Strain Fitness in Escherichia fergusonii Becca around EFB2_02097

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,248,190	+				-2.8
2,248,201	+				+2.1
2,248,201	+				+2.4
2,248,201	+				+1.1
2,248,201	+				-1.8
2,248,202	-				+0.7
2,248,202	-				-0.0
2,248,202	-				-0.9
2,248,202	-				+2.3
2,248,202	-				+1.0
2,248,202	-				-0.1
2,248,202	-				-1.4
2,248,244	+				+0.5
2,248,244	+				-1.0
2,248,244	+				-1.3
2,248,244	+				-0.4
2,248,245	-				+0.4
2,248,274	+				+2.0
2,248,279	-				-2.1
2,248,280	+				-2.4
2,248,280	+				-2.3
2,248,285	+				-1.4
2,248,300	-				+2.6
2,248,335	+				-0.9
2,248,335	+				+1.5
2,248,335	+				+1.1
2,248,335	+				+0.6
2,248,335	+				-2.4
2,248,335	+				+2.1
2,248,335	+				-1.1
2,248,335	+				+0.6
2,248,335	+				+0.9
2,248,335	+				-1.6
2,248,335	+				-2.1
2,248,335	+				+1.1
2,248,335	+				+0.8
2,248,335	+				+2.6
2,248,335	+				-0.2
2,248,335	+				-2.7
2,248,335	+				-2.1
2,248,335	+				-1.1
2,248,335	+				+0.6
2,248,335	+				-2.3
2,248,335	+				-0.7
2,248,335	+				-0.0
2,248,335	+				-0.1
2,248,335	+				-0.6
2,248,335	+				-2.9
2,248,335	+				-1.9
2,248,336	-				+0.3
2,248,336	-				-2.3
2,248,336	-				+0.6
2,248,336	-				+0.3
2,248,339	+				-0.9
2,248,339	+				-0.4
2,248,339	+				-0.6
2,248,339	+				-0.8
2,248,398	+		EFB2_02095	0.28	-1.0
2,248,398	+		EFB2_02095	0.28	-1.1
2,248,398	+		EFB2_02095	0.28	-0.7
2,248,399	-		EFB2_02095	0.28	-1.0
2,248,546	+		EFB2_02095	0.79	-1.4
2,248,633	+				+1.5
2,248,634	-				+0.3
2,248,661	+				-0.9
2,248,661	+				+1.8
2,248,661	+				-2.0
2,248,662	-				-1.5
2,248,662	-				+0.3
2,248,813	+		EFB2_02096	0.39	+1.1
2,248,824	+		EFB2_02096	0.42	+0.9
2,248,824	+		EFB2_02096	0.42	-0.7
2,248,928	+		EFB2_02096	0.71	-1.2
2,248,928	+		EFB2_02096	0.71	+0.5
2,248,928	+		EFB2_02096	0.71	+1.9
2,248,928	+		EFB2_02096	0.71	+1.9
2,248,928	+		EFB2_02096	0.71	-1.4
2,248,929	-		EFB2_02096	0.71	-0.4
2,248,929	-		EFB2_02096	0.71	+0.7
2,248,929	-		EFB2_02096	0.71	+0.6
2,248,929	-		EFB2_02096	0.71	-0.2
2,248,929	-		EFB2_02096	0.71	-0.1
2,248,929	-		EFB2_02096	0.71	+0.6
2,248,958	+		EFB2_02096	0.80	+0.3
2,248,958	+		EFB2_02096	0.80	+4.3
2,248,977	+		EFB2_02096	0.85	+1.3
2,248,978	-		EFB2_02096	0.85	-1.7
2,249,016	+				+1.9
2,249,041	+				-0.6
2,249,041	+				-0.0
2,249,089	+				+1.0
2,249,089	+				-1.3
2,249,090	-				-0.7
2,249,108	-				-0.2
2,249,108	-				-1.2
2,249,108	-				-1.2
2,249,108	-				+1.6
2,249,108	-				-1.8
2,249,178	+				-0.6
2,249,178	+				+0.1
2,249,178	+				+0.9
2,249,178	+				-0.2
2,249,179	-				+0.3
2,249,179	-				-1.7
2,249,179	-				+0.2
2,249,179	-				-1.9
2,249,188	+				+1.6
2,249,188	+				-0.2
2,249,189	-				-0.4
2,249,193	+				+0.2
2,249,193	+				+1.3
2,249,193	+				-1.9
2,249,194	-				+0.0
2,249,194	-				+0.3
2,249,207	+		EFB2_02097	0.18	+1.3
