Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03592 and BACOVA_03593 are separated by 31 nucleotides BACOVA_03593 and BACOVA_03594 are separated by 71 nucleotides BACOVA_03594 and BACOVA_03595 are separated by 119 nucleotides BACOVA_03595 and BACOVA_03596 are separated by 150 nucleotides
BACOVA_03592: BACOVA_03592 - arginine repressor, C-terminal domain protein, at 386,677 to 387,150
_03592
BACOVA_03593: BACOVA_03593 - hypothetical protein, at 387,182 to 387,346
_03593
BACOVA_03594: BACOVA_03594 - RNA polymerase sigma-70 factor, at 387,418 to 387,990
_03594
BACOVA_03595: BACOVA_03595 - sigma factor regulatory protein, FecR/PupR family, at 388,110 to 389,132
_03595
BACOVA_03596: BACOVA_03596 - TonB-linked outer membrane protein, SusC/RagA family, at 389,283 to 392,858
_03596
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 387.153 kb on + strand at 387.155 kb on + strand at 387.188 kb on + strand at 387.189 kb on - strand at 387.189 kb on - strand at 387.265 kb on - strand, within BACOVA_03593 at 387.274 kb on - strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.275 kb on + strand, within BACOVA_03593 at 387.276 kb on - strand, within BACOVA_03593 at 387.276 kb on - strand, within BACOVA_03593 at 387.283 kb on + strand, within BACOVA_03593 at 387.285 kb on + strand, within BACOVA_03593 at 387.286 kb on - strand, within BACOVA_03593 at 387.286 kb on - strand, within BACOVA_03593 at 387.286 kb on - strand, within BACOVA_03593 at 387.334 kb on + strand at 387.341 kb on + strand at 387.384 kb on - strand at 387.401 kb on - strand at 387.417 kb on + strand at 387.418 kb on - strand at 387.422 kb on + strand at 387.423 kb on - strand at 387.432 kb on + strand at 387.465 kb on + strand at 387.465 kb on + strand at 387.466 kb on - strand at 387.466 kb on - strand at 387.496 kb on + strand, within BACOVA_03594 at 387.499 kb on + strand, within BACOVA_03594 at 387.507 kb on - strand, within BACOVA_03594 at 387.509 kb on + strand, within BACOVA_03594 at 387.509 kb on + strand, within BACOVA_03594 at 387.510 kb on - strand, within BACOVA_03594 at 387.510 kb on - strand, within BACOVA_03594 at 387.526 kb on + strand, within BACOVA_03594 at 387.526 kb on + strand, within BACOVA_03594 at 387.530 kb on - strand, within BACOVA_03594 at 387.609 kb on - strand, within BACOVA_03594 at 387.668 kb on + strand, within BACOVA_03594 at 387.705 kb on + strand, within BACOVA_03594 at 387.705 kb on + strand, within BACOVA_03594 at 387.706 kb on - strand, within BACOVA_03594 at 387.706 kb on - strand, within BACOVA_03594 at 387.751 kb on + strand, within BACOVA_03594 at 387.751 kb on + strand, within BACOVA_03594 at 387.751 kb on + strand, within BACOVA_03594 at 387.752 kb on - strand, within BACOVA_03594 at 387.752 kb on - strand, within BACOVA_03594 at 387.847 kb on - strand, within BACOVA_03594 at 387.854 kb on - strand, within BACOVA_03594 at 387.855 kb on + strand, within BACOVA_03594 at 387.876 kb on - strand, within BACOVA_03594 at 387.929 kb on + strand, within BACOVA_03594 at 387.930 kb on - strand, within BACOVA_03594 at 387.949 kb on + strand at 387.950 kb on - strand at 387.953 kb on + strand at 387.963 kb on + strand at 387.963 kb on + strand at 387.971 kb on + strand at 387.972 kb on - strand at 388.016 kb on + strand at 388.016 kb on + strand at 388.078 kb on - strand at 388.090 kb on + strand at 388.105 kb on - strand at 388.120 kb on + strand at 388.121 kb on - strand at 388.121 kb on - strand at 388.131 kb on - strand at 388.133 kb on - strand at 388.166 kb on + strand at 388.172 kb on - strand at 388.195 kb on + strand at 388.195 kb on + strand at 388.252 kb on - strand, within BACOVA_03595 at 388.252 kb on - strand, within BACOVA_03595 at 388.252 kb on - strand, within BACOVA_03595 at 388.256 kb on - strand, within BACOVA_03595 at 388.256 kb on - strand, within BACOVA_03595 at 388.265 kb on - strand, within BACOVA_03595 at 388.271 kb on + strand, within BACOVA_03595 at 388.271 kb on + strand, within BACOVA_03595 at 388.273 kb on + strand, within BACOVA_03595 at 388.273 kb on + strand, within BACOVA_03595 at 388.274 kb on - strand, within BACOVA_03595 at 388.281 kb on - strand, within BACOVA_03595 at 388.294 kb on + strand, within BACOVA_03595 at 388.295 kb on - strand, within BACOVA_03595 at 388.295 kb on - strand, within BACOVA_03595 at 388.395 kb on - strand, within BACOVA_03595 at 388.419 kb on + strand, within BACOVA_03595 at 388.420 kb on - strand, within BACOVA_03595 at 388.501 kb on + strand, within BACOVA_03595 at 388.512 kb on - strand, within BACOVA_03595 at 388.539 kb on + strand, within BACOVA_03595 at 388.548 kb on + strand, within BACOVA_03595 at 388.549 kb on - strand, within BACOVA_03595 at 388.549 kb on - strand, within BACOVA_03595 at 388.649 kb on - strand, within BACOVA_03595 at 388.666 kb on + strand, within BACOVA_03595 at 388.713 kb on - strand, within BACOVA_03595 at 388.720 kb on + strand, within BACOVA_03595 at 388.727 kb on + strand, within BACOVA_03595 at 388.743 kb on - strand, within BACOVA_03595 at 388.743 kb on - strand, within BACOVA_03595 at 388.785 kb on + strand, within BACOVA_03595 at 388.786 kb on - strand, within BACOVA_03595 at 388.786 kb on - strand, within BACOVA_03595 at 388.786 kb on - strand, within BACOVA_03595 at 388.787 kb on + strand, within BACOVA_03595 at 388.790 kb on + strand, within BACOVA_03595 at 388.790 kb on + strand, within BACOVA_03595 at 388.790 kb on + strand, within BACOVA_03595 at 388.822 kb on + strand, within BACOVA_03595 at 388.822 kb on + strand, within BACOVA_03595 at 388.844 kb on + strand, within BACOVA_03595 at 388.851 kb on - strand, within BACOVA_03595 at 388.897 kb on - strand, within BACOVA_03595 at 388.978 kb on + strand, within BACOVA_03595 at 389.000 kb on + strand, within BACOVA_03595 at 389.001 kb on - strand, within BACOVA_03595 at 389.064 kb on + strand at 389.064 kb on + strand at 389.065 kb on - strand at 389.188 kb on + strand at 389.195 kb on - strand at 389.195 kb on - strand at 389.297 kb on + strand at 389.342 kb on - strand at 389.361 kb on - strand at 389.368 kb on + strand at 389.372 kb on - strand at 389.375 kb on + strand at 389.375 kb on + strand at 389.379 kb on - strand at 389.383 kb on + strand at 389.384 kb on - strand at 389.417 kb on + strand at 389.418 kb on - strand at 389.418 kb on - strand at 389.418 kb on - strand at 389.422 kb on - strand at 389.489 kb on - strand at 389.544 kb on - strand at 389.577 kb on - strand at 389.657 kb on + strand, within BACOVA_03596 at 389.699 kb on + strand, within BACOVA_03596 at 389.699 kb on + strand, within BACOVA_03596 at 