Strain Fitness in Escherichia fergusonii Becca around EFB2_02027

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,182,478	+				-0.6
2,182,478	+				-0.2
2,182,478	+				-2.8
2,182,479	-				+1.0
2,182,487	+				+1.6
2,182,487	+				-0.4
2,182,487	+				-0.5
2,182,487	+				+1.7
2,182,488	-				+0.2
2,182,488	-				-0.1
2,182,488	-				+1.2
2,182,488	-				+1.0
2,182,524	+				-1.9
2,182,529	-				-3.2
2,182,547	+				-0.2
2,182,548	-				-0.8
2,182,548	-				+2.7
2,182,550	+				+1.2
2,182,550	+				-1.9
2,182,550	+				+0.9
2,182,551	-				-1.4
2,182,551	-				+0.7
2,182,551	-				-2.7
2,182,551	-				-2.7
2,182,551	-				+0.8
2,182,551	-				+0.7
2,182,551	-				+2.2
2,182,551	-				-0.8
2,182,584	+				+0.2
2,182,584	+				+0.4
2,182,585	-				+0.3
2,182,596	+				+1.7
2,182,596	+				-0.7
2,182,597	-				+0.3
2,182,597	-				+0.3
2,182,651	+				+1.2
2,182,651	+				-2.8
2,182,652	-				+1.2
2,182,672	+		EFB2_02026	0.11	-0.3
2,182,734	+		EFB2_02026	0.18	+1.1
2,182,735	-		EFB2_02026	0.18	-1.7
2,182,739	+		EFB2_02026	0.19	-0.1
2,182,739	+		EFB2_02026	0.19	-0.7
2,182,739	+		EFB2_02026	0.19	-1.7
2,182,739	+		EFB2_02026	0.19	-0.4
2,182,740	-		EFB2_02026	0.19	+1.9
2,182,740	-		EFB2_02026	0.19	+0.6
2,182,740	-		EFB2_02026	0.19	-0.8
2,182,740	-		EFB2_02026	0.19	-1.7
2,182,740	-		EFB2_02026	0.19	+1.2
2,182,740	-		EFB2_02026	0.19	-1.1
2,182,740	-		EFB2_02026	0.19	+0.6
2,182,743	+		EFB2_02026	0.19	-0.7
2,182,743	+		EFB2_02026	0.19	+1.0
2,182,743	+		EFB2_02026	0.19	-1.4
2,182,743	+		EFB2_02026	0.19	+0.5
2,182,743	+		EFB2_02026	0.19	-0.1
2,182,743	+		EFB2_02026	0.19	+0.6
2,182,743	+		EFB2_02026	0.19	+1.4
2,182,743	+		EFB2_02026	0.19	+1.1
2,182,744	-		EFB2_02026	0.19	+1.1
2,182,744	-		EFB2_02026	0.19	+1.0
2,182,744	-		EFB2_02026	0.19	-0.5
2,182,744	-		EFB2_02026	0.19	-2.0
2,182,788	+		EFB2_02026	0.25	-0.2
2,182,789	-		EFB2_02026	0.25	+0.2
2,182,818	+		EFB2_02026	0.29	-0.2
2,182,818	+		EFB2_02026	0.29	+0.7
2,182,818	+		EFB2_02026	0.29	+1.2
2,182,818	+		EFB2_02026	0.29	+0.5
2,182,819	-		EFB2_02026	0.29	-0.1
2,183,044	+		EFB2_02026	0.56	-2.9
2,183,044	+		EFB2_02026	0.56	+0.9
2,183,044	+		EFB2_02026	0.56	+1.1
2,183,044	+		EFB2_02026	0.56	-2.1
2,183,067	+		EFB2_02026	0.59	-1.8
2,183,067	+		EFB2_02026	0.59	-1.5
2,183,067	+		EFB2_02026	0.59	+2.5
2,183,067	+		EFB2_02026	0.59	+0.1
2,183,067	+		EFB2_02026	0.59	-0.2
2,183,067	+		EFB2_02026	0.59	-3.5
2,183,067	+		EFB2_02026	0.59	-1.4
2,183,068	-		EFB2_02026	0.59	+2.1