2,249,207	+		EFB2_02097	0.18	-0.9
2,249,207	+		EFB2_02097	0.18	+0.3
2,249,207	+		EFB2_02097	0.18	-0.2
2,249,207	+		EFB2_02097	0.18	-0.4
2,249,207	+		EFB2_02097	0.18	+1.8
2,249,207	+		EFB2_02097	0.18	+1.0
2,249,207	+		EFB2_02097	0.18	-0.3
2,249,207	+		EFB2_02097	0.18	-0.2
2,249,207	+		EFB2_02097	0.18	-0.7
2,249,207	+		EFB2_02097	0.18	+0.2
2,249,207	+		EFB2_02097	0.18	-0.6
2,249,207	+		EFB2_02097	0.18	-0.2
2,249,208	-		EFB2_02097	0.19	-1.7
2,249,208	-		EFB2_02097	0.19	+0.3
2,249,208	-		EFB2_02097	0.19	-0.9
2,249,208	-		EFB2_02097	0.19	-2.3
2,249,208	-		EFB2_02097	0.19	+0.6
2,249,208	-		EFB2_02097	0.19	+0.1
2,249,208	-		EFB2_02097	0.19	+1.0
2,249,208	-		EFB2_02097	0.19	-1.9
2,249,208	-		EFB2_02097	0.19	-0.2
2,249,208	-		EFB2_02097	0.19	+1.0
2,249,208	-		EFB2_02097	0.19	+0.2
2,249,208	-		EFB2_02097	0.19	-0.6
2,249,208	-		EFB2_02097	0.19	+0.9
2,249,208	-		EFB2_02097	0.19	+0.6
2,249,208	-		EFB2_02097	0.19	-1.0
2,249,208	-		EFB2_02097	0.19	-0.2
2,249,208	-		EFB2_02097	0.19	-0.8
2,249,208	-		EFB2_02097	0.19	-1.1
2,249,208	-		EFB2_02097	0.19	-0.4
2,249,208	-		EFB2_02097	0.19	+0.1
2,249,208	-		EFB2_02097	0.19	-1.2
2,249,208	-		EFB2_02097	0.19	+1.4
2,249,208	-		EFB2_02097	0.19	-1.9
2,249,208	-		EFB2_02097	0.19	+2.2
2,249,208	-		EFB2_02097	0.19	+1.6
2,249,208	-		EFB2_02097	0.19	+1.9
2,249,209	+		EFB2_02097	0.20	-0.4
2,249,209	+		EFB2_02097	0.20	-0.7
2,249,209	+		EFB2_02097	0.20	+2.2
2,249,209	+		EFB2_02097	0.20	-1.1
2,249,209	+		EFB2_02097	0.20	-1.4
2,249,209	+		EFB2_02097	0.20	-0.5
2,249,209	+		EFB2_02097	0.20	+7.0
2,249,209	+		EFB2_02097	0.20	+0.2
2,249,210	-		EFB2_02097	0.21	-1.6
2,249,210	-		EFB2_02097	0.21	+1.1
2,249,210	-		EFB2_02097	0.21	-0.7
2,249,210	-		EFB2_02097	0.21	+0.4
2,249,210	-		EFB2_02097	0.21	-0.8
2,249,210	-		EFB2_02097	0.21	+1.0
2,249,210	-		EFB2_02097	0.21	-0.4
2,249,210	-		EFB2_02097	0.21	-0.8
2,249,210	-		EFB2_02097	0.21	-0.0
2,249,210	-		EFB2_02097	0.21	+0.8
2,249,210	-		EFB2_02097	0.21	+0.7
2,249,210	-		EFB2_02097	0.21	-1.1
2,249,210	-		EFB2_02097	0.21	+1.3
2,249,211	+		EFB2_02097	0.22	-2.4
2,249,211	+		EFB2_02097	0.22	-0.9
2,249,211	+		EFB2_02097	0.22	+1.3
2,249,211	+		EFB2_02097	0.22	+3.2
2,249,211	+		EFB2_02097	0.22	-0.7
2,249,211	+		EFB2_02097	0.22	-0.9
2,249,211	+		EFB2_02097	0.22	+0.0
2,249,211	+		EFB2_02097	0.22	-0.2
2,249,211	+		EFB2_02097	0.22	+1.7
2,249,211	+		EFB2_02097	0.22	+2.7
2,249,211	+		EFB2_02097	0.22	+4.9
2,249,211	+		EFB2_02097	0.22	+2.7
2,249,211	+		EFB2_02097	0.22	+0.3
2,249,212	-		EFB2_02097	0.23	-3.9
2,249,212	-		EFB2_02097	0.23	-2.1
2,249,212	-		EFB2_02097	0.23	+1.1
2,249,212	-		EFB2_02097	0.23	+2.4
2,249,212	-		EFB2_02097	0.23	+2.1
2,249,212	-		EFB2_02097	0.23	-1.9
2,249,212	-		EFB2_02097	0.23	+0.3
2,249,212	-		EFB2_02097	0.23	-1.2
2,249,212	-		EFB2_02097	0.23	+2.3
2,249,212	-		EFB2_02097	0.23	-0.7
