Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00261 and BACOVA_00262 are separated by 185 nucleotides BACOVA_00262 and BACOVA_00263 are separated by 77 nucleotides BACOVA_00263 and BACOVA_00264 are separated by 88 nucleotides BACOVA_00264 and BACOVA_00265 are separated by 78 nucleotides
BACOVA_00261: BACOVA_00261 - glycosyl hydrolase family 67 middle domain protein, at 49,320 to 51,431
_00261
BACOVA_00262: BACOVA_00262 - hypothetical protein, at 51,617 to 51,799
_00262
BACOVA_00263: BACOVA_00263 - hypothetical protein, at 51,877 to 51,999
_00263
BACOVA_00264: BACOVA_00264 - IPT/TIG domain protein, at 52,088 to 53,485
_00264
BACOVA_00265: BACOVA_00265 - TonB-linked outer membrane protein, SusC/RagA family, at 53,564 to 56,608
_00265
Position (kb) 52
53
54 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 51.136 kb on + strand, within BACOVA_00261 at 51.137 kb on - strand, within BACOVA_00261 at 51.207 kb on + strand, within BACOVA_00261 at 51.208 kb on - strand, within BACOVA_00261 at 51.242 kb on + strand at 51.372 kb on - strand at 51.408 kb on - strand at 51.421 kb on + strand at 51.429 kb on + strand at 51.429 kb on + strand at 51.430 kb on - strand at 51.430 kb on - strand at 51.461 kb on - strand at 51.467 kb on + strand at 51.468 kb on - strand at 51.479 kb on - strand at 51.500 kb on + strand at 51.534 kb on - strand at 51.541 kb on - strand at 51.541 kb on - strand at 51.547 kb on + strand at 51.550 kb on - strand at 51.550 kb on - strand at 51.555 kb on - strand at 51.555 kb on - strand at 51.618 kb on + strand at 51.628 kb on + strand at 51.649 kb on + strand, within BACOVA_00262 at 51.653 kb on + strand, within BACOVA_00262 at 51.683 kb on + strand, within BACOVA_00262 at 51.684 kb on - strand, within BACOVA_00262 at 51.684 kb on - strand, within BACOVA_00262 at 51.684 kb on - strand, within BACOVA_00262 at 51.710 kb on + strand, within BACOVA_00262 at 51.710 kb on + strand, within BACOVA_00262 at 51.711 kb on - strand, within BACOVA_00262 at 51.711 kb on - strand, within BACOVA_00262 at 51.711 kb on - strand, within BACOVA_00262 at 51.738 kb on - strand, within BACOVA_00262 at 51.756 kb on + strand, within BACOVA_00262 at 51.796 kb on - strand at 51.814 kb on - strand at 51.818 kb on - strand at 51.840 kb on - strand at 51.871 kb on + strand at 51.912 kb on - strand, within BACOVA_00263 at 51.937 kb on - strand, within BACOVA_00263 at 51.964 kb on + strand, within BACOVA_00263 at 51.971 kb on + strand, within BACOVA_00263 at 51.992 kb on + strand at 52.000 kb on + strand at 52.000 kb on + strand at 52.001 kb on - strand at 52.003 kb on - strand at 52.003 kb on - strand at 52.012 kb on - strand at 52.012 kb on - strand at 52.043 kb on - strand at 52.043 kb on - strand at 52.087 kb on + strand at 52.093 kb on - strand at 52.114 kb on - strand at 52.158 kb on + strand at 52.245 kb on + strand, within BACOVA_00264 at 52.249 kb on - strand, within BACOVA_00264 at 52.277 kb on - strand, within BACOVA_00264 at 52.290 kb on + strand, within BACOVA_00264 at 52.296 kb on + strand, within BACOVA_00264 at 52.296 kb on + strand, within BACOVA_00264 at 52.297 kb on - strand, within BACOVA_00264 at 52.298 kb on + strand, within BACOVA_00264 at 