2,183,068	-		EFB2_02026	0.59	-0.1
2,183,089	+		EFB2_02026	0.62	-0.1
2,183,089	+		EFB2_02026	0.62	-2.5
2,183,089	+		EFB2_02026	0.62	+1.2
2,183,089	+		EFB2_02026	0.62	-0.8
2,183,090	-		EFB2_02026	0.62	-1.2
2,183,090	-		EFB2_02026	0.62	-1.7
2,183,136	+		EFB2_02026	0.68	-3.0
2,183,136	+		EFB2_02026	0.68	-1.7
2,183,137	-		EFB2_02026	0.68	+0.9
2,183,137	-		EFB2_02026	0.68	+0.2
2,183,139	+		EFB2_02026	0.68	+2.5
2,183,140	-		EFB2_02026	0.68	+0.5
2,183,140	-		EFB2_02026	0.68	-1.6
2,183,140	-		EFB2_02026	0.68	+1.8
2,183,350	+				+2.2
2,183,350	+				-1.1
2,183,350	+				+1.1
2,183,350	+				+0.1
2,183,350	+				+0.9
2,183,350	+				-0.7
2,183,350	+				+0.9
2,183,350	+				+2.5
2,183,350	+				+0.5
2,183,351	-				+2.0
2,183,351	-				+1.8
2,183,351	-				+0.2
2,183,351	-				-0.3
2,183,351	-				-0.1
2,183,351	-				-0.3
2,183,365	-				-1.2
2,183,442	+		EFB2_02027	0.36	+2.9
2,183,442	+		EFB2_02027	0.36	+1.1
2,183,442	+		EFB2_02027	0.36	+0.2
2,183,442	+		EFB2_02027	0.36	+2.5
2,183,442	+		EFB2_02027	0.36	-0.9
2,183,442	+		EFB2_02027	0.36	+1.5
2,183,442	+		EFB2_02027	0.36	-1.7
2,183,442	+		EFB2_02027	0.36	+2.5
2,183,443	-		EFB2_02027	0.36	-2.0
2,183,443	-		EFB2_02027	0.36	+1.6
2,183,443	-		EFB2_02027	0.36	+0.9
2,183,443	-		EFB2_02027	0.36	+0.7
2,183,443	-		EFB2_02027	0.36	-0.0
2,183,477	+		EFB2_02027	0.53	+0.5
2,183,519	+		EFB2_02027	0.74	-1.5
2,183,519	+		EFB2_02027	0.74	-0.1
2,183,520	-		EFB2_02027	0.75	+2.5
2,183,520	-		EFB2_02027	0.75	+1.4
2,183,520	-		EFB2_02027	0.75	+0.5
2,183,520	-		EFB2_02027	0.75	-1.7
2,183,553	+				+0.2
2,183,554	-				+2.4
2,183,568	+				-2.4
2,183,568	+				-1.8
2,183,568	+				-0.9
2,183,568	+				+2.2
2,183,569	-				-1.7
2,183,569	-				-1.4
2,183,569	-				+0.8
2,183,596	+				+0.9
2,183,596	+				+0.3
2,183,596	+				+0.7
2,183,596	+				+1.0
2,183,597	-				+1.1
2,183,597	-				-1.3
2,183,598	+				-0.8
2,183,598	+				-0.6
2,183,598	+				+0.5
2,183,598	+				-2.4
2,183,598	+				+1.0
2,183,598	+				+3.6
2,183,598	+				+2.2
2,183,598	+				-0.1
2,183,598	+				+0.7
2,183,599	-				-1.8
2,183,599	-				-1.2
2,183,599	-				-0.8
2,183,599	-				-0.9
2,183,599	-				-0.7
2,183,599	-				-1.3
2,183,599	-				-1.9
2,183,599	-				-2.2
2,183,599	-				-0.5
2,183,599	-				-1.9
2,183,599	-				+2.9
2,183,599	-				+0.2
2,183,599	-				+0.2
2,183,645	+				-0.8
2,183,645	+				+1.1
2,183,645	+				-0.1
2,183,646	-				+0.4
2,183,647	+				+0.8
2,183,647	+				+0.9
2,183,647	+				+1.4
