Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04582 and BACOVA_04583 are separated by 76 nucleotides BACOVA_04583 and BACOVA_04584 are separated by 172 nucleotides
BACOVA_04582: BACOVA_04582 - iron-only hydrogenase maturation rSAM protein HydG, at 527,017 to 528,438
_04582
BACOVA_04583: BACOVA_04583 - hydrogenase maturation GTPase HydF, at 528,515 to 529,705
_04583
BACOVA_04584: BACOVA_04584 - hypothetical protein, at 529,878 to 531,149
_04584
Position (kb) 528
529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 527.526 kb on + strand, within BACOVA_04582 at 527.527 kb on - strand, within BACOVA_04582 at 527.543 kb on + strand, within BACOVA_04582 at 527.544 kb on - strand, within BACOVA_04582 at 527.557 kb on - strand, within BACOVA_04582 at 527.557 kb on - strand, within BACOVA_04582 at 527.560 kb on - strand, within BACOVA_04582 at 527.564 kb on + strand, within BACOVA_04582 at 527.595 kb on + strand, within BACOVA_04582 at 527.596 kb on - strand, within BACOVA_04582 at 527.602 kb on - strand, within BACOVA_04582 at 527.605 kb on + strand, within BACOVA_04582 at 527.606 kb on - strand, within BACOVA_04582 at 527.606 kb on - strand, within BACOVA_04582 at 527.607 kb on + strand, within BACOVA_04582 at 527.608 kb on - strand, within BACOVA_04582 at 527.608 kb on - strand, within BACOVA_04582 at 527.613 kb on - strand, within BACOVA_04582 at 527.613 kb on - strand, within BACOVA_04582 at 527.627 kb on - strand, within BACOVA_04582 at 527.641 kb on + strand, within BACOVA_04582 at 527.677 kb on + strand, within BACOVA_04582 at 527.677 kb on + strand, within BACOVA_04582 at 527.678 kb on - strand, within BACOVA_04582 at 527.684 kb on - strand, within BACOVA_04582 at 527.732 kb on + strand, within BACOVA_04582 at 527.732 kb on + strand, within BACOVA_04582 at 527.732 kb on + strand, within BACOVA_04582 at 527.733 kb on - strand, within BACOVA_04582 at 527.737 kb on - strand, within BACOVA_04582 at 527.771 kb on - strand, within BACOVA_04582 at 527.789 kb on + strand, within BACOVA_04582 at 527.790 kb on - strand, within BACOVA_04582 at 527.874 kb on + strand, within BACOVA_04582 at 527.874 kb on + strand, within BACOVA_04582 at 527.875 kb on - strand, within BACOVA_04582 at 527.875 kb on - strand, within BACOVA_04582 at 527.919 kb on + strand, within BACOVA_04582 at 527.928 kb on - strand, within BACOVA_04582 at 527.928 kb on - strand, within BACOVA_04582 at 527.953 kb on + strand, within BACOVA_04582 at 527.955 kb on + strand, within BACOVA_04582 at 528.005 kb on + strand, within BACOVA_04582 at 528.018 kb on + strand, within BACOVA_04582 at 528.019 kb on - strand, within BACOVA_04582 at 528.078 kb on - strand, within BACOVA_04582 at 528.087 kb on + strand, within BACOVA_04582 at 528.161 kb on - strand, within BACOVA_04582 at 528.161 kb on - strand, within BACOVA_04582 