2,249,212	-		EFB2_02097	0.23	-2.1
2,249,212	-		EFB2_02097	0.23	-0.1
2,249,212	-		EFB2_02097	0.23	+0.0
2,249,212	-		EFB2_02097	0.23	+1.4
2,249,212	-		EFB2_02097	0.23	+1.3
2,249,212	-		EFB2_02097	0.23	+1.4
2,249,212	-		EFB2_02097	0.23	-0.2
2,249,212	-		EFB2_02097	0.23	-1.7
2,249,212	-		EFB2_02097	0.23	-1.3
2,249,225	+		EFB2_02097	0.34	+1.4
2,249,225	+		EFB2_02097	0.34	-0.6
2,249,225	+		EFB2_02097	0.34	+0.0
2,249,226	-		EFB2_02097	0.35	-0.4
2,249,226	-		EFB2_02097	0.35	+0.4
2,249,249	-		EFB2_02097	0.56	-0.4
2,249,268	+		EFB2_02097	0.73	-0.6
2,249,268	+		EFB2_02097	0.73	-0.4
2,249,269	-		EFB2_02097	0.74	+0.3
2,249,269	-		EFB2_02097	0.74	-1.6
2,249,291	+				-1.1
2,249,291	+				+0.6
2,249,291	+				+1.0
2,249,291	+				+1.2
2,249,292	-				-0.4
2,249,292	-				-0.7
2,249,292	-				+0.3
2,249,292	-				+0.3
2,249,292	-				-0.0
2,249,293	+				+0.2
2,249,293	+				+1.0
2,249,293	+				+1.1
2,249,293	+				+1.3
2,249,293	+				+1.9
2,249,293	+				+0.4
2,249,293	+				+0.5
2,249,294	-				-0.6
2,249,294	-				+0.7
2,249,294	-				+0.3
2,249,294	-				+0.6
2,249,323	+				+0.5
2,249,323	+				+1.6
2,249,323	+				+1.1
2,249,323	+				+1.8
2,249,323	+				+0.4
2,249,323	+				-2.9
2,249,323	+				+0.8
2,249,323	+				-0.3
2,249,323	+				-0.8
2,249,323	+				+1.2
2,249,323	+				-1.2
2,249,324	-				+3.6
2,249,324	-				-1.6
2,249,324	-				+0.2
2,249,324	-				-1.0
2,249,324	-				+0.0
2,249,324	-				-1.4
2,249,324	-				+0.3
2,249,332	+				+0.0
2,249,332	+				+0.4
2,249,356	+				-0.2
2,249,356	+				+0.0
2,249,356	+				-0.3
2,249,356	+				-1.9
2,249,356	+				-0.6
2,249,356	+				+0.6
2,249,356	+				-0.2
2,249,356	+				-1.2
2,249,357	-				+1.0
2,249,357	-				-0.5
2,249,357	-				-2.1
2,249,357	-				+0.3
2,249,363	-				-2.4
2,249,371	-				+0.9
2,249,410	+				-0.7
2,249,410	+				+0.7
2,249,410	+				+2.1
2,249,411	-				+0.4
2,249,411	-				-0.2
2,249,411	-				-0.9
2,249,411	-				+0.8
2,249,411	-				+2.1
2,249,411	-				+0.3
2,249,463	+		EFB2_02098	0.16	+0.8
2,249,464	-		EFB2_02098	0.16	+0.3
2,249,494	+		EFB2_02098	0.21	-1.4
2,249,494	+		EFB2_02098	0.21	+0.4
2,249,494	+		EFB2_02098	0.21	-1.2
2,249,495	-		EFB2_02098	0.21	+0.6
2,249,515	+		EFB2_02098	0.24	-1.5
2,249,523	-		EFB2_02098	0.25	-1.6
2,249,523	-		EFB2_02098	0.25	+1.1
2,249,523	-		EFB2_02098	0.25	-1.5
2,249,523	-		EFB2_02098	0.25	-0.7
2,249,581	+		EFB2_02098	0.34	+0.6
2,249,581	+		EFB2_02098	0.34	-1.2
2,249,581	+		EFB2_02098	0.34	-2.4
2,249,582	-		EFB2_02098	0.34	-0.9
2,249,585	+		EFB2_02098	0.35	+1.0
2,249,585	+		EFB2_02098	0.35	-0.9
2,249,585	+		EFB2_02098	0.35	-1.6
2,249,585	+		EFB2_02098	0.35	-0.2
2,249,585	+		EFB2_02098	0.35	-0.9
2,249,585	+		EFB2_02098	0.35	-1.4
2,249,586	-		EFB2_02098	0.35	-0.9
2,249,586	-		EFB2_02098	0.35	+0.8
2,249,586	-		EFB2_02098	0.35	+2.7
2,249,586	-		EFB2_02098	0.35	+2.3
