Strain Fitness in Escherichia fergusonii Becca around EFB2_02290

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,425,544	+		EFB2_02289	0.65	+2.8
2,425,545	-		EFB2_02289	0.65	+1.0
2,425,556	+		EFB2_02289	0.65	+2.0
2,425,761	+		EFB2_02289	0.74	+0.6
2,425,761	+		EFB2_02289	0.74	-0.2
2,425,761	+		EFB2_02289	0.74	-1.0
2,425,762	-		EFB2_02289	0.74	+1.3
2,425,762	-		EFB2_02289	0.74	-1.1
2,425,788	+		EFB2_02289	0.75	-1.8
2,425,839	+		EFB2_02289	0.77	-0.1
2,425,839	+		EFB2_02289	0.77	+0.0
2,425,920	-		EFB2_02289	0.81	-0.2
2,425,920	-		EFB2_02289	0.81	+1.9
2,426,241	+				-1.3
2,426,241	+				+0.5
2,426,241	+				-0.5
2,426,241	+				+3.2
2,426,241	+				+2.3
2,426,242	-				+0.0
2,426,242	-				+2.6
2,426,242	-				-0.5
2,426,242	-				+2.8
2,426,242	-				+0.6
2,426,242	-				+1.9
2,426,242	-				-0.9
2,426,356	+				+0.2
2,426,384	+				-0.1
2,426,385	-				-1.8
2,426,388	+				-0.5
2,426,388	+				+0.5
2,426,415	+				-1.7
2,426,415	+				+0.9
2,426,416	-				+3.1
2,426,416	-				-0.2
2,426,416	-				-1.2
2,426,440	-				-0.3
2,426,440	-				+0.0
2,426,480	-				-1.5
2,426,482	+				-0.8
2,426,483	-				-2.1
2,426,544	-				+0.2
2,426,551	+				+1.2
2,426,551	+				+1.0
2,426,551	+				+1.6
2,426,552	-				-1.0
2,426,552	-				+0.5
2,426,552	-				-1.4
2,426,562	+				+1.6
2,426,566	+				+0.6
2,426,567	-				-1.3
2,426,567	-				-1.7
2,426,649	+		EFB2_02290	0.13	-1.8
2,426,649	+		EFB2_02290	0.13	-1.3
2,426,649	+		EFB2_02290	0.13	+0.7
2,426,649	+		EFB2_02290	0.13	-0.5
2,426,649	+		EFB2_02290	0.13	-1.3
2,426,650	-		EFB2_02290	0.13	+1.4
2,426,650	-		EFB2_02290	0.13	-0.8
2,426,650	-		EFB2_02290	0.13	-1.8
2,426,650	-		EFB2_02290	0.13	-0.5
2,426,650	-		EFB2_02290	0.13	-0.0
2,426,650	-		EFB2_02290	0.13	-1.3
2,426,669	+		EFB2_02290	0.14	-2.0
2,426,670	-		EFB2_02290	0.14	+3.1
2,426,670	-		EFB2_02290	0.14	+0.3
2,426,670	-		EFB2_02290	0.14	+0.5
2,426,670	-		EFB2_02290	0.14	+0.5
2,426,714	-		EFB2_02290	0.17	+2.2
2,426,714	-		EFB2_02290	0.17	-1.7
2,426,727	-		EFB2_02290	0.18	-1.4
2,426,732	-		EFB2_02290	0.18	+2.1
2,426,732	-		EFB2_02290	0.18	-1.3
2,426,732	-		EFB2_02290	0.18	-1.4
2,426,738	+		EFB2_02290	0.18	+0.6
2,426,753	-		EFB2_02290	0.19	-1.6
2,426,756	-		EFB2_02290	0.19	+1.3
2,426,776	+		EFB2_02290	0.21	+1.0
2,426,776	+		EFB2_02290	0.21	+0.6
2,426,776	+		EFB2_02290	0.21	+1.6
2,426,777	-		EFB2_02290	0.21	+0.4
2,426,777	-		EFB2_02290	0.21	+0.5
2,426,777	-		EFB2_02290	0.21	-0.2
2,426,779	+		EFB2_02290	0.21	+1.9
2,426,780	-		EFB2_02290	0.21	+0.6
2,426,780	-		EFB2_02290	0.21	-0.1
2,426,804	+		EFB2_02290	0.22	-0.3
2,426,804	+		EFB2_02290	0.22	-2.1
2,426,808	+		EFB2_02290	0.22	-1.4
2,426,808	+		EFB2_02290	0.22	-1.1
