Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00587

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00586 and BACOVA_00587 are separated by 20 nucleotidesBACOVA_00587 and BACOVA_00588 are separated by 21 nucleotides BACOVA_00586: BACOVA_00586 - tetratricopeptide repeat protein, at 20,025 to 23,306 _00586 BACOVA_00587: BACOVA_00587 - hypothetical protein, at 23,327 to 23,995 _00587 BACOVA_00588: BACOVA_00588 - hypothetical protein, at 24,017 to 25,633 _00588 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1at 22.360 kb on + strand, within BACOVA_00586at 22.361 kb on - strand, within BACOVA_00586at 22.372 kb on - strand, within BACOVA_00586at 22.397 kb on + strand, within BACOVA_00586at 22.446 kb on - strand, within BACOVA_00586at 22.454 kb on + strand, within BACOVA_00586at 22.454 kb on + strand, within BACOVA_00586at 22.454 kb on + strand, within BACOVA_00586at 22.455 kb on - strand, within BACOVA_00586at 22.455 kb on - strand, within BACOVA_00586at 22.455 kb on - strand, within BACOVA_00586at 22.458 kb on + strand, within BACOVA_00586at 22.459 kb on - strand, within BACOVA_00586at 22.529 kb on + strand, within BACOVA_00586at 22.555 kb on + strand, within BACOVA_00586at 22.560 kb on + strand, within BACOVA_00586at 22.561 kb on - strand, within BACOVA_00586at 22.591 kb on + strand, within BACOVA_00586at 22.670 kb on - strand, within BACOVA_00586at 22.681 kb on - strand, within BACOVA_00586at 22.689 kb on - strand, within BACOVA_00586at 22.702 kb on + strand, within BACOVA_00586at 22.703 kb on - strand, within BACOVA_00586at 22.703 kb on - strand, within BACOVA_00586at 22.703 kb on - strand, within BACOVA_00586at 22.706 kb on - strand, within BACOVA_00586at 22.760 kb on - strand, within BACOVA_00586at 22.770 kb on - strand, within BACOVA_00586at 22.779 kb on + strand, within BACOVA_00586at 22.791 kb on + strand, within BACOVA_00586at 22.792 kb on - strand, within BACOVA_00586at 22.827 kb on + strand, within BACOVA_00586at 22.827 kb on + strand, within BACOVA_00586at 22.827 kb on + strand, within BACOVA_00586at 22.832 kb on - strand, within BACOVA_00586at 22.850 kb on + strand, within BACOVA_00586at 22.857 kb on + strand, within BACOVA_00586at 22.932 kb on - strand, within BACOVA_00586at 22.932 kb on - strand, within BACOVA_00586at 22.936 kb on + strand, within BACOVA_00586at 22.991 kb on - strandat 22.998 kb on - strandat 23.047 kb on + strandat 23.048 kb on - strandat 23.053 kb on - strandat 23.146 kb on + strandat 23.147 kb on - strandat 23.148 kb on + strandat 23.148 kb on + strandat 23.148 kb on + strandat 23.149 kb on - strandat 23.149 kb on - strandat 23.175 kb on - strandat 23.198 kb on + strandat 23.199 kb on - strandat 23.229 kb on + strandat 23.229 kb on + strandat 23.229 kb on + strandat 23.229 kb on + strandat 23.257 kb on + strandat 23.272 kb on - strandat 23.272 kb on - strandat 23.283 kb on + strandat 23.289 kb on + strandat 23.289 kb on + strandat 23.306 kb on + strandat 23.308 kb on + strandat 23.309 kb on - strandat 23.309 kb on - strandat 23.312 kb on - strandat 23.334 kb on - strandat 23.368 kb on + strandat 23.455 kb on + strand, within BACOVA_00587at 23.615 kb on + strand, within BACOVA_00587at 23.615 kb on + strand, within BACOVA_00587at 23.615 kb on + strand, within BACOVA_00587at 23.616 kb on - strand, within BACOVA_00587at 23.616 kb on - strand, within BACOVA_00587at 23.622 kb on - strand, within BACOVA_00587at 23.670 kb on + strand, within BACOVA_00587at 23.670 kb on + strand, within BACOVA_00587at 23.670 kb on + strand, within BACOVA_00587at 23.670 kb on + strand, within BACOVA_00587at 23.671 kb on - strand, within BACOVA_00587at 23.671 kb on - strand, within BACOVA_00587at 23.671 kb on - strand, within BACOVA_00587at 23.727 kb on + strand, within BACOVA_00587at 24.025 kb on + strandat 24.031 kb on + strandat 24.031 kb on + strandat 24.032 kb on - strandat 24.067 kb on + strandat 24.072 kb on + strandat 24.072 kb on + strandat 24.072 kb on + strandat 24.073 kb on - strandat 24.081 kb on - strandat 24.081 kb on - strandat 24.086 kb on - strandat 24.141 kb on - strandat 24.204 kb on + strand, within BACOVA_00588at 24.205 kb on - strand, within BACOVA_00588at 24.223 kb on + strand, within BACOVA_00588at 24.224 kb on - strand, within BACOVA_00588at 24.224 kb on - strand, within BACOVA_00588at 24.255 kb on + strand, within BACOVA_00588at 24.257 kb on + strand, within BACOVA_00588at 24.258 kb on - strand, within BACOVA_00588at 24.308 kb on - strand, within BACOVA_00588at 24.322 kb on - strand, within BACOVA_00588at 24.322 kb on - strand, within BACOVA_00588at 24.324 kb on + strand, within BACOVA_00588at 24.324 kb on + strand, within BACOVA_00588at 24.325 kb on - strand, within BACOVA_00588at 24.325 kb on - strand, within BACOVA_00588at 24.329 kb on + strand, within BACOVA_00588at 24.358 kb on - strand, within BACOVA_00588at 24.387 kb on + strand, within BACOVA_00588at 24.388 kb on - strand, within BACOVA_00588at 24.388 kb on - strand, within BACOVA_00588at 24.477 kb on - strand, within BACOVA_00588at 24.478 kb on + strand, within BACOVA_00588at 24.526 kb on + strand, within BACOVA_00588at 24.535 kb on - strand, within BACOVA_00588at 24.563 kb on - strand, within BACOVA_00588at 24.570 kb on + strand, within BACOVA_00588at 24.571 kb on - strand, within BACOVA_00588at 24.571 kb on - strand, within BACOVA_00588at 24.573 kb on + strand, within BACOVA_00588at 24.588 kb on - strand, within BACOVA_00588at 24.588 kb on - strand, within BACOVA_00588at 24.626 kb on - strand, within BACOVA_00588at 24.673 kb on + strand, within BACOVA_00588at 24.674 kb on - strand, within BACOVA_00588at 24.674 kb on - strand, within BACOVA_00588at 24.674 kb on - strand, within BACOVA_00588at 24.677 kb on - strand, within BACOVA_00588at 24.764 kb on + strand, within BACOVA_00588at 24.764 kb on + strand, within BACOVA_00588at 24.886 kb on + strand, within BACOVA_00588at 24.889 kb on + strand, within BACOVA_00588at 24.889 kb on + strand, within BACOVA_00588at 24.890 kb on - strand, within BACOVA_00588at 24.892 kb on - strand, within BACOVA_00588at 24.900 kb on + strand, within BACOVA_00588at 24.956 kb on - strand, within BACOVA_00588at 24.977 kb on + strand, within BACOVA_00588at 24.977 kb on + strand, within BACOVA_00588at 24.977 kb on + strand, within BACOVA_00588at 24.981 kb on - strand, within BACOVA_00588at 24.987 kb on - strand, within BACOVA_00588

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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22,360 + BACOVA_00586 0.71 +0.1
22,361 - BACOVA_00586 0.71 -0.7
22,372 - BACOVA_00586 0.72 -0.2
22,397 + BACOVA_00586 0.72 +0.8
22,446 - BACOVA_00586 0.74 +0.1
22,454 + BACOVA_00586 0.74 +0.9
22,454 + BACOVA_00586 0.74 -0.2
22,454 + BACOVA_00586 0.74 +0.6
22,455 - BACOVA_00586 0.74 +0.1
22,455 - BACOVA_00586 0.74 +0.2
22,455 - BACOVA_00586 0.74 -0.3
22,458 + BACOVA_00586 0.74 -0.4
22,459 - BACOVA_00586 0.74 +0.7
22,529 + BACOVA_00586 0.76 +0.9
22,555 + BACOVA_00586 0.77 +0.9
22,560 + BACOVA_00586 0.77 +0.1
22,561 - BACOVA_00586 0.77 -0.8
