Experiment: iri MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02453 and OHPLBJKB_02454 are separated by 159 nucleotides OHPLBJKB_02454 and OHPLBJKB_02455 are separated by 384 nucleotides OHPLBJKB_02455 and OHPLBJKB_02456 are separated by 361 nucleotides
OHPLBJKB_02453: OHPLBJKB_02453 - Formyltetrahydrofolate deformylase, at 2,565,762 to 2,566,604
_02453
OHPLBJKB_02454: OHPLBJKB_02454 - tRNA-Tyr, at 2,566,764 to 2,566,848
_02454
OHPLBJKB_02455: OHPLBJKB_02455 - tRNA-Tyr, at 2,567,233 to 2,567,317
_02455
OHPLBJKB_02456: OHPLBJKB_02456 - Respiratory nitrate reductase 1 gamma chain, at 2,567,679 to 2,568,356
_02456
Position (kb)
2566
2567 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2565.779 kb on + strand at 2565.794 kb on + strand at 2565.795 kb on - strand at 2565.795 kb on - strand at 2565.827 kb on + strand at 2565.827 kb on + strand at 2565.827 kb on + strand at 2565.828 kb on - strand at 2565.828 kb on - strand at 2565.828 kb on - strand at 2565.828 kb on - strand at 2565.828 kb on - strand at 2565.830 kb on + strand at 2565.836 kb on + strand at 2565.837 kb on - strand at 2565.861 kb on - strand, within OHPLBJKB_02453 at 2565.865 kb on + strand, within OHPLBJKB_02453 at 2565.908 kb on + strand, within OHPLBJKB_02453 at 2565.935 kb on + strand, within OHPLBJKB_02453 at 2566.081 kb on - strand, within OHPLBJKB_02453 at 2566.113 kb on - strand, within OHPLBJKB_02453 at 2566.118 kb on + strand, within OHPLBJKB_02453 at 2566.128 kb on - strand, within OHPLBJKB_02453 at 2566.132 kb on + strand, within OHPLBJKB_02453 at 2566.132 kb on + strand, within OHPLBJKB_02453 at 2566.132 kb on + strand, within OHPLBJKB_02453 at 2566.133 kb on - strand, within OHPLBJKB_02453 at 2566.133 kb on - strand, within OHPLBJKB_02453 at 2566.236 kb on + strand, within OHPLBJKB_02453 at 2566.266 kb on + strand, within OHPLBJKB_02453 at 2566.266 kb on + strand, within OHPLBJKB_02453 at 2566.266 kb on + strand, within OHPLBJKB_02453 at 2566.266 kb on + strand, within OHPLBJKB_02453 at 2566.267 kb on - strand, within OHPLBJKB_02453 at 2566.267 kb on - strand, within OHPLBJKB_02453 at 2566.267 kb on - strand, within OHPLBJKB_02453 at 2566.269 kb on - strand, within OHPLBJKB_02453 at 2566.269 kb on - strand, within OHPLBJKB_02453 at 2566.269 kb on - strand, within OHPLBJKB_02453 at 2566.322 kb on + strand, within OHPLBJKB_02453 at 2566.322 kb on + strand, within OHPLBJKB_02453 at 2566.323 kb on - strand, within OHPLBJKB_02453 at 2566.377 kb on + strand, within OHPLBJKB_02453 at 2566.377 kb on + strand, within OHPLBJKB_02453 at 2566.378 kb on - strand, within OHPLBJKB_02453 at 2566.416 kb on + strand, within OHPLBJKB_02453 at 2566.416 kb on + strand, within OHPLBJKB_02453 at 2566.417 kb on - strand, within OHPLBJKB_02453 at 2566.417 kb on - strand, within OHPLBJKB_02453 at 2566.417 kb on - strand, within OHPLBJKB_02453 at 2566.478 kb on + strand, within OHPLBJKB_02453 at 2566.479 kb on - strand, within OHPLBJKB_02453 at 2566.482 kb on + strand, within OHPLBJKB_02453 at 2566.482 kb on + strand, within OHPLBJKB_02453 at 2566.482 kb on + strand, within OHPLBJKB_02453 at 2566.483 kb on - strand, within OHPLBJKB_02453 at 2566.483 kb on - strand, within OHPLBJKB_02453 at 2566.483 kb on - strand, within OHPLBJKB_02453 at 2566.483 kb on - strand, within OHPLBJKB_02453 at 2566.483 kb on - strand, within OHPLBJKB_02453 at 2566.483 kb on - strand, within OHPLBJKB_02453 at 2566.497 kb on - strand, within OHPLBJKB_02453 at 2566.497 kb on - strand, within