52.327 kb on + strand, within BACOVA_00264 at 52.353 kb on - strand, within BACOVA_00264 at 52.374 kb on + strand, within BACOVA_00264 at 52.374 kb on + strand, within BACOVA_00264 at 52.429 kb on - strand, within BACOVA_00264 at 52.429 kb on - strand, within BACOVA_00264 at 52.429 kb on - strand, within BACOVA_00264 at 52.504 kb on + strand, within BACOVA_00264 at 52.505 kb on - strand, within BACOVA_00264 at 52.508 kb on + strand, within BACOVA_00264 at 52.509 kb on - strand, within BACOVA_00264 at 52.509 kb on - strand, within BACOVA_00264 at 52.638 kb on - strand, within BACOVA_00264 at 52.704 kb on + strand, within BACOVA_00264 at 52.704 kb on + strand, within BACOVA_00264 at 52.704 kb on + strand, within BACOVA_00264 at 52.705 kb on - strand, within BACOVA_00264 at 52.724 kb on - strand, within BACOVA_00264 at 52.750 kb on + strand, within BACOVA_00264 at 52.757 kb on - strand, within BACOVA_00264 at 52.770 kb on + strand, within BACOVA_00264 at 52.771 kb on - strand, within BACOVA_00264 at 52.802 kb on - strand, within BACOVA_00264 at 52.802 kb on - strand, within BACOVA_00264 at 52.811 kb on + strand, within BACOVA_00264 at 52.858 kb on + strand, within BACOVA_00264 at 52.914 kb on - strand, within BACOVA_00264 at 52.914 kb on - strand, within BACOVA_00264 at 52.914 kb on - strand, within BACOVA_00264 at 52.915 kb on + strand, within BACOVA_00264 at 52.916 kb on - strand, within BACOVA_00264 at 52.916 kb on - strand, within BACOVA_00264 at 52.934 kb on - strand, within BACOVA_00264 at 52.934 kb on - strand, within BACOVA_00264 at 52.934 kb on - strand, within BACOVA_00264 at 52.937 kb on + strand, within BACOVA_00264 at 52.984 kb on - strand, within BACOVA_00264 at 52.984 kb on - strand, within BACOVA_00264 at 53.045 kb on + strand, within BACOVA_00264 at 53.046 kb on - strand, within BACOVA_00264 at 53.055 kb on - strand, within BACOVA_00264 at 53.075 kb on + strand, within BACOVA_00264 at 53.127 kb on + strand, within BACOVA_00264 at 53.140 kb on + strand, within BACOVA_00264 at 53.140 kb on + strand, within BACOVA_00264 at 53.140 kb on + strand, within BACOVA_00264 at 53.141 kb on - strand, within BACOVA_00264 at 53.141 kb on - strand, within BACOVA_00264 at 53.141 kb on - strand, within BACOVA_00264 at 53.141 kb on - strand, within BACOVA_00264 at 53.225 kb on + strand, within BACOVA_00264 at 53.225 kb on + strand, within BACOVA_00264 at 53.247 kb on - strand, within BACOVA_00264 at 53.278 kb on + strand, within BACOVA_00264 at 53.319 kb on - strand, within BACOVA_00264 at 53.319 kb on - strand, within BACOVA_00264 at 53.319 kb on - strand, within BACOVA_00264 at 53.352 kb on - strand at 53.402 kb on - strand at 53.484 kb on - strand at 53.484 kb on - strand at 53.487 kb on + strand at 53.488 kb on - strand at 53.496 kb on + strand at 53.501 kb on + strand at 53.502 kb on - strand at 53.512 kb on + strand at 53.523 kb on + strand at 53.529 kb on + strand at 53.530 kb on - strand at 53.533 kb on + strand at 53.533 kb on + strand at 53.533 kb on + strand at 53.533 kb on + strand at 53.536 kb on - strand at 53.536 kb on - strand at 53.585 kb on - strand at 53.605 kb on - strand at 53.643 kb on + strand at 53.644 kb on - strand at 53.644 kb on - strand