22,591 + BACOVA_00586 0.78 +1.6
22,670 - BACOVA_00586 0.81 -0.8
22,681 - BACOVA_00586 0.81 -0.3
22,689 - BACOVA_00586 0.81 -0.5
22,702 + BACOVA_00586 0.82 -0.1
22,703 - BACOVA_00586 0.82 +0.5
22,703 - BACOVA_00586 0.82 -0.2
22,703 - BACOVA_00586 0.82 +0.5
22,706 - BACOVA_00586 0.82 +0.2
22,760 - BACOVA_00586 0.83 -0.4
22,770 - BACOVA_00586 0.84 -1.8
22,779 + BACOVA_00586 0.84 -0.2
22,791 + BACOVA_00586 0.84 +0.0
22,792 - BACOVA_00586 0.84 -0.4
22,827 + BACOVA_00586 0.85 +0.8
22,827 + BACOVA_00586 0.85 -0.0
22,827 + BACOVA_00586 0.85 +0.2
22,832 - BACOVA_00586 0.86 -0.7
22,850 + BACOVA_00586 0.86 +0.3
22,857 + BACOVA_00586 0.86 -2.4
22,932 - BACOVA_00586 0.89 -0.1
22,932 - BACOVA_00586 0.89 +1.2
22,936 + BACOVA_00586 0.89 -0.1
22,991 - -0.0
22,998 - -0.2
23,047 + -0.8
23,048 - +0.7
23,053 - -0.0
23,146 + -0.4
23,147 - +0.5
23,148 + -0.7
23,148 + -0.3
23,148 + -0.8
23,149 - -0.7
23,149 - -0.1
23,175 - +0.7
23,198 + +0.1
23,199 - +0.6
23,229 + -0.4
23,229 + -0.1
23,229 + -0.4
23,229 + +0.8
23,257 + +0.1
23,272 - -0.5
23,272 - -0.1
23,283 + +0.5
23,289 + +0.8
23,289 + -0.5
23,306 + -0.7
23,308 + +0.4
23,309 - -1.6
23,309 - -0.6
23,312 - +0.5
23,334 - +0.2
23,368 + -0.3
23,455 + BACOVA_00587 0.19 +0.9
23,615 + BACOVA_00587 0.43 -0.9
23,615 + BACOVA_00587 0.43 -2.3
23,615 + BACOVA_00587 0.43 -1.1
23,616 - BACOVA_00587 0.43 -1.5
23,616 - BACOVA_00587 0.43 -1.0
23,622 - BACOVA_00587 0.44 +0.3
23,670 + BACOVA_00587 0.51 +0.5
23,670 + BACOVA_00587 0.51 -0.0
23,670 + BACOVA_00587 0.51 -1.6
23,670 + BACOVA_00587 0.51 -1.3
23,671 - BACOVA_00587 0.51 +0.1
23,671 - BACOVA_00587 0.51 +1.3
23,671 - BACOVA_00587 0.51 -0.7
23,727 + BACOVA_00587 0.60 +0.3
24,025 + +0.3
24,031 + +0.3
24,031 + -0.3
24,032 - -1.6
24,067 + -0.0
24,072 + -0.7
24,072 + +0.6
24,072 + +0.1
24,073 - -0.5
24,081 - +0.2
24,081 - -0.1
24,086 - -0.7
24,141 - -0.7
24,204 + BACOVA_00588 0.12 -0.9
24,205 - BACOVA_00588 0.12 -1.3
24,223 + BACOVA_00588 0.13 +0.5
24,224 - BACOVA_00588 0.13 +0.5
24,224 - BACOVA_00588 0.13 +0.2
24,255 + BACOVA_00588 0.15 -0.0
24,257 + BACOVA_00588 0.15 -0.1
24,258 - BACOVA_00588 0.15 +0.4
24,308 - BACOVA_00588 0.18 +0.5
24,322 - BACOVA_00588 0.19 -0.5
24,322 - BACOVA_00588 0.19 -0.6
24,324 + BACOVA_00588 0.19 -0.1
24,324 + BACOVA_00588 0.19 -0.3
24,325 - BACOVA_00588 0.19 +1.1
24,325 - BACOVA_00588 0.19 -0.1
24,329 + BACOVA_00588 0.19 +0.6
24,358 - BACOVA_00588 0.21 +0.5
24,387 + BACOVA_00588 0.23 -2.2
24,388 - BACOVA_00588 0.23 +0.9
24,388 - BACOVA_00588 0.23 -0.6
24,477 - BACOVA_00588 0.28 +0.5
24,478 + BACOVA_00588 0.29 -0.8
24,526 + BACOVA_00588 0.31 +0.4
24,535 - BACOVA_00588 0.32 -0.3
24,563 - BACOVA_00588 0.34 -0.9
24,570 + BACOVA_00588 0.34 +0.6
24,571 - BACOVA_00588 0.34 -0.7
24,571 - BACOVA_00588 0.34 -0.1
24,573 + BACOVA_00588 0.34 -0.2
24,588 - BACOVA_00588 0.35 +0.3
24,588 - BACOVA_00588 0.35 +0.3
24,626 - BACOVA_00588 0.38 +0.5
24,673 + BACOVA_00588 0.41 +1.1
24,674 - BACOVA_00588 0.41 +0.5
24,674 - BACOVA_00588 0.41 -0.3
24,674 - BACOVA_00588 0.41 +0.3
24,677 - BACOVA_00588 0.41 +0.7
24,764 + BACOVA_00588 0.46 +0.7
24,764 + BACOVA_00588 0.46 -0.3
24,886 + BACOVA_00588 0.54 +0.6
24,889 + BACOVA_00588 0.54 -0.2
24,889 + BACOVA_00588 0.54 +0.5
24,890 - BACOVA_00588 0.54 -0.6
24,892 - BACOVA_00588 0.54 -0.2
24,900 + BACOVA_00588 0.55 -1.7
24,956 - BACOVA_00588 0.58 -1.2
24,977 + BACOVA_00588 0.59 +0.2
24,977 + BACOVA_00588 0.59 -0.1
24,977 + BACOVA_00588 0.59 +1.1
24,981 - BACOVA_00588 0.60 +0.2
24,987 - BACOVA_00588 0.60 -0.4

Or see this region's nucleotide sequence