2,183,647	+				-1.7
2,183,647	+				-1.2
2,183,648	-				-0.9
2,183,648	-				-1.7
2,183,648	-				-3.1
2,183,685	+		EFB2_02028	0.15	-1.2
2,183,686	-		EFB2_02028	0.15	+2.0
2,183,698	+		EFB2_02028	0.17	-0.7
2,183,699	-		EFB2_02028	0.17	-0.6
2,183,756	+		EFB2_02028	0.26	-0.3
2,183,756	+		EFB2_02028	0.26	+0.7
2,183,756	+		EFB2_02028	0.26	-1.3
2,183,756	+		EFB2_02028	0.26	-1.8
2,183,756	+		EFB2_02028	0.26	+0.5
2,183,756	+		EFB2_02028	0.26	+3.2
2,183,756	+		EFB2_02028	0.26	+1.1
2,183,757	-		EFB2_02028	0.26	-0.1
2,183,757	-		EFB2_02028	0.26	-1.7
2,183,757	-		EFB2_02028	0.26	+2.5
2,183,757	-		EFB2_02028	0.26	+1.4
2,183,757	-		EFB2_02028	0.26	-1.1
2,183,757	-		EFB2_02028	0.26	+0.6
2,183,757	-		EFB2_02028	0.26	+0.6
2,183,757	-		EFB2_02028	0.26	-0.3
2,183,757	-		EFB2_02028	0.26	-1.2
2,183,757	-		EFB2_02028	0.26	-1.1
2,183,757	-		EFB2_02028	0.26	+1.9
2,183,757	-		EFB2_02028	0.26	-1.6
2,183,757	-		EFB2_02028	0.26	+0.2
2,183,758	+		EFB2_02028	0.26	+0.7
2,183,758	+		EFB2_02028	0.26	-1.4
2,183,758	+		EFB2_02028	0.26	-2.7
2,183,758	+		EFB2_02028	0.26	+0.7
2,183,758	+		EFB2_02028	0.26	+0.5
2,183,758	+		EFB2_02028	0.26	+2.3
2,183,759	-		EFB2_02028	0.26	+1.0
2,183,759	-		EFB2_02028	0.26	+0.2
2,183,764	+		EFB2_02028	0.27	+1.2
2,183,765	-		EFB2_02028	0.27	+0.5
2,183,765	-		EFB2_02028	0.27	-2.3
2,183,765	-		EFB2_02028	0.27	-1.7
2,183,800	+		EFB2_02028	0.32	+1.0
2,183,800	+		EFB2_02028	0.32	-1.2
2,183,800	+		EFB2_02028	0.32	-2.2
2,183,800	+		EFB2_02028	0.32	+1.4
2,183,801	-		EFB2_02028	0.32	+0.5
2,183,801	-		EFB2_02028	0.32	-0.4
2,183,801	-		EFB2_02028	0.32	+1.4
2,183,801	-		EFB2_02028	0.32	-2.7
2,183,807	+		EFB2_02028	0.33	-1.1
2,183,807	+		EFB2_02028	0.33	+0.2
2,183,807	+		EFB2_02028	0.33	-3.2
2,183,807	+		EFB2_02028	0.33	-0.3
2,183,807	+		EFB2_02028	0.33	-0.3
2,183,807	+		EFB2_02028	0.33	-1.3
2,183,807	+		EFB2_02028	0.33	+2.3
2,183,808	-		EFB2_02028	0.33	+0.7
2,183,808	-		EFB2_02028	0.33	-2.3
2,183,808	-		EFB2_02028	0.33	-1.1
2,183,808	-		EFB2_02028	0.33	-1.3
2,183,808	-		EFB2_02028	0.33	-1.2
2,183,808	-		EFB2_02028	0.33	-2.4
2,183,808	-		EFB2_02028	0.33	-1.4
2,183,808	-		EFB2_02028	0.33	-1.4
2,183,838	+		EFB2_02028	0.38	-0.5
2,183,838	+		EFB2_02028	0.38	-0.8
2,183,838	+		EFB2_02028	0.38	-1.4
2,183,838	+		EFB2_02028	0.38	-2.8
2,183,838	+		EFB2_02028	0.38	-2.4
2,183,838	+		EFB2_02028	0.38	+0.2
2,183,839	-		EFB2_02028	0.38	-0.7
2,183,839	-		EFB2_02028	0.38	-0.4
