Strain Fitness in Escherichia fergusonii Becca around EFB2_00985

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,009,018	+				+0.2
1,009,019	-				-0.1
1,009,025	+				+1.3
1,009,026	-				-0.1
1,009,054	+				+0.9
1,009,055	-				+1.6
1,009,095	+				+0.2
1,009,095	+				-1.2
1,009,096	-				-0.5
1,009,096	-				+1.4
1,009,096	-				-0.5
1,009,096	-				+0.9
1,009,109	+				-0.2
1,009,128	-				-0.7
1,009,151	+				-0.3
1,009,152	-				-1.0
1,009,199	+		EFB2_00984	0.12	+0.8
1,009,199	+		EFB2_00984	0.12	-3.8
1,009,199	+		EFB2_00984	0.12	-1.9
1,009,200	-		EFB2_00984	0.12	+0.1
1,009,200	-		EFB2_00984	0.12	-3.1
1,009,200	-		EFB2_00984	0.12	-2.6
1,009,200	-		EFB2_00984	0.12	-0.9
1,009,266	-		EFB2_00984	0.21	+0.1
1,009,266	-		EFB2_00984	0.21	+0.4
1,009,289	+		EFB2_00984	0.24	+1.2
1,009,289	+		EFB2_00984	0.24	+2.7
1,009,326	+		EFB2_00984	0.29	-1.7
1,009,326	+		EFB2_00984	0.29	-4.2
1,009,326	+		EFB2_00984	0.29	-3.9
1,009,326	+		EFB2_00984	0.29	+2.3
1,009,326	+		EFB2_00984	0.29	+0.1
1,009,326	+		EFB2_00984	0.29	+1.1
1,009,326	+		EFB2_00984	0.29	-0.3
1,009,326	+		EFB2_00984	0.29	+1.6
1,009,327	-		EFB2_00984	0.29	-2.8
1,009,327	-		EFB2_00984	0.29	-1.5
1,009,327	-		EFB2_00984	0.29	-0.4
1,009,327	-		EFB2_00984	0.29	+0.5
1,009,327	-		EFB2_00984	0.29	+1.2
1,009,327	-		EFB2_00984	0.29	-2.3
1,009,367	+		EFB2_00984	0.34	+0.7
1,009,384	+		EFB2_00984	0.37	+0.4
1,009,384	+		EFB2_00984	0.37	+1.8
1,009,384	+		EFB2_00984	0.37	-0.3
1,009,384	+		EFB2_00984	0.37	-0.1
1,009,385	-		EFB2_00984	0.37	+1.2
1,009,385	-		EFB2_00984	0.37	+0.7
1,009,385	-		EFB2_00984	0.37	-1.0
1,009,385	-		EFB2_00984	0.37	+0.4
1,009,385	-		EFB2_00984	0.37	+0.9
1,009,401	+		EFB2_00984	0.39	+1.4
1,009,401	+		EFB2_00984	0.39	+0.8
1,009,401	+		EFB2_00984	0.39	+1.1
1,009,402	-		EFB2_00984	0.39	-0.3
1,009,402	-		EFB2_00984	0.39	-1.0
1,009,402	-		EFB2_00984	0.39	+1.5
1,009,402	-		EFB2_00984	0.39	+0.0
1,009,402	-		EFB2_00984	0.39	-1.7
1,009,402	-		EFB2_00984	0.39	+1.9
1,009,402	-		EFB2_00984	0.39	-1.8
1,009,407	+		EFB2_00984	0.40	-1.0
1,009,407	+		EFB2_00984	0.40	+0.4
1,009,408	-		EFB2_00984	0.40	+1.2
1,009,418	+		EFB2_00984	0.41	-1.7
1,009,418	+		EFB2_00984	0.41	-3.5
1,009,418	+		EFB2_00984	0.41	-1.8
1,009,418	+		EFB2_00984	0.41	+1.1
1,009,418	+		EFB2_00984	0.41	-1.7
1,009,418	+		EFB2_00984	0.41	+0.8
1,009,418	+		EFB2_00984	0.41	+1.3
1,009,418	+		EFB2_00984	0.41	+0.4
1,009,419	-		EFB2_00984	0.41	-1.0
1,009,419	-		EFB2_00984	0.41	-0.7
1,009,419	-		EFB2_00984	0.41	+0.1
1,009,419	-		EFB2_00984	0.41	-3.2
1,009,419	-		EFB2_00984	0.41	+1.1
1,009,419	-		EFB2_00984	0.41	+1.3
1,009,419	-		EFB2_00984	0.41	-2.7
1,009,424	+		EFB2_00984	0.42	-2.2
1,009,477	+		EFB2_00984	0.49	-0.1