at 528.163 kb on - strand, within BACOVA_04582 at 528.163 kb on - strand, within BACOVA_04582 at 528.163 kb on - strand, within BACOVA_04582 at 528.178 kb on - strand, within BACOVA_04582 at 528.286 kb on + strand, within BACOVA_04582 at 528.287 kb on - strand, within BACOVA_04582 at 528.383 kb on + strand at 528.383 kb on + strand at 528.384 kb on - strand at 528.456 kb on + strand at 528.457 kb on - strand at 528.457 kb on - strand at 528.459 kb on + strand at 528.460 kb on - strand at 528.460 kb on - strand at 528.483 kb on - strand at 528.491 kb on + strand at 528.503 kb on - strand at 528.514 kb on + strand at 528.515 kb on - strand at 528.529 kb on + strand at 528.530 kb on - strand at 528.553 kb on + strand at 528.553 kb on + strand at 528.553 kb on + strand at 528.554 kb on - strand at 528.583 kb on + strand at 528.584 kb on - strand at 528.596 kb on - strand at 528.637 kb on + strand, within BACOVA_04583 at 528.673 kb on + strand, within BACOVA_04583 at 528.674 kb on - strand, within BACOVA_04583 at 528.674 kb on - strand, within BACOVA_04583 at 528.689 kb on - strand, within BACOVA_04583 at 528.708 kb on + strand, within BACOVA_04583 at 528.709 kb on - strand, within BACOVA_04583 at 528.709 kb on - strand, within BACOVA_04583 at 528.713 kb on - strand, within BACOVA_04583 at 528.713 kb on - strand, within BACOVA_04583 at 528.769 kb on - strand, within BACOVA_04583 at 528.814 kb on + strand, within BACOVA_04583 at 528.814 kb on + strand, within BACOVA_04583 at 528.818 kb on - strand, within BACOVA_04583 at 528.894 kb on + strand, within BACOVA_04583 at 528.899 kb on - strand, within BACOVA_04583 at 528.900 kb on + strand, within BACOVA_04583 at 528.901 kb on - strand, within BACOVA_04583 at 528.901 kb on - strand, within BACOVA_04583 at 528.901 kb on - strand, within BACOVA_04583 at 528.916 kb on + strand, within BACOVA_04583 at 528.916 kb on + strand, within BACOVA_04583 at 528.916 kb on + strand, within BACOVA_04583 at 528.916 kb on + strand, within BACOVA_04583 at 528.929 kb on + strand, within BACOVA_04583 at 528.929 kb on + strand, within BACOVA_04583 at 528.930 kb on - strand, within BACOVA_04583 at 528.930 kb on - strand, within BACOVA_04583 at 528.944 kb on + strand, within BACOVA_04583 at 528.946 kb on + strand, within BACOVA_04583 at 528.951 kb on + strand, within BACOVA_04583 at 528.960 kb on + strand, within BACOVA_04583 at 528.961 kb on - strand, within BACOVA_04583 at 528.965 kb on - strand, within BACOVA_04583 at 529.083 kb on + strand, within BACOVA_04583 at 529.106 kb on - strand, within BACOVA_04583 at 529.134 kb on + strand, within BACOVA_04583 at 529.192 kb on + strand, within BACOVA_04583 at 529.193 kb on - strand, within BACOVA_04583 at 529.193 kb on - strand, within BACOVA_04583 at 529.195 kb on + strand, within BACOVA_04583 at 529.195 kb on + strand, within BACOVA_04583 at 529.280 kb on + strand, within BACOVA_04583 at 529.280 kb on + strand, within BACOVA_04583 at 529.337 kb on + strand, within BACOVA_04583 at 529.337 kb on + strand, within BACOVA_04583 at 529.338 kb on - strand, within BACOVA_04583 at 529.338 kb on - strand, within BACOVA_04583 at 529.338 kb on - strand, within BACOVA_04583 at 529.339 kb on + strand, within BACOVA_04583 at 529.340 kb on - strand, within BACOVA_04583 at 529.340 kb on - strand, within BACOVA_04583 at 529.340 kb on - strand, within BACOVA_04583 at 529.340 kb on - strand, within BACOVA_04583 at 529.359 kb on - strand, within BACOVA_04583 at 529.362 kb on + strand, within BACOVA_04583 at 529.363 kb on - strand, within BACOVA_04583 at 529.407 kb on + strand, within BACOVA_04583 at 529.408 kb on - strand, within BACOVA_04583 at 529.410 kb on + strand, within BACOVA_04583 at 529.410 kb on + strand, within BACOVA_04583 at 529.411 kb on - strand, within BACOVA_04583 at 529.426 kb on + strand, within BACOVA_04583 at 529.452 kb on + strand, within BACOVA_04583 at 529.452 kb on + strand, within BACOVA_04583 at 529.513 kb on + strand, within BACOVA_04583 at 529.582 kb on + strand, within BACOVA_04583 at 529.582 kb on + strand, within BACOVA_04583 at 529.582 kb on + strand, within BACOVA_04583 at 529.582 kb on + strand, within BACOVA_04583 at 529.583 kb on - strand, within BACOVA_04583 at 529.583 kb on - strand, within BACOVA_04583 at 529.602 kb on + strand at 529.653 kb on - strand at 529.683 kb on + strand at 529.716 kb on + strand at 529.717 kb on - strand at 529.724 kb on + strand at 529.749 kb on + strand at 529.749 kb on + strand at 529.774 kb on - strand at 529.774 kb on - strand at 529.788 kb on - strand at 529.791 kb on + strand at 529.848 kb on - strand at 529.867 kb on - strand at 529.876 kb on + strand at 529.905 kb on - strand at 529.905 kb on - strand at 529.905 kb on - strand at 529.935 kb on + strand at 529.935 kb on + strand at 529.945 kb on + strand at 530.040 kb on + strand, within BACOVA_04584 at 530.040 kb on + strand, within BACOVA_04584 at 530.066 kb on - strand, within BACOVA_04584 at 530.075 kb on - strand, within BACOVA_04584 at 530.077 kb on - strand, within BACOVA_04584 at 530.077 kb on - strand, within BACOVA_04584 at 530.105 kb on + strand, within BACOVA_04584 at 530.105 kb on - strand, within BACOVA_04584 at 530.106 kb on - strand, within BACOVA_04584 at 530.138 kb on + strand, within BACOVA_04584 at 530.138 kb on + strand, within BACOVA_04584 at 530.138 kb on + strand, within BACOVA_04584 at 530.139 kb on - strand, within BACOVA_04584 at 530.146 kb on - strand, within BACOVA_04584 at 530.146 kb on - strand, within BACOVA_04584 at 530.146 kb on - strand, within BACOVA_04584 at 530.225 kb on + strand, within BACOVA_04584 at 530.250 kb on - strand, within BACOVA_04584 at 