389.738 kb on + strand, within BACOVA_03596 at 389.763 kb on - strand, within BACOVA_03596 at 389.823 kb on - strand, within BACOVA_03596 at 389.835 kb on - strand, within BACOVA_03596 at 389.841 kb on + strand, within BACOVA_03596 at 389.841 kb on + strand, within BACOVA_03596 at 389.841 kb on + strand, within BACOVA_03596 at 389.842 kb on - strand, within BACOVA_03596 at 389.842 kb on - strand, within BACOVA_03596 at 389.843 kb on + strand, within BACOVA_03596 at 389.850 kb on + strand, within BACOVA_03596 at 389.850 kb on + strand, within BACOVA_03596 at 389.852 kb on + strand, within BACOVA_03596 at 389.898 kb on - strand, within BACOVA_03596 at 389.898 kb on - strand, within BACOVA_03596 at 389.932 kb on + strand, within BACOVA_03596 at 389.932 kb on + strand, within BACOVA_03596 at 389.933 kb on - strand, within BACOVA_03596 at 389.952 kb on - strand, within BACOVA_03596 at 389.999 kb on + strand, within BACOVA_03596 at 390.007 kb on + strand, within BACOVA_03596 at 390.008 kb on - strand, within BACOVA_03596 at 390.027 kb on - strand, within BACOVA_03596 at 390.059 kb on + strand, within BACOVA_03596 at 390.060 kb on - strand, within BACOVA_03596 at 390.060 kb on - strand, within BACOVA_03596 at 390.060 kb on - strand, within BACOVA_03596 at 390.062 kb on + strand, within BACOVA_03596 at 390.063 kb on - strand, within BACOVA_03596 at 390.080 kb on + strand, within BACOVA_03596 at 390.105 kb on - strand, within BACOVA_03596 at 390.113 kb on + strand, within BACOVA_03596
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 387,153 + -1.3 387,155 + -0.4 387,188 + -3.3 387,189 - -0.7 387,189 - -0.3 387,265 - BACOVA_03593 0.50 -0.9 387,274 - BACOVA_03593 0.56 -1.4 387,275 + BACOVA_03593 0.56 -0.1 387,275 + BACOVA_03593 0.56 +0.4 387,275 + BACOVA_03593 0.56 -0.2 387,275 + BACOVA_03593 0.56 -0.6 387,275 + BACOVA_03593 0.56 +2.1 387,276 - BACOVA_03593 0.57 -0.2 387,276 - BACOVA_03593 0.57 +0.2 387,283 + BACOVA_03593 0.61 +0.6 387,285 + BACOVA_03593 0.62 -0.5 387,286 - BACOVA_03593 0.63 +0.7 387,286 - BACOVA_03593 0.63 +1.9 387,286 - BACOVA_03593 0.63 -0.1 387,334 + -1.4 387,341 + -0.8 387,384 - -0.7 387,401 - -0.1 387,417 + +0.3 387,418 - -0.1 387,422 + +0.2 387,423 - +0.7 387,432 + -0.7 387,465 + -1.0 387,465 + +1.3 387,466 - -0.3 387,466 - +0.1 387,496 + BACOVA_03594 0.14 +0.9 387,499 + BACOVA_03594 0.14 -0.2 387,507 - BACOVA_03594 0.16 +1.0 387,509 + BACOVA_03594 0.16 -0.3 387,509 + BACOVA_03594 0.16 -0.8 387,510 - BACOVA_03594 0.16 -0.0 387,510 - BACOVA_03594 0.16 -1.0 387,526 + BACOVA_03594 0.19 +0.1 387,526 + BACOVA_03594 0.19 +0.4 387,530 - BACOVA_03594 0.20 -0.0 387,609 - BACOVA_03594 0.33 -2.0 387,668 + BACOVA_03594 0.44 -0.2 387,705 + BACOVA_03594 0.50 -0.2 387,705 + BACOVA_03594 0.50 -0.9 387,706 - BACOVA_03594 0.50 -2.6 387,706 - BACOVA_03594 0.50 +0.8 387,751 + BACOVA_03594 0.58 +0.1 387,751 + BACOVA_03594 0.58 +0.2 387,751 + BACOVA_03594 0.58 -0.3 387,752 - BACOVA_03594 0.58 -0.2 387,752 - BACOVA_03594 0.58 +0.4 387,847 - BACOVA_03594 0.75 -0.0 387,854 - BACOVA_03594 0.76 +0.6 387,855 + BACOVA_03594 0.76 -1.1 387,876 - BACOVA_03594 0.80 -0.6 387,929 + BACOVA_03594 0.89 -0.1 387,930 - BACOVA_03594 0.89 +0.5 387,949 + +0.2 387,950 - -0.7 387,953 + -0.2 387,963 + -0.1 387,963 + -0.6 387,971 + +0.1 387,972 - +1.6 388,016 + -0.3 