2,426,845	-		EFB2_02290	0.25	+0.1
2,426,845	-		EFB2_02290	0.25	+1.3
2,426,845	-		EFB2_02290	0.25	-1.1
2,426,847	+		EFB2_02290	0.25	-1.1
2,426,848	-		EFB2_02290	0.25	-0.7
2,426,983	+		EFB2_02290	0.33	-1.3
2,426,984	-		EFB2_02290	0.33	-0.8
2,426,984	-		EFB2_02290	0.33	-2.0
2,426,984	-		EFB2_02290	0.33	+0.5
2,426,990	+		EFB2_02290	0.34	+0.0
2,426,990	+		EFB2_02290	0.34	+0.3
2,426,991	-		EFB2_02290	0.34	+1.0
2,426,991	-		EFB2_02290	0.34	-2.0
2,426,991	-		EFB2_02290	0.34	-0.8
2,426,991	-		EFB2_02290	0.34	-1.8
2,426,991	-		EFB2_02290	0.34	+0.9
2,427,022	+		EFB2_02290	0.35	-0.2
2,427,022	+		EFB2_02290	0.35	+0.4
2,427,085	-		EFB2_02290	0.39	+2.1
2,427,092	+		EFB2_02290	0.40	+0.9
2,427,093	-		EFB2_02290	0.40	+1.5
2,427,093	-		EFB2_02290	0.40	-1.8
2,427,096	-		EFB2_02290	0.40	-0.7
2,427,148	+		EFB2_02290	0.43	-0.9
2,427,148	+		EFB2_02290	0.43	-1.4
2,427,200	+		EFB2_02290	0.46	-1.5
2,427,220	-		EFB2_02290	0.47	-2.0
2,427,220	-		EFB2_02290	0.47	+0.5
2,427,244	+		EFB2_02290	0.49	+0.9
2,427,244	+		EFB2_02290	0.49	-0.8
2,427,244	+		EFB2_02290	0.49	+0.6
2,427,244	+		EFB2_02290	0.49	+4.0
2,427,245	-		EFB2_02290	0.49	+0.9
2,427,245	-		EFB2_02290	0.49	+0.4
2,427,299	-		EFB2_02290	0.52	-0.4
2,427,299	-		EFB2_02290	0.52	+1.0
2,427,302	+		EFB2_02290	0.52	-1.1
2,427,302	+		EFB2_02290	0.52	+2.4
2,427,303	-		EFB2_02290	0.53	+0.6
2,427,341	+		EFB2_02290	0.55	+0.7
2,427,341	+		EFB2_02290	0.55	+1.1
2,427,341	+		EFB2_02290	0.55	+1.0
2,427,388	+		EFB2_02290	0.58	-2.7
2,427,389	-		EFB2_02290	0.58	+2.9
2,427,389	-		EFB2_02290	0.58	+1.0
2,427,427	-		EFB2_02290	0.60	-0.1
2,427,448	+		EFB2_02290	0.61	-0.8
2,427,448	+		EFB2_02290	0.61	+1.4
2,427,448	+		EFB2_02290	0.61	-1.5
2,427,454	+		EFB2_02290	0.62	-0.2
2,427,454	+		EFB2_02290	0.62	+1.5
2,427,454	+		EFB2_02290	0.62	-0.5
2,427,462	-		EFB2_02290	0.62	+1.5
2,427,499	+		EFB2_02290	0.64	+2.4
2,427,499	+		EFB2_02290	0.64	+0.6
2,427,499	+		EFB2_02290	0.64	-2.0
2,427,500	-		EFB2_02290	0.64	-0.5
2,427,500	-		EFB2_02290	0.64	-1.0
2,427,500	-		EFB2_02290	0.64	+0.7
2,427,503	+		EFB2_02290	0.65	+2.1
2,427,503	+		EFB2_02290	0.65	-2.2
2,427,503	+		EFB2_02290	0.65	+1.9
2,427,503	+		EFB2_02290	0.65	-1.7
2,427,503	+		EFB2_02290	0.65	-1.0
2,427,503	+		EFB2_02290	0.65	+0.0
2,427,504	-		EFB2_02290	0.65	-1.0
2,427,504	-		EFB2_02290	0.65	+0.0
2,427,504	-		EFB2_02290	0.65	-1.0
2,427,515	+		EFB2_02290	0.65	-1.3
2,427,515	+		EFB2_02290	0.65	-1.5
2,427,516	-		EFB2_02290	0.65	-0.5
2,427,556	+		EFB2_02290	0.68	+0.4
2,427,557	-		EFB2_02290	0.68	-0.5
2,427,578	+		EFB2_02290	0.69	-1.4
2,427,578	+		EFB2_02290	0.69	+1.5
2,427,578	+		EFB2_02290	0.69	+1.4
2,427,578	+		EFB2_02290	0.69	+0.5
2,427,579	-		EFB2_02290	0.69	+0.4