530.291 kb on + strand, within BACOVA_04584 at 530.291 kb on + strand, within BACOVA_04584 at 530.292 kb on - strand, within BACOVA_04584 at 530.298 kb on + strand, within BACOVA_04584 at 530.298 kb on + strand, within BACOVA_04584 at 530.299 kb on - strand, within BACOVA_04584 at 530.299 kb on - strand, within BACOVA_04584 at 530.299 kb on - strand, within BACOVA_04584 at 530.388 kb on - strand, within BACOVA_04584 at 530.406 kb on - strand, within BACOVA_04584 at 530.469 kb on + strand, within BACOVA_04584 at 530.470 kb on - strand, within BACOVA_04584 at 530.470 kb on - strand, within BACOVA_04584 at 530.483 kb on + strand, within BACOVA_04584 at 530.483 kb on + strand, within BACOVA_04584 at 530.484 kb on - strand, within BACOVA_04584 at 530.547 kb on - strand, within BACOVA_04584 at 530.576 kb on + strand, within BACOVA_04584 at 530.577 kb on - strand, within BACOVA_04584 at 530.577 kb on - strand, within BACOVA_04584 at 530.578 kb on + strand, within BACOVA_04584 at 530.579 kb on - strand, within BACOVA_04584 at 530.579 kb on - strand, within BACOVA_04584 at 530.579 kb on - strand, within BACOVA_04584 at 530.592 kb on + strand, within BACOVA_04584 at 530.592 kb on + strand, within BACOVA_04584 at 530.593 kb on - strand, within BACOVA_04584 at 530.593 kb on - strand, within BACOVA_04584 at 530.595 kb on - strand, within BACOVA_04584 at 530.595 kb on - strand, within BACOVA_04584 at 530.614 kb on - strand, within BACOVA_04584 at 530.630 kb on + strand, within BACOVA_04584 at 530.630 kb on + strand, within BACOVA_04584 at 530.661 kb on - strand, within BACOVA_04584 at 530.662 kb on + strand, within BACOVA_04584 at 530.697 kb on + strand, within BACOVA_04584 at 530.697 kb on + strand, within BACOVA_04584
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 527,526 + BACOVA_04582 0.36 +0.5 527,527 - BACOVA_04582 0.36 -0.5 527,543 + BACOVA_04582 0.37 -0.5 527,544 - BACOVA_04582 0.37 -0.9 527,557 - BACOVA_04582 0.38 +0.5 527,557 - BACOVA_04582 0.38 -0.2 527,560 - BACOVA_04582 0.38 +0.5 527,564 + BACOVA_04582 0.38 +0.3 527,595 + BACOVA_04582 0.41 +1.5 527,596 - BACOVA_04582 0.41 -2.3 527,602 - BACOVA_04582 0.41 -0.3 527,605 + BACOVA_04582 0.41 -0.5 527,606 - BACOVA_04582 0.41 +1.1 527,606 - BACOVA_04582 0.41 -0.8 527,607 + BACOVA_04582 0.41 +0.2 527,608 - BACOVA_04582 0.42 +0.2 527,608 - BACOVA_04582 0.42 -0.2 527,613 - BACOVA_04582 0.42 -2.8 527,613 - BACOVA_04582 0.42 -1.9 527,627 - BACOVA_04582 0.43 -1.1 527,641 + BACOVA_04582 0.44 +0.6 527,677 + BACOVA_04582 0.46 -1.1 527,677 + BACOVA_04582 0.46 +0.1 527,678 - BACOVA_04582 0.46 -0.5 527,684 - BACOVA_04582 0.47 -0.8 527,732 + BACOVA_04582 0.50 -0.7 527,732 + BACOVA_04582 0.50 -0.0 527,732 + BACOVA_04582 0.50 -0.4 527,733 - BACOVA_04582 0.50 -1.5 527,737 - BACOVA_04582 0.51 -2.7 527,771 - BACOVA_04582 0.53 -0.1 527,789 + BACOVA_04582 