2,249,593	+		EFB2_02098	0.36	-2.1
2,249,593	+		EFB2_02098	0.36	+0.0
2,249,593	+		EFB2_02098	0.36	-0.4
2,249,594	-		EFB2_02098	0.36	-0.2
2,249,641	+		EFB2_02098	0.43	-0.9
2,249,641	+		EFB2_02098	0.43	-2.2
2,249,642	-		EFB2_02098	0.43	+1.8
2,249,660	-		EFB2_02098	0.46	+0.9
2,249,710	+		EFB2_02098	0.53	-1.4
2,249,710	+		EFB2_02098	0.53	+0.4
2,249,710	+		EFB2_02098	0.53	-3.2
2,249,710	+		EFB2_02098	0.53	+2.1
2,249,711	-		EFB2_02098	0.54	-3.4
2,249,711	-		EFB2_02098	0.54	-0.7
2,249,781	+		EFB2_02098	0.64	+0.1
2,249,781	+		EFB2_02098	0.64	+0.8
2,249,781	+		EFB2_02098	0.64	-1.1
2,249,782	-		EFB2_02098	0.64	-1.6
2,249,782	-		EFB2_02098	0.64	+0.6
2,249,867	+		EFB2_02098	0.77	+0.1
2,249,867	+		EFB2_02098	0.77	+1.2
2,249,893	+		EFB2_02098	0.81	+2.3
2,249,894	-		EFB2_02098	0.81	-0.9
2,249,894	-		EFB2_02098	0.81	+0.6
2,249,894	-		EFB2_02098	0.81	-0.4
2,249,894	-		EFB2_02098	0.81	-0.7
2,249,905	+		EFB2_02098	0.83	-2.5
2,249,905	+		EFB2_02098	0.83	-1.2
2,249,906	-		EFB2_02098	0.83	+2.9
2,249,906	-		EFB2_02098	0.83	+0.5
2,249,919	-		EFB2_02098	0.85	-1.2
2,250,002	-				+0.9
2,250,014	+				-2.1
2,250,014	+				+0.4
2,250,014	+				-1.5
2,250,014	+				+0.7
2,250,015	-				-1.6
2,250,015	-				-0.4
2,250,015	-				+0.0
2,250,047	-				-1.5
2,250,047	-				-1.7
2,250,105	+				+1.6
2,250,106	-				-2.8
2,250,106	-				+1.4
2,250,106	-				+0.3
2,250,127	+				+0.0
2,250,127	+				+0.7
2,250,128	-				+2.6
2,250,128	-				-0.6
2,250,128	-				+0.0
2,250,141	+				+2.9
2,250,141	+				-0.7
2,250,141	+				-1.2
2,250,141	+				+0.6
2,250,141	+				-1.1
2,250,141	+				+0.8
2,250,141	+				-2.5
2,250,142	-				+0.5
2,250,193	+				-2.1
2,250,193	+				-1.3
2,250,193	+				+0.2
2,250,193	+				-1.2
2,250,193	+				-3.3
2,250,193	+				+1.1
2,250,193	+				+1.4
2,250,193	+				+0.6
2,250,193	+				+1.0
2,250,193	+				+2.4
2,250,193	+				+0.0
2,250,193	+				+0.9
2,250,193	+				+3.6
2,250,193	+				-0.4
2,250,193	+				-0.2
2,250,193	+				+1.1
2,250,194	-				+0.1
2,250,194	-				-1.9
2,250,194	-				-1.9
2,250,194	-				-2.8
2,250,194	-				+2.3
2,250,194	-				+1.1
2,250,194	-				+2.6
2,250,194	-				-2.2
2,250,194	-				-3.1
2,250,194	-				+1.4
2,250,195	+				-1.2
2,250,195	+				+0.9
2,250,195	+				+0.8
2,250,195	+				-1.7
2,250,196	-				-0.6
2,250,196	-				-2.2
2,250,196	-				-1.0
2,250,196	-				+0.3
2,250,196	-				-0.7
2,250,196	-				-1.9
2,250,221	+				+0.0
2,250,221	+				-1.0
2,250,221	+				+2.3
2,250,221	+				+2.9
2,250,221	+				+2.0
2,250,222	-				+2.7
2,250,288	-				+1.6
2,250,291	+				-0.7
2,250,291	+				+0.9
2,250,291	+				+1.0
2,250,291	+				+0.9
2,250,291	+				+2.3
2,250,291	+				-1.1
2,250,291	+				-2.5
2,250,292	-				+0.3
2,250,292	-				-2.1
2,250,292	-				-0.4
2,250,292	-				-1.1
2,250,292	-				+2.8
2,250,292	-				-2.4
2,250,292	-				-0.8
2,250,292	-				+1.6
2,250,294	+				-2.8