2,427,579	-		EFB2_02290	0.69	-0.4
2,427,579	-		EFB2_02290	0.69	-0.5
2,427,579	-		EFB2_02290	0.69	+0.5
2,427,632	+		EFB2_02290	0.72	-0.1
2,427,633	-		EFB2_02290	0.73	+1.0
2,427,633	-		EFB2_02290	0.73	-0.7
2,427,633	-		EFB2_02290	0.73	-2.0
2,427,633	-		EFB2_02290	0.73	+0.1
2,427,633	-		EFB2_02290	0.73	+1.9
2,427,633	-		EFB2_02290	0.73	+1.6
2,427,633	-		EFB2_02290	0.73	-0.2
2,427,665	+		EFB2_02290	0.74	+1.0
2,427,666	-		EFB2_02290	0.75	+0.5
2,427,672	-		EFB2_02290	0.75	+0.5
2,427,689	-		EFB2_02290	0.76	+1.2
2,427,727	+		EFB2_02290	0.78	+0.9
2,427,727	+		EFB2_02290	0.78	-0.2
2,427,727	+		EFB2_02290	0.78	+2.6
2,427,727	+		EFB2_02290	0.78	+0.6
2,427,728	-		EFB2_02290	0.78	-0.7
2,427,728	-		EFB2_02290	0.78	+2.2
2,427,728	-		EFB2_02290	0.78	+0.0
2,427,728	-		EFB2_02290	0.78	-0.7
2,427,768	-		EFB2_02290	0.81	+1.5
2,427,810	+		EFB2_02290	0.83	+0.6
2,427,810	+		EFB2_02290	0.83	-1.5
2,427,810	+		EFB2_02290	0.83	+2.0
2,427,810	+		EFB2_02290	0.83	+1.9
2,427,811	-		EFB2_02290	0.83	+2.4
2,427,811	-		EFB2_02290	0.83	+0.5
2,427,811	-		EFB2_02290	0.83	-1.8
2,427,814	+		EFB2_02290	0.84	+1.0
2,427,814	+		EFB2_02290	0.84	+1.8
2,427,814	+		EFB2_02290	0.84	+1.4
2,427,815	-		EFB2_02290	0.84	-2.2
2,427,821	-		EFB2_02290	0.84	+0.1
2,427,881	+		EFB2_02290	0.88	+1.4
2,427,882	-		EFB2_02290	0.88	-0.4
2,427,925	+				-0.5
2,427,925	+				+1.9
2,427,926	-				-2.4
2,427,926	-				+0.4
2,427,927	+				-0.8
2,427,927	+				+1.0
2,427,927	+				-1.0
2,427,927	+				-1.8
2,427,927	+				-1.6
2,427,927	+				-1.4
2,427,927	+				-0.4
2,427,927	+				+1.6
2,427,927	+				+1.4
2,427,927	+				+0.0
2,427,928	-				+0.3
2,427,928	-				+0.2
2,427,928	-				-2.1
2,427,928	-				+1.4
2,427,928	-				+0.5
2,427,928	-				+0.3
2,427,928	-				-1.7
2,427,928	-				-0.7
2,427,928	-				+0.8
2,427,928	-				+4.7
2,427,928	-				+0.5
2,427,928	-				-1.2
2,427,928	-				+1.2
2,427,928	-				-0.4
2,427,928	-				-1.4
2,427,928	-				-1.2
2,427,928	-				+1.1
2,427,928	-				-1.8
2,427,928	-				-2.0
2,427,928	-				+0.4
2,427,928	-				-1.5
2,427,928	-				+0.0
2,427,928	-				-1.1
2,427,933	+				-0.8
2,427,933	+				+2.0
2,427,933	+				+1.3
2,427,933	+				+0.3
2,427,933	+				-1.2
2,427,933	+				-1.3
2,427,933	+				-0.7
2,427,933	+				-0.2
2,427,933	+				+0.6
2,427,933	+				+0.7
2,427,933	+				-2.8
2,427,933	+				+1.8
2,427,933	+				-2.2
2,427,933	+				-0.5
2,427,934	-				-1.5
2,427,934	-				+0.8
2,427,934	-				+1.2
2,427,934	-				+0.7
2,427,934	-				-0.4
2,427,934	-				+1.5
2,427,934	-				+0.7
2,427,934	-				+1.5
2,427,934	-				-2.4
2,427,934	-				-0.8
2,427,934	-				+0.9
2,427,934	-				+0.5
2,427,934	-				+2.9
2,427,999	+				+0.1
2,428,000	-				-0.7
