Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00747

Experiment: iri MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00745 and OHPLBJKB_00746 overlap by 4 nucleotidesOHPLBJKB_00746 and OHPLBJKB_00747 overlap by 4 nucleotidesOHPLBJKB_00747 and OHPLBJKB_00748 are separated by 1 nucleotidesOHPLBJKB_00748 and OHPLBJKB_00749 are separated by 148 nucleotidesOHPLBJKB_00749 and OHPLBJKB_00750 are separated by 105 nucleotides OHPLBJKB_00745: OHPLBJKB_00745 - Type II secretion system protein J, at 768,100 to 768,705 _00745 OHPLBJKB_00746: OHPLBJKB_00746 - Putative type II secretion system protein K, at 768,702 to 769,679 _00746 OHPLBJKB_00747: OHPLBJKB_00747 - Type II secretion system protein L, at 769,676 to 770,854 _00747 OHPLBJKB_00748: OHPLBJKB_00748 - Type II secretion system protein M, at 770,856 to 771,392 _00748 OHPLBJKB_00749: OHPLBJKB_00749 - tRNA-Phe, at 771,541 to 771,616 _00749 OHPLBJKB_00750: OHPLBJKB_00750 - hypothetical protein, at 771,722 to 772,429 _00750 Position (kb) 769 770 771Strain fitness (log2 ratio) -2 -1 0 1 2at 768.698 kb on + strandat 768.698 kb on + strandat 768.699 kb on - strandat 768.764 kb on + strandat 768.764 kb on + strandat 768.764 kb on + strandat 768.764 kb on + strandat 768.764 kb on + strandat 768.765 kb on - strandat 768.855 kb on + strand, within OHPLBJKB_00746at 769.224 kb on + strand, within OHPLBJKB_00746at 769.355 kb on + strand, within OHPLBJKB_00746at 769.355 kb on + strand, within OHPLBJKB_00746at 769.355 kb on + strand, within OHPLBJKB_00746at 769.356 kb on - strand, within OHPLBJKB_00746at 769.361 kb on - strand, within OHPLBJKB_00746at 769.435 kb on + strand, within OHPLBJKB_00746at 769.435 kb on + strand, within OHPLBJKB_00746at 769.436 kb on - strand, within OHPLBJKB_00746at 769.515 kb on - strand, within OHPLBJKB_00746at 769.518 kb on - strand, within OHPLBJKB_00746at 769.528 kb on + strand, within OHPLBJKB_00746at 769.529 kb on - strand, within OHPLBJKB_00746at 769.557 kb on + strand, within OHPLBJKB_00746at 769.557 kb on + strand, within OHPLBJKB_00746at 769.558 kb on - strand, within OHPLBJKB_00746at 769.577 kb on + strand, within OHPLBJKB_00746at 769.616 kb on - strandat 769.741 kb on + strandat 769.762 kb on + strandat 769.763 kb on - strandat 769.826 kb on + strand, within OHPLBJKB_00747at 769.826 kb on + strand, within OHPLBJKB_00747at 769.827 kb on - strand, within OHPLBJKB_00747at 769.912 kb on - strand, within OHPLBJKB_00747at 770.011 kb on + strand, within OHPLBJKB_00747at 770.011 kb on + strand, within OHPLBJKB_00747at 770.012 kb on - strand, within OHPLBJKB_00747at 770.012 kb on - strand, within OHPLBJKB_00747at 770.098 kb on + strand, within OHPLBJKB_00747at 770.230 kb on - strand, within OHPLBJKB_00747at 770.318 kb on + strand, within OHPLBJKB_00747at 770.318 kb on + strand, within OHPLBJKB_00747at 770.319 kb on - strand, within OHPLBJKB_00747at 770.319 kb on - strand, within OHPLBJKB_00747at 770.553 kb on + strand, within OHPLBJKB_00747at 770.554 kb on - strand, within OHPLBJKB_00747at 770.709 kb on + strand, within OHPLBJKB_00747at 770.709 kb on + strand, within OHPLBJKB_00747at 770.724 kb on + strand, within OHPLBJKB_00747at 770.761 kb on + strandat 770.762 kb on - strandat 770.780 kb on + strandat 770.780 kb on + strandat 770.781 kb on - strandat 770.802 kb on + strandat 770.803 kb on - strandat 770.852 kb on + strandat 770.853 kb on - strandat 770.861 kb on - strandat 770.873 kb on + strandat 771.012 kb on + strand, within OHPLBJKB_00748at 771.012 kb on + strand, within OHPLBJKB_00748at 771.012 kb on + strand, within OHPLBJKB_00748at 771.013 kb on - strand, within OHPLBJKB_00748at 771.013 kb on - strand, within OHPLBJKB_00748at 771.013 kb on - strand, within OHPLBJKB_00748at 771.013 kb on - strand, within OHPLBJKB_00748at 771.013 kb on - strand, within OHPLBJKB_00748at 771.234 kb on - strand, within OHPLBJKB_00748at 771.263 kb on + strand, within OHPLBJKB_00748at 771.303 kb on + strand, within OHPLBJKB_00748at 771.406 kb on + strandat 771.407 kb on - strandat 771.407 kb on - strandat 771.407 kb on - strandat 771.409 kb on + strandat 771.409 kb on + strandat 771.409 kb on + strandat 771.409 kb on + strandat 771.410 kb on - strandat 771.410 kb on - strandat 771.410 kb on - strandat 771.415 kb on + strandat 771.445 kb on - strandat 771.461 kb on - strandat 771.461 kb on - strandat 771.462 kb on + strandat 771.463 kb on - strandat 771.467 kb on + strandat 771.539 kb on - strandat 771.672 kb on + strandat 771.691 kb on + strandat 771.691 kb on + strandat 771.691 kb on + strandat 771.691 kb on + strandat 771.691 kb on + strandat 771.692 kb on - strandat 771.805 kb on + strand, within OHPLBJKB_00750at 771.821 kb on + strand, within OHPLBJKB_00750at 771.822 kb on - strand, within OHPLBJKB_00750at 771.822 kb on - strand, within OHPLBJKB_00750at 771.843 kb on - strand, within OHPLBJKB_00750at 771.843 kb on - strand, within OHPLBJKB_00750