0.54 -0.5 527,790 - BACOVA_04582 0.54 -0.7 527,874 + BACOVA_04582 0.60 -1.0 527,874 + BACOVA_04582 0.60 -0.1 527,875 - BACOVA_04582 0.60 -0.1 527,875 - BACOVA_04582 0.60 -1.1 527,919 + BACOVA_04582 0.63 -0.3 527,928 - BACOVA_04582 0.64 -0.3 527,928 - BACOVA_04582 0.64 +0.5 527,953 + BACOVA_04582 0.66 -0.7 527,955 + BACOVA_04582 0.66 -0.3 528,005 + BACOVA_04582 0.69 +0.2 528,018 + BACOVA_04582 0.70 +0.6 528,019 - BACOVA_04582 0.70 -0.6 528,078 - BACOVA_04582 0.75 -0.0 528,087 + BACOVA_04582 0.75 -2.4 528,161 - BACOVA_04582 0.80 -0.0 528,161 - BACOVA_04582 0.80 -0.6 528,163 - BACOVA_04582 0.81 -0.6 528,163 - BACOVA_04582 0.81 -1.0 528,163 - BACOVA_04582 0.81 -0.8 528,178 - BACOVA_04582 0.82 +0.6 528,286 + BACOVA_04582 0.89 -1.5 528,287 - BACOVA_04582 0.89 -0.3 528,383 + +0.6 528,383 + -0.3 528,384 - -0.7 528,456 + -0.4 528,457 - -1.1 528,457 - +0.2 528,459 + +0.3 528,460 - +0.4 528,460 - -1.5 528,483 - -0.5 528,491 + -0.4 528,503 - -0.4 528,514 + -1.3 528,515 - -1.5 528,529 + -1.4 528,530 - -1.2 528,553 + -1.1 528,553 + -0.1 528,553 + -0.2 528,554 - -0.8 528,583 + -0.1 528,584 - -0.5 528,596 - -2.7 528,637 + BACOVA_04583 0.10 -0.6 528,673 + BACOVA_04583 0.13 -1.0 528,674 - BACOVA_04583 0.13 -0.5 528,674 - BACOVA_04583 0.13 +0.2 528,689 - BACOVA_04583 0.15 -0.3 528,708 + BACOVA_04583 0.16 -0.1 528,709 - BACOVA_04583 0.16 -2.7 528,709 - BACOVA_04583 0.16 -0.5 528,713 - BACOVA_04583 0.17 +0.0 528,713 - BACOVA_04583 0.17 -0.4 528,769 - BACOVA_04583 0.21 -1.1 528,814 + BACOVA_04583 0.25 +0.1 528,814 + BACOVA_04583 0.25 -0.9 528,818 - BACOVA_04583 0.25 -1.5 528,894 + BACOVA_04583 0.32 -1.6 528,899 - BACOVA_04583 0.32 -1.6 528,900 + BACOVA_04583 0.32 -0.1 528,901 - BACOVA_04583 0.32 +0.2 528,901 - BACOVA_04583 0.32 -0.3 528,901 - BACOVA_04583 0.32 -0.2 528,916 + BACOVA_04583 0.34 -0.3 528,916 + BACOVA_04583 0.34 -0.3 528,916 + BACOVA_04583 0.34 -0.3 528,916 + BACOVA_04583 0.34 -1.8 528,929 + BACOVA_04583 0.35 -0.1 528,929 + BACOVA_04583 0.35 +0.9 528,930 - BACOVA_04583 0.35 +0.3 528,930 - BACOVA_04583 0.35 -0.7 528,944 + BACOVA_04583 0.36 -0.4 528,946 + BACOVA_04583 0.36 -0.7 528,951 + BACOVA_04583 0.37 +0.1 528,960 + BACOVA_04583 0.37 -0.8 528,961 - BACOVA_04583 0.37 -1.4 528,965 - BACOVA_04583 0.38 -1.0 529,083 + BACOVA_04583 0.48 +0.3 529,106 - BACOVA_04583 0.50 -1.2 529,134 + BACOVA_04583 0.52 +0.2 529,192 + BACOVA_04583 0.57 -1.0 529,193 - BACOVA_04583 0.57 -0.5 529,193 - BACOVA_04583 0.57 +0.2 529,195 + BACOVA_04583 0.57 -0.5 529,195 + BACOVA_04583 0.57 -1.6 529,280 + BACOVA_04583 0.64 +0.4 529,280 + BACOVA_04583 0.64 -0.9 529,337 + BACOVA_04583 0.69 -0.3 529,337 + BACOVA_04583 0.69 -0.4 529,338 - BACOVA_04583 0.69 -0.3 529,338 - BACOVA_04583 0.69 -0.8 529,338 - BACOVA_04583 0.69 +0.1 529,339 + BACOVA_04583 0.69 -0.8 529,340 - BACOVA_04583 0.69 -1.0 529,340 - BACOVA_04583 0.69 -0.6 