2,428,025	+				-1.5
2,428,041	+				-0.2
2,428,070	+				-0.1
2,428,149	-				-1.1
2,428,181	+		EFB2_02291	0.14	-0.8
2,428,182	-		EFB2_02291	0.14	+0.6
2,428,200	+		EFB2_02291	0.20	+0.7
2,428,201	-		EFB2_02291	0.20	+0.9
2,428,201	-		EFB2_02291	0.20	-1.3
2,428,201	-		EFB2_02291	0.20	+1.6
2,428,284	+		EFB2_02291	0.49	+0.4
2,428,284	+		EFB2_02291	0.49	+1.5
2,428,284	+		EFB2_02291	0.49	+0.6
2,428,285	-		EFB2_02291	0.49	+1.0
2,428,285	-		EFB2_02291	0.49	-2.6
2,428,285	-		EFB2_02291	0.49	-2.8
2,428,285	-		EFB2_02291	0.49	-1.3
2,428,285	-		EFB2_02291	0.49	+1.2
2,428,286	+		EFB2_02291	0.49	+1.1
2,428,286	+		EFB2_02291	0.49	+1.4
2,428,287	-		EFB2_02291	0.50	-1.0
2,428,287	-		EFB2_02291	0.50	+1.6
2,428,287	-		EFB2_02291	0.50	+1.5
2,428,287	-		EFB2_02291	0.50	+1.9
2,428,287	-		EFB2_02291	0.50	+0.0
2,428,287	-		EFB2_02291	0.50	-1.2
2,428,287	-		EFB2_02291	0.50	+1.4
2,428,287	-		EFB2_02291	0.50	+0.9
2,428,313	-		EFB2_02291	0.59	-0.4
2,428,313	-		EFB2_02291	0.59	-2.1
2,428,356	+		EFB2_02291	0.73	+2.1
2,428,357	-		EFB2_02291	0.73	-1.4
2,428,387	-		EFB2_02291	0.84	-0.2
2,428,419	+				+0.1
2,428,420	-				+3.0
2,428,452	-				+1.0
2,428,550	+				-1.8
2,428,550	+				+1.6
2,428,550	+				+1.0
2,428,550	+				+1.0
2,428,550	+				+0.8
2,428,550	+				-1.1
2,428,550	+				-1.0
2,428,550	+				-0.4
2,428,550	+				+0.5
2,428,550	+				+0.9
2,428,550	+				-1.5
2,428,551	-				+0.3
2,428,551	-				+0.7
2,428,551	-				+1.6
2,428,551	-				-2.2
2,428,551	-				-2.3
2,428,551	-				-0.5
2,428,551	-				-0.7
2,428,551	-				-2.2
2,428,551	-				+0.5
2,428,551	-				+2.0
2,428,649	+		EFB2_02292	0.17	-1.2
2,428,650	-		EFB2_02292	0.17	-0.7
2,428,650	-		EFB2_02292	0.17	+2.9
2,428,650	-		EFB2_02292	0.17	+0.3
2,428,678	+		EFB2_02292	0.19	-1.2
2,428,678	+		EFB2_02292	0.19	+0.6
2,428,679	-		EFB2_02292	0.19	+0.1
2,428,679	-		EFB2_02292	0.19	+0.8
2,428,679	-		EFB2_02292	0.19	+0.8
2,428,679	-		EFB2_02292	0.19	-1.5
2,428,764	+		EFB2_02292	0.26	-0.4
2,428,765	-		EFB2_02292	0.26	+0.9
2,428,883	+		EFB2_02292	0.35	+1.9
2,428,883	+		EFB2_02292	0.35	-0.7
2,428,883	+		EFB2_02292	0.35	+1.1
2,428,883	+		EFB2_02292	0.35	-2.0
2,428,884	-		EFB2_02292	0.35	+2.9
2,428,884	-		EFB2_02292	0.35	-1.1
2,428,884	-		EFB2_02292	0.35	-0.6
2,428,884	-		EFB2_02292	0.35	+0.2
2,428,895	-		EFB2_02292	0.36	-0.1
2,428,895	-		EFB2_02292	0.36	-1.8
2,428,895	-		EFB2_02292	0.36	+0.8
2,428,947	-		EFB2_02292	0.40	-1.5
2,428,992	-		EFB2_02292	0.43	-0.6
2,429,039	+		EFB2_02292	0.47	-0.6
2,429,039	+		EFB2_02292	0.47	+2.3
2,429,039	+		EFB2_02292	0.47	-0.5
2,429,040	-		EFB2_02292	0.47	-0.2
2,429,042	-		EFB2_02292	0.47	-0.7
2,429,042	-		EFB2_02292	0.47	-0.8
2,429,042	-		EFB2_02292	0.47	+0.6