1,009,478	-		EFB2_00984	0.49	+1.0
1,009,478	-		EFB2_00984	0.49	+0.5
1,009,510	+		EFB2_00984	0.54	-0.7
1,009,511	-		EFB2_00984	0.54	+0.3
1,009,569	+		EFB2_00984	0.62	+0.5
1,009,569	+		EFB2_00984	0.62	+1.2
1,009,569	+		EFB2_00984	0.62	-1.8
1,009,570	-		EFB2_00984	0.62	+1.1
1,009,570	-		EFB2_00984	0.62	+1.0
1,009,570	-		EFB2_00984	0.62	-0.2
1,009,570	-		EFB2_00984	0.62	-0.5
1,009,570	-		EFB2_00984	0.62	-0.4
1,009,570	-		EFB2_00984	0.62	-0.2
1,009,570	-		EFB2_00984	0.62	-2.8
1,009,570	-		EFB2_00984	0.62	-0.7
1,009,571	+		EFB2_00984	0.62	+0.2
1,009,572	-		EFB2_00984	0.62	-2.1
1,009,572	-		EFB2_00984	0.62	+1.7
1,009,572	-		EFB2_00984	0.62	-2.8
1,009,572	-		EFB2_00984	0.62	-0.8
1,009,587	-		EFB2_00984	0.64	+0.0
1,009,660	+		EFB2_00984	0.74	+0.3
1,009,660	+		EFB2_00984	0.74	-1.3
1,009,660	+		EFB2_00984	0.74	+1.0
1,009,660	+		EFB2_00984	0.74	-0.6
1,009,660	+		EFB2_00984	0.74	-0.5
1,009,661	-		EFB2_00984	0.74	-0.1
1,009,661	-		EFB2_00984	0.74	+0.8
1,009,661	-		EFB2_00984	0.74	+0.5
1,009,661	-		EFB2_00984	0.74	-2.5
1,009,661	-		EFB2_00984	0.74	+1.6
1,009,661	-		EFB2_00984	0.74	+0.1
1,009,662	+		EFB2_00984	0.74	-1.7
1,009,662	+		EFB2_00984	0.74	+1.0
1,009,662	+		EFB2_00984	0.74	-0.1
1,009,662	+		EFB2_00984	0.74	+0.8
1,009,662	+		EFB2_00984	0.74	+1.8
1,009,662	+		EFB2_00984	0.74	+0.8
1,009,662	+		EFB2_00984	0.74	+0.8
1,009,662	+		EFB2_00984	0.74	-1.6
1,009,662	+		EFB2_00984	0.74	-3.2
1,009,662	+		EFB2_00984	0.74	-0.1
1,009,662	+		EFB2_00984	0.74	-1.3
1,009,662	+		EFB2_00984	0.74	+0.0
1,009,663	-		EFB2_00984	0.74	+1.0
1,009,663	-		EFB2_00984	0.74	-2.4
1,009,663	-		EFB2_00984	0.74	+0.8
1,009,663	-		EFB2_00984	0.74	-3.4
1,009,663	-		EFB2_00984	0.74	+0.3
1,009,663	-		EFB2_00984	0.74	-0.8
1,009,663	-		EFB2_00984	0.74	-0.5
1,009,663	-		EFB2_00984	0.74	+0.0
1,009,663	-		EFB2_00984	0.74	+1.6
1,009,664	+		EFB2_00984	0.74	-1.5
1,009,664	+		EFB2_00984	0.74	+1.4
1,009,664	+		EFB2_00984	0.74	-1.8
1,009,664	+		EFB2_00984	0.74	+1.7
1,009,664	+		EFB2_00984	0.74	-0.7
1,009,664	+		EFB2_00984	0.74	-0.3
1,009,664	+		EFB2_00984	0.74	+0.6
1,009,664	+		EFB2_00984	0.74	-0.7
1,009,664	+		EFB2_00984	0.74	-2.2
1,009,664	+		EFB2_00984	0.74	+1.0
1,009,664	+		EFB2_00984	0.74	-1.2
1,009,664	+		EFB2_00984	0.74	+0.5
1,009,664	+		EFB2_00984	0.74	-0.5
1,009,664	+		EFB2_00984	0.74	-0.9
1,009,664	+		EFB2_00984	0.74	+0.2
1,009,664	+		EFB2_00984	0.74	+1.2
1,009,664	+		EFB2_00984	0.74	-0.3
1,009,664	+		EFB2_00984	0.74	+0.5
1,009,664	+		EFB2_00984	0.74	-0.2
1,009,665	-		EFB2_00984	0.74	+1.3
1,009,665	-		EFB2_00984	0.74	-0.8
1,009,665	-		EFB2_00984	0.74	+0.7
1,009,665	-		EFB2_00984	0.74	+1.3
1,009,665	-		EFB2_00984	0.74	+2.2
1,009,665	-		EFB2_00984	0.74	+0.6