at 53.677 kb on + strand at 53.678 kb on - strand at 53.684 kb on - strand at 53.696 kb on + strand at 53.696 kb on + strand at 53.697 kb on - strand at 53.702 kb on - strand at 53.704 kb on + strand at 53.721 kb on - strand at 53.725 kb on + strand at 53.726 kb on - strand at 53.773 kb on - strand at 53.796 kb on + strand at 53.796 kb on + strand at 53.797 kb on - strand at 53.797 kb on - strand at 53.819 kb on - strand at 53.821 kb on + strand at 53.821 kb on + strand at 53.822 kb on - strand at 53.822 kb on - strand at 53.868 kb on + strand at 53.901 kb on + strand, within BACOVA_00265 at 53.901 kb on + strand, within BACOVA_00265 at 53.974 kb on + strand, within BACOVA_00265 at 53.980 kb on + strand, within BACOVA_00265 at 53.980 kb on + strand, within BACOVA_00265 at 53.980 kb on + strand, within BACOVA_00265 at 53.989 kb on + strand, within BACOVA_00265 at 54.023 kb on - strand, within BACOVA_00265 at 54.023 kb on - strand, within BACOVA_00265 at 54.025 kb on + strand, within BACOVA_00265 at 54.026 kb on - strand, within BACOVA_00265 at 54.221 kb on - strand, within BACOVA_00265 at 54.287 kb on + strand, within BACOVA_00265 at 54.288 kb on - strand, within BACOVA_00265 at 54.322 kb on + strand, within BACOVA_00265 at 54.323 kb on - strand, within BACOVA_00265 at 54.323 kb on - strand, within BACOVA_00265 at 54.328 kb on + strand, within BACOVA_00265 at 54.329 kb on - strand, within BACOVA_00265 at 54.345 kb on - strand, within BACOVA_00265 at 54.395 kb on + strand, within BACOVA_00265 at 54.463 kb on + strand, within BACOVA_00265 at 54.478 kb on + strand, within BACOVA_00265
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 51,136 + BACOVA_00261 0.86 +0.4 51,137 - BACOVA_00261 0.86 -0.9 51,207 + BACOVA_00261 0.89 -0.1 51,208 - BACOVA_00261 0.89 -0.1 51,242 + +0.5 51,372 - -1.5 51,408 - -0.2 51,421 + +0.4 51,429 + -0.7 51,429 + +0.5 51,430 - +0.8 51,430 - +0.2 51,461 - -0.3 51,467 + -3.8 51,468 - +0.2 51,479 - -0.7 51,500 + +0.2 51,534 - -0.9 51,541 - -0.2 51,541 - +0.3 51,547 + +1.1 51,550 - +0.3 51,550 - +0.0 51,555 - +0.9 51,555 - -1.4 51,618 + -0.0 51,628 + +0.9 51,649 + BACOVA_00262 0.17 +0.2 51,653 + BACOVA_00262 0.20 +0.8 51,683 + BACOVA_00262 0.36 +1.9 51,684 - BACOVA_00262 0.37 -1.0 51,684 - BACOVA_00262 0.37 +0.4 51,684 - BACOVA_00262 0.37 +1.1 51,710 + BACOVA_00262 0.51 +0.5 51,710 + BACOVA_00262 0.51 -1.7 51,711 - BACOVA_00262 0.51 -0.4 51,711 - BACOVA_00262 0.51 +0.3 51,711 - BACOVA_00262 0.51 -0.0 51,738 - BACOVA_00262 0.66 -0.1 51,756 + BACOVA_00262 0.76 +0.9 51,796 - -0.4 51,814 - +0.7 51,818 - -0.4 51,840 - -1.2 51,871 + +0.2 51,912 - BACOVA_00263 0.28 +1.2 51,937 - BACOVA_00263 0.49 +0.8 51,964 + BACOVA_00263 0.71 +0.5 51,971 + BACOVA_00263 0.76 +0.5 51,992 + -1.4 52,000 + -0.9 52,000 + +0.0 52,001 - +0.0 52,003 - +0.8 52,003 - +0.2 52,012 - -0.2 52,012 - -0.2 52,043 - -0.5 52,043 - +0.2 52,087 + -1.6 52,093 - -0.8 52,114 - +1.2 52,158 + -1.2 52,245 + BACOVA_00264 0.11 -1.3 52,249 - BACOVA_00264 0.12 -0.5 52,277 - BACOVA_00264 0.14 -0.3 52,290 + BACOVA_00264 0.14 +0.5 52,296 + BACOVA_00264 0.15 +0.1 52,296 + BACOVA_00264 0.15 -0.9 52,297 - BACOVA_00264 0.15 -0.0 52,298 + BACOVA_00264 0.15 -0.4 52,327 + BACOVA_00264 0.17 -0.6 