529,340 - BACOVA_04583 0.69 -1.2 529,340 - BACOVA_04583 0.69 -0.9 529,359 - BACOVA_04583 0.71 -0.9 529,362 + BACOVA_04583 0.71 -1.5 529,363 - BACOVA_04583 0.71 +0.3 529,407 + BACOVA_04583 0.75 -1.6 529,408 - BACOVA_04583 0.75 +0.5 529,410 + BACOVA_04583 0.75 +0.2 529,410 + BACOVA_04583 0.75 -1.4 529,411 - BACOVA_04583 0.75 -1.0 529,426 + BACOVA_04583 0.76 -1.0 529,452 + BACOVA_04583 0.79 -0.4 529,452 + BACOVA_04583 0.79 +0.1 529,513 + BACOVA_04583 0.84 +0.1 529,582 + BACOVA_04583 0.90 -1.9 529,582 + BACOVA_04583 0.90 -1.6 529,582 + BACOVA_04583 0.90 -0.0 529,582 + BACOVA_04583 0.90 +0.1 529,583 - BACOVA_04583 0.90 +0.1 529,583 - BACOVA_04583 0.90 -1.3 529,602 + -0.9 529,653 - -0.2 529,683 + -0.3 529,716 + -1.4 529,717 - -0.2 529,724 + +1.0 529,749 + +0.3 529,749 + +2.7 529,774 - -0.2 529,774 - +0.5 529,788 - +0.0 529,791 + +0.5 529,848 - +1.7 529,867 - +0.5 529,876 + +0.3 529,905 - +0.5 529,905 - -2.6 529,905 - +0.4 529,935 + -1.0 529,935 + -1.4 529,945 + -0.7 530,040 + BACOVA_04584 0.13 +0.6 530,040 + BACOVA_04584 0.13 +0.4 530,066 - BACOVA_04584 0.15 +0.7 530,075 - BACOVA_04584 0.15 +0.2 530,077 - BACOVA_04584 0.16 +0.3 530,077 - BACOVA_04584 0.16 -0.6 530,105 + BACOVA_04584 0.18 +0.3 530,105 - BACOVA_04584 0.18 +0.8 530,106 - BACOVA_04584 0.18 +0.2 530,138 + BACOVA_04584 0.20 -1.4 530,138 + BACOVA_04584 0.20 -0.5 530,138 + BACOVA_04584 0.20 +0.3 530,139 - BACOVA_04584 0.21 -0.5 530,146 - BACOVA_04584 0.21 +2.1 530,146 - BACOVA_04584 0.21 -0.8 530,146 - BACOVA_04584 0.21 +0.3 530,225 + BACOVA_04584 0.27 +0.4 530,250 - BACOVA_04584 0.29 +1.3 530,291 + BACOVA_04584 0.32 -0.4 530,291 + BACOVA_04584 0.32 -0.2 530,292 - BACOVA_04584 0.33 -0.4 530,298 + BACOVA_04584 0.33 -1.0 530,298 + BACOVA_04584 0.33 +0.2 530,299 - BACOVA_04584 0.33 -0.2 530,299 - BACOVA_04584 0.33 -0.2 530,299 - BACOVA_04584 0.33 -0.6 530,388 - BACOVA_04584 0.40 +0.8 530,406 - BACOVA_04584 0.42 +0.6 530,469 + BACOVA_04584 0.46 +0.1 530,470 - BACOVA_04584 0.47 +0.3 530,470 - BACOVA_04584 0.47 +0.3 530,483 + BACOVA_04584 0.48 -0.1 530,483 + BACOVA_04584 0.48 -0.9 530,484 - BACOVA_04584 0.48 +1.5 530,547 - BACOVA_04584 0.53 -0.7 530,576 + BACOVA_04584 0.55 +0.4 530,577 - BACOVA_04584 0.55 +0.5 530,577 - BACOVA_04584 0.55 +0.2 530,578 + BACOVA_04584 0.55 +1.1 530,579 - BACOVA_04584 0.55 +0.5 530,579 - BACOVA_04584 0.55 -0.2 530,579 - BACOVA_04584 0.55 +0.7 530,592 + BACOVA_04584 0.56 -0.4 530,592 + BACOVA_04584 0.56 +1.1 530,593 - BACOVA_04584 0.56 -1.1 530,593 - BACOVA_04584 0.56 +0.1 530,595 - BACOVA_04584 0.56 -0.8 530,595 - BACOVA_04584 0.56 +0.3 530,614 - BACOVA_04584 0.58 -0.1 530,630 + BACOVA_04584 0.59 -0.0 530,630 + BACOVA_04584 0.59 +0.0 530,661 - BACOVA_04584 0.62 +0.3 530,662 + BACOVA_04584 0.62 +0.2 530,697 + BACOVA_04584 0.64 +0.9 530,697 + BACOVA_04584 0.64 -1.2
Or see this region's nucleotide sequence