1,009,665	-		EFB2_00984	0.74	+0.2
1,009,665	-		EFB2_00984	0.74	-0.6
1,009,665	-		EFB2_00984	0.74	-2.7
1,009,665	-		EFB2_00984	0.74	+1.5
1,009,665	-		EFB2_00984	0.74	-2.2
1,009,665	-		EFB2_00984	0.74	+0.9
1,009,665	-		EFB2_00984	0.74	-2.2
1,009,665	-		EFB2_00984	0.74	-1.4
1,009,665	-		EFB2_00984	0.74	-0.8
1,009,665	-		EFB2_00984	0.74	-0.5
1,009,665	-		EFB2_00984	0.74	+0.9
1,009,665	-		EFB2_00984	0.74	+0.1
1,009,665	-		EFB2_00984	0.74	-1.0
1,009,665	-		EFB2_00984	0.74	+0.9
1,009,665	-		EFB2_00984	0.74	+0.6
1,009,665	-		EFB2_00984	0.74	-0.1
1,009,665	-		EFB2_00984	0.74	-0.9
1,009,665	-		EFB2_00984	0.74	+0.8
1,009,674	+		EFB2_00984	0.76	-0.3
1,009,675	-		EFB2_00984	0.76	-0.9
1,009,689	+		EFB2_00984	0.78	+0.7
1,009,689	+		EFB2_00984	0.78	+0.5
1,009,689	+		EFB2_00984	0.78	+1.5
1,009,689	+		EFB2_00984	0.78	+1.0
1,009,690	-		EFB2_00984	0.78	+0.6
1,009,690	-		EFB2_00984	0.78	+0.3
1,009,690	-		EFB2_00984	0.78	+0.1
1,009,690	-		EFB2_00984	0.78	+1.2
1,009,755	+		EFB2_00984	0.87	+0.5
1,009,755	+		EFB2_00984	0.87	-0.2
1,009,755	+		EFB2_00984	0.87	+1.4
1,009,755	+		EFB2_00984	0.87	-2.1
1,009,755	+		EFB2_00984	0.87	-2.4
1,009,756	-		EFB2_00984	0.87	+1.3
1,009,756	-		EFB2_00984	0.87	-0.6
1,009,756	-		EFB2_00984	0.87	+1.1
1,009,770	-		EFB2_00984	0.89	+0.7
1,009,795	+				-2.6
1,009,795	+				-1.2
1,009,795	+				+1.2
1,009,795	+				+0.0
1,009,795	+				+0.4
1,009,795	+				-3.2
1,009,795	+				+1.1
1,009,795	+				+1.5
1,009,795	+				-4.6
1,009,795	+				+0.7
1,009,795	+				+0.3
1,009,795	+				-1.2
1,009,796	-				+1.1
1,009,796	-				-0.1
1,009,796	-				+0.4
1,009,796	-				-1.4
1,009,796	-				+0.0
1,009,796	-				-0.9
1,009,796	-				+1.1
1,009,807	+				-2.7
1,009,808	-				+1.0
1,009,808	-				+0.8
1,009,808	-				+2.8
1,009,851	+				-0.2
1,009,851	+				+0.6
1,009,851	+				+0.7
1,009,851	+				-1.2
1,009,851	+				+0.5
1,009,851	+				+1.5
1,009,851	+				-0.2
1,009,851	+				-1.2
1,009,852	-				+0.3
1,009,852	-				+1.8
1,009,852	-				-2.1
1,009,852	-				+1.0
1,009,852	-				+0.2
1,009,852	-				+1.6
1,009,852	-				+0.1
1,009,852	-				+0.4
1,009,852	-				+2.1
1,009,852	-				-0.8
1,009,854	+				+1.8
1,009,854	+				-0.6
1,009,854	+				+0.5
1,009,854	+				+1.6
1,009,854	+				-0.3
1,009,854	+				+0.2
1,009,854	+				-1.6
1,009,854	+				-0.8
1,009,854	+				-0.0
1,009,854	+				-2.2
1,009,854	+				-2.0
1,009,854	+				-0.2
1,009,854	+				-0.3
1,009,854	+				-2.1
1,009,854	+				-1.7
1,009,854	+				-0.3
1,009,854	+				+0.4
1,009,854	+				-0.0
1,009,854	+				+1.1
1,009,854	+				-1.6
1,009,854	+				+0.5
1,009,854	+				+0.7
1,009,854	+				-1.2
1,009,854	+				+0.8
1,009,854	+				+0.5
1,009,854	+				-0.9
1,009,854	+				-0.4
1,009,854	+				+1.3