2,183,888	+		EFB2_02028	0.45	+0.5
2,183,888	+		EFB2_02028	0.45	-1.5
2,183,888	+		EFB2_02028	0.45	+2.5
2,183,888	+		EFB2_02028	0.45	-1.1
2,183,889	-		EFB2_02028	0.45	+0.2
2,183,889	-		EFB2_02028	0.45	+0.6
2,183,923	+		EFB2_02028	0.51	+2.5
2,183,923	+		EFB2_02028	0.51	+0.6
2,183,923	+		EFB2_02028	0.51	+2.9
2,183,924	-		EFB2_02028	0.51	+0.6
2,183,924	-		EFB2_02028	0.51	-1.4
2,183,924	-		EFB2_02028	0.51	-1.3
2,183,930	-		EFB2_02028	0.52	-0.2
2,183,980	+		EFB2_02028	0.59	-1.3
2,183,980	+		EFB2_02028	0.59	-0.8
2,183,980	+		EFB2_02028	0.59	-0.9
2,183,980	+		EFB2_02028	0.59	+2.0
2,183,981	-		EFB2_02028	0.59	+1.5
2,183,981	-		EFB2_02028	0.59	+1.9
2,183,981	-		EFB2_02028	0.59	+1.2
2,184,043	+		EFB2_02028	0.68	+1.1
2,184,054	+		EFB2_02028	0.70	+0.2
2,184,055	-		EFB2_02028	0.70	-0.5
2,184,055	-		EFB2_02028	0.70	-1.5
2,184,061	+		EFB2_02028	0.71	+1.3
2,184,061	+		EFB2_02028	0.71	+1.5
2,184,062	-		EFB2_02028	0.71	-0.8
2,184,062	-		EFB2_02028	0.71	-2.8
2,184,118	+		EFB2_02028	0.80	+2.1
2,184,118	+		EFB2_02028	0.80	-0.7
2,184,118	+		EFB2_02028	0.80	-2.5
2,184,118	+		EFB2_02028	0.80	-0.1
2,184,118	+		EFB2_02028	0.80	+1.8
2,184,118	+		EFB2_02028	0.80	+1.1
2,184,119	-		EFB2_02028	0.80	+1.9
2,184,149	+		EFB2_02028	0.84	-1.7
2,184,149	+		EFB2_02028	0.84	-0.7
2,184,149	+		EFB2_02028	0.84	+2.5
2,184,149	+		EFB2_02028	0.84	+1.1
2,184,149	+		EFB2_02028	0.84	-1.7
2,184,149	+		EFB2_02028	0.84	-0.3
2,184,149	+		EFB2_02028	0.84	+1.1
2,184,149	+		EFB2_02028	0.84	-1.3
2,184,149	+		EFB2_02028	0.84	+1.1
2,184,149	+		EFB2_02028	0.84	+1.7
2,184,149	+		EFB2_02028	0.84	+0.7
2,184,149	+		EFB2_02028	0.84	-1.6
2,184,150	-		EFB2_02028	0.84	+0.7
2,184,150	-		EFB2_02028	0.84	+0.4
2,184,150	-		EFB2_02028	0.84	-2.3
2,184,150	-		EFB2_02028	0.84	-2.6
2,184,150	-		EFB2_02028	0.84	-0.1
2,184,150	-		EFB2_02028	0.84	+0.5
2,184,150	-		EFB2_02028	0.84	-0.9
2,184,150	-		EFB2_02028	0.84	-1.7
2,184,150	-		EFB2_02028	0.84	-2.4
2,184,170	+		EFB2_02028	0.87	-0.8
2,184,171	-		EFB2_02028	0.88	-0.7
2,184,171	-		EFB2_02028	0.88	-0.4
2,184,226	+				+0.5
2,184,226	+				-3.7
2,184,226	+				+0.8
2,184,226	+				+0.1
2,184,226	+				-3.2
2,184,227	-				-1.1
2,184,267	+				+1.4
2,184,267	+				+1.2
2,184,267	+				-0.2
2,184,267	+				+1.1
2,184,268	-				+1.9
2,184,268	-				-3.6
2,184,341	+		EFB2_02029	0.12	-0.7
2,184,341	+		EFB2_02029	0.12	+0.6
2,184,341	+		EFB2_02029	0.12	+0.8
2,184,341	+		EFB2_02029	0.12	+0.6
2,184,341	+		EFB2_02029	0.12	-0.3