388,016 + +0.7 388,078 - +1.4 388,090 + +1.0 388,105 - -0.1 388,120 + +0.7 388,121 - -0.1 388,121 - +0.3 388,131 - -0.3 388,133 - +0.4 388,166 + -0.0 388,172 - +2.0 388,195 + -1.4 388,195 + +0.9 388,252 - BACOVA_03595 0.14 -1.3 388,252 - BACOVA_03595 0.14 -0.4 388,252 - BACOVA_03595 0.14 -0.1 388,256 - BACOVA_03595 0.14 -0.2 388,256 - BACOVA_03595 0.14 -0.6 388,265 - BACOVA_03595 0.15 -0.1 388,271 + BACOVA_03595 0.16 -0.1 388,271 + BACOVA_03595 0.16 -1.9 388,273 + BACOVA_03595 0.16 -0.4 388,273 + BACOVA_03595 0.16 -0.2 388,274 - BACOVA_03595 0.16 -1.1 388,281 - BACOVA_03595 0.17 -0.0 388,294 + BACOVA_03595 0.18 -1.5 388,295 - BACOVA_03595 0.18 +0.3 388,295 - BACOVA_03595 0.18 +0.8 388,395 - BACOVA_03595 0.28 +0.5 388,419 + BACOVA_03595 0.30 -0.2 388,420 - BACOVA_03595 0.30 +0.9 388,501 + BACOVA_03595 0.38 +0.1 388,512 - BACOVA_03595 0.39 -1.0 388,539 + BACOVA_03595 0.42 -0.7 388,548 + BACOVA_03595 0.43 -1.2 388,549 - BACOVA_03595 0.43 -0.4 388,549 - BACOVA_03595 0.43 -0.2 388,649 - BACOVA_03595 0.53 -0.0 388,666 + BACOVA_03595 0.54 +0.4 388,713 - BACOVA_03595 0.59 -1.2 388,720 + BACOVA_03595 0.60 +0.3 388,727 + BACOVA_03595 0.60 +2.4 388,743 - BACOVA_03595 0.62 +0.1 388,743 - BACOVA_03595 0.62 -0.0 388,785 + BACOVA_03595 0.66 +0.5 388,786 - BACOVA_03595 0.66 -0.2 388,786 - BACOVA_03595 0.66 +0.2 388,786 - BACOVA_03595 0.66 -1.8 388,787 + BACOVA_03595 0.66 -0.5 388,790 + BACOVA_03595 0.66 +0.1 388,790 + BACOVA_03595 0.66 +0.2 388,790 + BACOVA_03595 0.66 -1.3 388,822 + BACOVA_03595 0.70 -1.3 388,822 + BACOVA_03595 0.70 +1.7 388,844 + BACOVA_03595 0.72 +0.4 388,851 - BACOVA_03595 0.72 -0.0 388,897 - BACOVA_03595 0.77 -0.7 388,978 + BACOVA_03595 0.85 +0.6 389,000 + BACOVA_03595 0.87 -0.8 389,001 - BACOVA_03595 0.87 -0.9 389,064 + +1.6 389,064 + +1.9 389,065 - +0.4 389,188 + +0.9 389,195 - -0.0 389,195 - -0.3 389,297 + -0.0 389,342 - +0.4 389,361 - -1.0 389,368 + -0.4 389,372 - +1.1 389,375 + +0.7 389,375 + +0.9 389,379 - +0.4 389,383 + +1.4 389,384 - -0.9 389,417 + -0.1 389,418 - +0.0 389,418 - -1.0 389,418 - -0.6 389,422 - +0.0 389,489 - -0.3 389,544 - -0.9 389,577 - +0.1 389,657 + BACOVA_03596 0.10 +0.3 389,699 + BACOVA_03596 0.12 -0.8 389,699 + BACOVA_03596 0.12 -0.0 389,738 + BACOVA_03596 0.13 +1.1 389,763 - BACOVA_03596 0.13 +0.4 389,823 - BACOVA_03596 0.15 +0.2 389,835 - BACOVA_03596 0.15 -0.0 389,841 + BACOVA_03596 0.16 -0.3 389,841 + BACOVA_03596 0.16 -0.4 389,841 + BACOVA_03596 0.16 +1.9 389,842 - BACOVA_03596 0.16 +0.1 389,842 - BACOVA_03596 0.16 -1.8 389,843 + BACOVA_03596 0.16 -0.0 389,850 + BACOVA_03596 0.16 +0.1 389,850 + BACOVA_03596 0.16 -0.0 389,852 + BACOVA_03596 0.16 -0.7 389,898 - BACOVA_03596 0.17 -1.6 389,898 - BACOVA_03596 0.17 +0.1 389,932 + BACOVA_03596 0.18 +0.4 389,932 + BACOVA_03596 0.18 -1.0 389,933 - BACOVA_03596 0.18 +1.1 389,952 - BACOVA_03596 0.19 +0.6 389,999 + BACOVA_03596 0.20 +0.1 390,007 + BACOVA_03596 0.20 -0.7 390,008 - BACOVA_03596 0.20 -0.2 390,027 - BACOVA_03596 0.21 -0.4 390,059 + BACOVA_03596 0.22 -0.6 390,060 - BACOVA_03596 0.22 -0.1 390,060 - BACOVA_03596 0.22 -0.7 390,060 - BACOVA_03596 0.22 -1.9 390,062 + BACOVA_03596 0.22 +1.0 390,063 - BACOVA_03596 0.22 -0.0 390,080 + BACOVA_03596 0.22 +1.8 390,105 - BACOVA_03596 0.23 -0.2 390,113 + BACOVA_03596 0.23 +0.2
Or see this region's nucleotide sequence