OHPLBJKB_02453 at 2566.534 kb on + strand at 2566.535 kb on - strand at 2566.546 kb on + strand at 2566.548 kb on + strand at 2566.548 kb on + strand at 2566.549 kb on - strand at 2566.556 kb on - strand at 2566.653 kb on + strand at 2566.849 kb on + strand at 2566.849 kb on + strand at 2567.359 kb on + strand at 2567.359 kb on + strand at 2567.359 kb on + strand at 2567.509 kb on + strand at 2567.567 kb on + strand at 2567.567 kb on + strand at 2567.568 kb on - strand at 2567.584 kb on + strand at 2567.660 kb on + strand at 2567.660 kb on + strand at 2567.704 kb on + strand at 2567.704 kb on + strand at 2567.704 kb on + strand at 2567.708 kb on + strand at 2567.708 kb on + strand at 2567.708 kb on + strand at 2567.708 kb on + strand at 2567.708 kb on + strand at 2567.709 kb on - strand at 2567.709 kb on - strand at 2567.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction iri MOI1 remove 2,565,779 + +1.0 2,565,794 + -0.6 2,565,795 - +1.1 2,565,795 - +1.2 2,565,827 + +1.8 2,565,827 + +0.5 2,565,827 + -1.1 2,565,828 - +0.5 2,565,828 - +0.8 2,565,828 - -0.9 2,565,828 - +0.2 2,565,828 - -0.6 2,565,830 + +0.1 2,565,836 + -0.2 2,565,837 - -0.3 2,565,861 - OHPLBJKB_02453 0.12 +0.2 2,565,865 + OHPLBJKB_02453 0.12 -1.6 2,565,908 + OHPLBJKB_02453 0.17 -1.5 2,565,935 + OHPLBJKB_02453 0.21 -0.5 2,566,081 - OHPLBJKB_02453 0.38 +1.6 2,566,113 - OHPLBJKB_02453 0.42 -0.2 2,566,118 + OHPLBJKB_02453 0.42 +0.3 2,566,128 - OHPLBJKB_02453 0.43 +0.1 2,566,132 + OHPLBJKB_02453 0.44 -0.0 2,566,132 + OHPLBJKB_02453 0.44 -0.2 2,566,132 + OHPLBJKB_02453 0.44 -1.2 2,566,133 - OHPLBJKB_02453 0.44 +0.7 2,566,133 - OHPLBJKB_02453 0.44 -0.8 2,566,236 + OHPLBJKB_02453 0.56 -1.4 2,566,266 + OHPLBJKB_02453 0.60 -1.8 2,566,266 + OHPLBJKB_02453 0.60 -0.8 2,566,266 + OHPLBJKB_02453 0.60 -0.2 2,566,266 + OHPLBJKB_02453 0.60 +0.2 2,566,267 - OHPLBJKB_02453 0.60 +1.9 2,566,267 - OHPLBJKB_02453 0.60 +2.0 2,566,267 - OHPLBJKB_02453 0.60 -1.5 2,566,269 - OHPLBJKB_02453 0.60 -0.6 2,566,269 - OHPLBJKB_02453 0.60 +1.0 2,566,269 - OHPLBJKB_02453 0.60 -0.1 2,566,322 + OHPLBJKB_02453 0.66 -0.2 2,566,322 + OHPLBJKB_02453 0.66 -0.9 2,566,323 - OHPLBJKB_02453 0.67 +0.5 2,566,377 + OHPLBJKB_02453 0.73 -0.3 2,566,377 + OHPLBJKB_02453 0.73 +0.0 2,566,378 - OHPLBJKB_02453 0.73 +0.5 2,566,416 + OHPLBJKB_02453 0.78 +1.7 2,566,416 + OHPLBJKB_02453 0.78 +0.2 2,566,417 - OHPLBJKB_02453 0.78 +0.9 2,566,417 - OHPLBJKB_02453 0.78 -0.6 2,566,417 - OHPLBJKB_02453 0.78 -1.9 2,566,478 + OHPLBJKB_02453 0.85 +0.3 2,566,479 - OHPLBJKB_02453 0.85 -0.5 2,566,482 + OHPLBJKB_02453 0.85 +0.7 2,566,482 + OHPLBJKB_02453 0.85 +0.0 2,566,482 + OHPLBJKB_02453 0.85 +0.6 2,566,483 - OHPLBJKB_02453 0.86 +1.0 2,566,483 - OHPLBJKB_02453 0.86 -1.4 2,566,483 - OHPLBJKB_02453 0.86 -0.0 2,566,483 - OHPLBJKB_02453 0.86 -1.6 2,566,483 - OHPLBJKB_02453 0.86 -1.6 2,566,483 - OHPLBJKB_02453 0.86 -1.7 2,566,497 - OHPLBJKB_02453 0.87 -0.3 2,566,497 - OHPLBJKB_02453 0.87 -1.8 2,566,534 + +0.7 2,566,535 - +1.5 2,566,546 + -0.2 2,566,548 + -0.5 2,566,548 + +0.1 2,566,549 - +0.0 2,566,556 - -2.1 2,566,653 + -0.0 2,566,849 + -0.0 2,566,849 + -0.6 2,567,359 + -0.4 2,567,359 + +1.9 2,567,359 + +0.3 2,567,509 + +0.7 2,567,567 + -0.8 2,567,567 + -1.5 2,567,568 - -1.2 2,567,584 + -2.2 2,567,660 + +1.4 2,567,660 + +1.9 2,567,704 + -0.1 2,567,704 + -2.0 2,567,704 + -0.9 2,567,708 + +1.3 2,567,708 + -0.4 2,567,708 + -0.1 2,567,708 + +0.6 2,567,708 + +0.6 2,567,709 - +0.9 2,567,709 - -2.4 2,567,709 - -1.1
Or see this region's nucleotide sequence