		EFB2_02680	0.26	-1.0
2,836,536	-		EFB2_02680	0.26	+0.3
2,836,536	-		EFB2_02680	0.26	-0.2
2,836,536	-		EFB2_02680	0.26	-1.0
2,836,536	-		EFB2_02680	0.26	-0.3
2,836,536	-		EFB2_02680	0.26	+0.5
2,836,536	-		EFB2_02680	0.26	+2.3
2,836,536	-		EFB2_02680	0.26	+2.2
2,836,555	+		EFB2_02680	0.28	+0.7
2,836,555	+		EFB2_02680	0.28	+1.0
2,836,555	+		EFB2_02680	0.28	+1.8
2,836,555	+		EFB2_02680	0.28	-1.7
2,836,556	-		EFB2_02680	0.28	-0.1
2,836,556	-		EFB2_02680	0.28	+2.8
2,836,556	-		EFB2_02680	0.28	+3.0
2,836,556	-		EFB2_02680	0.28	-1.3
2,836,556	-		EFB2_02680	0.28	-1.4
2,836,598	-		EFB2_02680	0.33	+0.1
2,836,598	-		EFB2_02680	0.33	-1.4
2,836,665	+		EFB2_02680	0.40	-0.6
2,836,665	+		EFB2_02680	0.40	-1.2
2,836,665	+		EFB2_02680	0.40	+0.9
2,836,666	-		EFB2_02680	0.40	-0.9
2,836,666	-		EFB2_02680	0.40	+1.3
2,836,666	-		EFB2_02680	0.40	-0.9
2,836,666	-		EFB2_02680	0.40	-0.1
2,836,666	-		EFB2_02680	0.40	-0.4
2,836,666	-		EFB2_02680	0.40	-3.1
2,836,666	-		EFB2_02680	0.40	-1.3
2,836,666	-		EFB2_02680	0.40	-0.4
2,836,827	-		EFB2_02680	0.58	+1.5
2,836,844	+		EFB2_02680	0.60	-1.3
2,836,844	+		EFB2_02680	0.60	-0.6
2,836,844	+		EFB2_02680	0.60	+2.3
2,836,844	+		EFB2_02680	0.60	+1.7
2,836,844	+		EFB2_02680	0.60	+1.6
2,836,844	+		EFB2_02680	0.60	-0.7
2,836,845	-		EFB2_02680	0.60	-0.2
2,836,845	-		EFB2_02680	0.60	-1.3
2,836,845	-		EFB2_02680	0.60	+1.0
2,836,902	+		EFB2_02680	0.66	-1.7
2,836,903	-		EFB2_02680	0.66	-1.1
2,836,903	-		EFB2_02680	0.66	+1.4
2,836,903	-		EFB2_02680	0.66	+0.3
2,836,903	-		EFB2_02680	0.66	-0.0
2,836,961	+		EFB2_02680	0.73	+1.7
2,837,010	+		EFB2_02680	0.78	+3.0
2,837,018	+		EFB2_02680	0.79	+2.3
2,837,051	-		EFB2_02680	0.83	-1.8
2,837,077	+		EFB2_02680	0.85	-1.1
2,837,078	-		EFB2_02680	0.86	-0.4
2,837,078	-		EFB2_02680	0.86	-1.0
2,837,078	-		EFB2_02680	0.86	+1.6
2,837,078	-		EFB2_02680	0.86	+2.6
2,837,103	+		EFB2_02680	0.88	+1.0
2,837,109	+		EFB2_02680	0.89	+2.2
2,837,109	+		EFB2_02680	0.89	+0.3
2,837,109	+		EFB2_02680	0.89	-0.2
2,837,110	-		EFB2_02680	0.89	+0.3
2,837,110	-		EFB2_02680	0.89	+0.9
2,837,110	-		EFB2_02680	0.89	+0.8
2,837,110	-		EFB2_02680	0.89	-0.0
2,837,197	-				+1.0
2,837,200	+				-0.0
2,837,200	+				-1.3
2,837,200	+				-1.2
2,837,200	+				+2.4
2,837,200	+				-1.9
2,837,200	+				+1.2
2,837,200	+				-0.0
2,837,200	+				+0.6
2,837,201	-				+0.6
2,837,201	-				+1.0
2,837,201	-				-0.4
2,837,201	-				-0.4
2,837,201	-				+0.1
2,837,201	-				+0.5
2,837,201	-				-1.0
2,837,201	-				+0.6
2,837,201	-				-1.4
2,837,201	-				-0.3
2,837,201	-				-0.4
2,837,222	-				-1.4
2,837,222	-				-0.1
2,837,255	-				+1.2
2,837,255	-				-0.7
2,837,255	-				-0.2
2,837,256	+				-0.4
2,837,256	+				+0.6
2,837,256	+				+0.6
2,837,256	+				-0.0
2,837,256	+				+0.6
2,837,256	+				+2.0
2,837,256	+				-0.7
2,837,256	+				+2.1
2,837,256	+				-0.0
2,837,256	+				-0.2
2,837,256	+				-0.0
2,837,256	+				+0.6
2,837,256	+				+3.3
2,837,256	+				+0.6
2,837,256	+				-0.6
2,837,256	+				+2.1
2,837,256	+				-0.0
2,837,256	+				+1.3
2,837,256	+				-1.9
2,837,256	+				+1.9
2,837,257	-				+0.4
2,837,257	-				-0.4
2,837,257	-				-2.1
2,837,257	-				-0.4
2,837,257	-				-1.0
2,837,257	-				+0.3
2,837,257	-				-1.2
2,837,257	-				-0.0
2,837,257	-				+0.4
2,837,257	-				-2.1
2,837,257	-				-0.2
2,837,257	-				+0.5
2,837,257	-				-1.6
2,837,257	-				-0.9
2,837,257	-				+0.6
2,837,257	-				+0.3
2,837,257	-				-0.4
2,837,257	-				+1.0
2,837,257	-				-0.8
2,837,257	-				-1.2
2,837,257	-				+0.9
2,837,257	-				-1.0
2,837,257	-				-1.1
2,837,257	-				+0.5
2,837,257	-				-1.1
2,837,257	-				+0.4
2,837,257	-				+0.1
2,837,257	-				+0.7
2,837,257	-				-0.6
2,837,257	-				-0.7
2,837,257	-				+0.5
2,837,257	-				-1.0
2,837,257	-				-0.1
2,837,257	-				-1.9
2,837,257	-				+1.4
2,837,257	-				+0.3
2,837,257	-				-0.2
2,837,257	-				+2.7
2,837,257	-				-0.6
2,837,257	-				+0.1
2,837,257	-				+2.0
2,837,257	-				-0.2
2,837,257	-				-1.4
2,837,257	-				+0.7
2,837,257	-				-0.6
2,837,276	+				-2.0
2,837,276	+				+1.4
2,837,316	+		EFB2_02681	0.10	+1.3
2,837,316	+		EFB2_02681	0.10	-1.0
2,837,316	+		EFB2_02681	0.10	+1.3
2,837,316	+		EFB2_02681	0.10	+0.1
2,837,316	+		EFB2_02681	0.10	+0.8
2,837,316	+		EFB2_02681	0.10	+0.3
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