2,184,341	+		EFB2_02029	0.12	-2.4
2,184,341	+		EFB2_02029	0.12	+1.7
2,184,341	+		EFB2_02029	0.12	-1.1
2,184,342	-		EFB2_02029	0.12	-1.3
2,184,342	-		EFB2_02029	0.12	+0.2
2,184,342	-		EFB2_02029	0.12	+1.0
2,184,342	-		EFB2_02029	0.12	-1.9
2,184,342	-		EFB2_02029	0.12	+0.9
2,184,348	+		EFB2_02029	0.13	-0.2
2,184,348	+		EFB2_02029	0.13	+1.1
2,184,348	+		EFB2_02029	0.13	-0.0
2,184,348	+		EFB2_02029	0.13	+1.7
2,184,349	-		EFB2_02029	0.13	+0.3
2,184,349	-		EFB2_02029	0.13	-1.1
2,184,386	+		EFB2_02029	0.18	-0.9
2,184,386	+		EFB2_02029	0.18	+0.9
2,184,387	-		EFB2_02029	0.18	-1.1
2,184,387	-		EFB2_02029	0.18	+0.0
2,184,387	-		EFB2_02029	0.18	-0.1
2,184,395	+		EFB2_02029	0.19	+0.2
2,184,395	+		EFB2_02029	0.19	-3.4
2,184,395	+		EFB2_02029	0.19	-0.9
2,184,395	+		EFB2_02029	0.19	+2.3
2,184,395	+		EFB2_02029	0.19	+2.1
2,184,395	+		EFB2_02029	0.19	-0.3
2,184,395	+		EFB2_02029	0.19	-2.3
2,184,395	+		EFB2_02029	0.19	+1.4
2,184,395	+		EFB2_02029	0.19	-0.3
2,184,395	+		EFB2_02029	0.19	-0.9
2,184,395	+		EFB2_02029	0.19	-0.5
2,184,395	+		EFB2_02029	0.19	-0.6
2,184,396	-		EFB2_02029	0.19	+1.8
2,184,396	-		EFB2_02029	0.19	+1.0
2,184,396	-		EFB2_02029	0.19	-1.9
2,184,396	-		EFB2_02029	0.19	-0.9
2,184,396	-		EFB2_02029	0.19	+1.9
2,184,396	-		EFB2_02029	0.19	-0.3
2,184,396	-		EFB2_02029	0.19	+0.2
2,184,396	-		EFB2_02029	0.19	-1.4
2,184,396	-		EFB2_02029	0.19	-1.2
2,184,447	+		EFB2_02029	0.26	+0.9
2,184,448	-		EFB2_02029	0.26	+0.9
2,184,448	-		EFB2_02029	0.26	-1.5
2,184,453	+		EFB2_02029	0.27	-0.3
2,184,453	+		EFB2_02029	0.27	+0.2
2,184,454	-		EFB2_02029	0.27	-0.9
2,184,467	+		EFB2_02029	0.29	+0.8
2,184,467	+		EFB2_02029	0.29	+0.5
2,184,467	+		EFB2_02029	0.29	-1.7
2,184,468	-		EFB2_02029	0.29	-0.2
2,184,468	-		EFB2_02029	0.29	+1.1
2,184,468	-		EFB2_02029	0.29	+2.5
2,184,468	-		EFB2_02029	0.29	-1.2
2,184,468	-		EFB2_02029	0.29	-2.3
2,184,468	-		EFB2_02029	0.29	+1.9
2,184,468	-		EFB2_02029	0.29	+1.0
2,184,468	-		EFB2_02029	0.29	-2.7
2,184,531	+		EFB2_02029	0.37	-1.2
2,184,531	+		EFB2_02029	0.37	-0.3
2,184,532	-		EFB2_02029	0.37	-1.1
2,184,549	+		EFB2_02029	0.40	+1.4
2,184,549	+		EFB2_02029	0.40	-0.8
2,184,550	-		EFB2_02029	0.40	-0.3
2,184,550	-		EFB2_02029	0.40	-0.6
2,184,550	-		EFB2_02029	0.40	-0.2
2,184,550	-		EFB2_02029	0.40	+0.5
2,184,567	+		EFB2_02029	0.42	-1.7
2,184,567	+		EFB2_02029	0.42	-2.8
2,184,568	-		EFB2_02029	0.42	-1.7
2,184,568	-		EFB2_02029	0.42	-0.5