1,009,854	+				-1.1
1,009,854	+				-0.8
1,009,854	+				-2.6
1,009,854	+				+0.8
1,009,854	+				+1.8
1,009,854	+				-2.4
1,009,854	+				+0.6
1,009,854	+				-0.8
1,009,854	+				-0.2
1,009,854	+				+0.3
1,009,855	-				-0.1
1,009,855	-				+0.8
1,009,855	-				-1.1
1,009,855	-				+0.3
1,009,855	-				-0.2
1,009,855	-				-1.6
1,009,855	-				-2.2
1,009,855	-				-0.5
1,009,855	-				-1.1
1,009,855	-				-2.2
1,009,855	-				-0.1
1,009,855	-				+0.7
1,009,855	-				+0.0
1,009,855	-				+0.4
1,009,855	-				-0.7
1,009,855	-				+0.6
1,009,855	-				-0.1
1,009,855	-				+0.6
1,009,855	-				-3.2
1,009,855	-				-0.6
1,009,855	-				+0.7
1,009,855	-				+1.3
1,009,855	-				-2.2
1,009,855	-				+2.5
1,009,855	-				+1.8
1,009,855	-				-2.1
1,009,860	+				+1.3
1,009,861	-				-0.1
1,009,861	-				-0.7
1,009,861	-				-1.2
1,009,870	+				+0.0
1,009,870	+				+0.7
1,009,871	-				+2.3
1,009,871	-				-0.1
1,009,871	-				-0.1
1,009,871	-				-1.1
1,009,883	-				-1.1
1,009,898	+				-1.9
1,009,929	+				-1.3
1,009,929	+				+0.1
1,009,929	+				-1.3
1,009,929	+				-0.9
1,009,929	+				+0.2
1,009,929	+				+0.5
1,009,929	+				+0.9
1,009,929	+				+0.6
1,009,929	+				+1.1
1,009,929	+				+1.1
1,009,929	+				+0.3
1,009,929	+				-0.0
1,009,929	+				-1.5
1,009,929	+				+0.0
1,009,929	+				-0.5
1,009,929	+				+1.2
1,009,929	+				-3.2
1,009,929	+				+0.2
1,009,929	+				+1.1
1,009,929	+				-0.2
1,009,929	+				+0.9
1,009,929	+				+0.2
1,009,930	-				-2.6
1,009,930	-				+1.9
1,009,930	-				-2.7
1,009,930	-				-0.3
1,009,930	-				-0.4
1,009,930	-				-3.0
1,009,930	-				-0.9
1,009,930	-				-0.2
1,009,930	-				-0.1
1,009,930	-				-1.0
1,009,930	-				-0.3
1,009,930	-				+0.1
1,009,930	-				-1.2
1,009,930	-				-0.0
1,009,930	-				-0.7
1,009,930	-				-0.7
1,009,930	-				-2.9
1,009,930	-				-1.3
1,009,930	-				+0.0
1,009,930	-				-3.2
1,009,930	-				-0.4
1,009,930	-				-1.1
1,009,930	-				-1.5
1,009,930	-				-3.0
1,009,930	-				+1.5
1,009,930	-				-2.1
1,009,930	-				+0.1
1,009,930	-				-1.2
1,009,930	-				-0.1
1,009,937	+				+0.3
1,009,937	+				-1.0
1,009,937	+				-0.3
1,009,937	+				-2.2
1,009,938	-				-3.8
1,009,938	-				-2.7
1,009,938	-				-0.2
1,009,938	-				-0.5
1,009,938	-				-0.8
1,009,938	-				-1.0
1,009,964	+				+1.2
1,009,965	-				+0.2
1,009,965	-				-1.3
1,009,965	-				+0.8
1,010,023	-				-4.0
1,010,051	+				-1.2
1,010,051	+				-0.5
1,010,052	-				+2.8
1,010,070	+				-1.4
1,010,070	+				-1.2
1,010,071	-				+1.1
1,010,097	+				+0.1
1,010,152	+		EFB2_00985	0.16	+0.3
1,010,153	-		EFB2_00985	0.16	-2.9
1,010,154	+		EFB2_00985	0.16	+3.1
1,010,154	+		EFB2_00985	0.16	+0.9
1,010,154	+		EFB2_00985	0.16	+0.6
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