52,353 - BACOVA_00264 0.19 +0.7 52,374 + BACOVA_00264 0.20 +0.9 52,374 + BACOVA_00264 0.20 +0.1 52,429 - BACOVA_00264 0.24 +0.3 52,429 - BACOVA_00264 0.24 -0.0 52,429 - BACOVA_00264 0.24 -0.9 52,504 + BACOVA_00264 0.30 -0.0 52,505 - BACOVA_00264 0.30 -0.2 52,508 + BACOVA_00264 0.30 -0.2 52,509 - BACOVA_00264 0.30 -0.6 52,509 - BACOVA_00264 0.30 -0.8 52,638 - BACOVA_00264 0.39 +0.2 52,704 + BACOVA_00264 0.44 +1.3 52,704 + BACOVA_00264 0.44 -0.9 52,704 + BACOVA_00264 0.44 +1.3 52,705 - BACOVA_00264 0.44 +0.7 52,724 - BACOVA_00264 0.45 -0.2 52,750 + BACOVA_00264 0.47 -1.0 52,757 - BACOVA_00264 0.48 -0.9 52,770 + BACOVA_00264 0.49 +0.5 52,771 - BACOVA_00264 0.49 +0.8 52,802 - BACOVA_00264 0.51 -0.1 52,802 - BACOVA_00264 0.51 -1.1 52,811 + BACOVA_00264 0.52 -0.6 52,858 + BACOVA_00264 0.55 -1.1 52,914 - BACOVA_00264 0.59 -0.9 52,914 - BACOVA_00264 0.59 +0.4 52,914 - BACOVA_00264 0.59 -0.4 52,915 + BACOVA_00264 0.59 -0.2 52,916 - BACOVA_00264 0.59 -0.7 52,916 - BACOVA_00264 0.59 -0.8 52,934 - BACOVA_00264 0.61 +0.6 52,934 - BACOVA_00264 0.61 +0.5 52,934 - BACOVA_00264 0.61 -0.1 52,937 + BACOVA_00264 0.61 +0.2 52,984 - BACOVA_00264 0.64 -0.1 52,984 - BACOVA_00264 0.64 -0.1 53,045 + BACOVA_00264 0.68 +0.7 53,046 - BACOVA_00264 0.69 +0.1 53,055 - BACOVA_00264 0.69 -0.1 53,075 + BACOVA_00264 0.71 +1.0 53,127 + BACOVA_00264 0.74 -0.5 53,140 + BACOVA_00264 0.75 +0.5 53,140 + BACOVA_00264 0.75 +0.5 53,140 + BACOVA_00264 0.75 -0.2 53,141 - BACOVA_00264 0.75 -0.3 53,141 - BACOVA_00264 0.75 -0.3 53,141 - BACOVA_00264 0.75 +1.1 53,141 - BACOVA_00264 0.75 -0.7 53,225 + BACOVA_00264 0.81 +1.2 53,225 + BACOVA_00264 0.81 +0.2 53,247 - BACOVA_00264 0.83 -0.2 53,278 + BACOVA_00264 0.85 +0.1 53,319 - BACOVA_00264 0.88 -0.1 53,319 - BACOVA_00264 0.88 -0.3 53,319 - BACOVA_00264 0.88 +1.1 53,352 - -0.5 53,402 - -0.9 53,484 - +0.4 53,484 - -1.0 53,487 + -0.7 53,488 - +0.5 53,496 + +0.6 53,501 + +0.5 53,502 - -1.1 53,512 + -0.7 53,523 + -0.1 53,529 + -0.3 53,530 - -0.3 53,533 + +0.6 53,533 + +1.3 53,533 + -0.6 53,533 + +0.6 53,536 - -2.1 53,536 - -1.2 53,585 - +0.5 53,605 - -0.4 53,643 + +0.5 53,644 - +1.7 53,644 - +0.2 53,677 + +0.1 53,678 - +0.2 53,684 - +0.7 53,696 + -0.9 53,696 + +1.1 53,697 - -0.0 53,702 - -0.8 53,704 + +0.1 53,721 - +0.3 53,725 + -0.5 53,726 - -0.3 53,773 - -0.6 53,796 + -0.7 53,796 + -0.4 53,797 - -0.3 53,797 - -1.2 53,819 - -0.2 53,821 + +0.1 53,821 + +0.8 53,822 - +0.1 53,822 - -2.6 53,868 + -0.4 53,901 + BACOVA_00265 0.11 +0.6 53,901 + BACOVA_00265 0.11 -0.7 53,974 + BACOVA_00265 0.13 +0.4 53,980 + BACOVA_00265 0.14 -0.0 53,980 + BACOVA_00265 0.14 +0.5 53,980 + BACOVA_00265 0.14 +0.5 53,989 + BACOVA_00265 0.14 +1.6 54,023 - BACOVA_00265 0.15 +0.5 54,023 - BACOVA_00265 0.15 -0.7 54,025 + BACOVA_00265 0.15 -0.2 54,026 - BACOVA_00265 0.15 -1.2 54,221 - BACOVA_00265 0.22 +0.2 54,287 + BACOVA_00265 0.24 +1.5 54,288 - BACOVA_00265 0.24 -0.1 54,322 + BACOVA_00265 0.25 +0.9 54,323 - BACOVA_00265 0.25 +1.5 54,323 - BACOVA_00265 0.25 -0.4 54,328 + BACOVA_00265 0.25 -1.8 54,329 - BACOVA_00265 0.25 +0.2 54,345 - BACOVA_00265 0.26 +0.1 54,395 + BACOVA_00265 0.27 +0.8 54,463 + BACOVA_00265 0.30 +0.2 54,478 + BACOVA_00265 0.30 -0.8
Or see this region's nucleotide sequence