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Per-strain Table

Position Strand Gene LocusTag Fraction iri MOI1
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768,698 + -1.8
768,698 + +0.1
768,699 - -1.4
768,764 + -0.3
768,764 + +0.5
768,764 + -1.4
768,764 + -0.3
768,764 + +0.6
768,765 - -0.3
768,855 + OHPLBJKB_00746 0.16 -0.1
769,224 + OHPLBJKB_00746 0.53 -0.3
769,355 + OHPLBJKB_00746 0.67 +0.9
769,355 + OHPLBJKB_00746 0.67 +0.4
769,355 + OHPLBJKB_00746 0.67 -0.7
769,356 - OHPLBJKB_00746 0.67 +0.7
769,361 - OHPLBJKB_00746 0.67 +0.3
769,435 + OHPLBJKB_00746 0.75 -0.4
769,435 + OHPLBJKB_00746 0.75 +0.6
769,436 - OHPLBJKB_00746 0.75 -0.5
769,515 - OHPLBJKB_00746 0.83 -0.1
769,518 - OHPLBJKB_00746 0.83 +0.4
769,528 + OHPLBJKB_00746 0.84 +0.6
769,529 - OHPLBJKB_00746 0.85 -1.0
769,557 + OHPLBJKB_00746 0.87 -0.5
769,557 + OHPLBJKB_00746 0.87 -0.4
769,558 - OHPLBJKB_00746 0.88 -0.4
769,577 + OHPLBJKB_00746 0.89 -0.0
769,616 - -0.8
769,741 + -1.8
769,762 + +0.8
769,763 - +0.0
769,826 + OHPLBJKB_00747 0.13 +1.2
769,826 + OHPLBJKB_00747 0.13 -0.3
769,827 - OHPLBJKB_00747 0.13 -1.3
769,912 - OHPLBJKB_00747 0.20 +0.4
770,011 + OHPLBJKB_00747 0.28 -1.0
770,011 + OHPLBJKB_00747 0.28 +1.6
770,012 - OHPLBJKB_00747 0.28 -0.1
770,012 - OHPLBJKB_00747 0.28 +0.7
770,098 + OHPLBJKB_00747 0.36 -1.2
770,230 - OHPLBJKB_00747 0.47 +0.7
770,318 + OHPLBJKB_00747 0.54 +1.1
770,318 + OHPLBJKB_00747 0.54 -1.0
770,319 - OHPLBJKB_00747 0.55 +1.2
770,319 - OHPLBJKB_00747 0.55 -0.6
770,553 + OHPLBJKB_00747 0.74 -1.8
770,554 - OHPLBJKB_00747 0.74 -0.0
770,709 + OHPLBJKB_00747 0.88 +1.5
770,709 + OHPLBJKB_00747 0.88 -0.2
770,724 + OHPLBJKB_00747 0.89 -0.0
770,761 + -2.1
770,762 - +0.5
770,780 + -0.6
770,780 + +2.0
770,781 - -0.2
770,802 + +0.6
770,803 - -0.5
770,852 + -0.6
770,853 - +1.6
770,861 - +0.1
770,873 + -0.4
771,012 + OHPLBJKB_00748 0.29 -1.1
771,012 + OHPLBJKB_00748 0.29 -1.2
771,012 + OHPLBJKB_00748 0.29 -1.8
771,013 - OHPLBJKB_00748 0.29 -0.7
771,013 - OHPLBJKB_00748 0.29 -0.8
771,013 - OHPLBJKB_00748 0.29 +0.2
771,013 - OHPLBJKB_00748 0.29 +0.2
771,013 - OHPLBJKB_00748 0.29 -0.8
771,234 - OHPLBJKB_00748 0.70 +0.2
771,263 + OHPLBJKB_00748 0.76 -0.3
771,303 + OHPLBJKB_00748 0.83 -0.3
771,406 + -0.7
771,407 - -0.6
771,407 - -1.3
771,407 - +0.6
771,409 + +0.5
771,409 + -0.1
771,409 + -1.0
771,409 + +0.5
771,410 - +1.0
771,410 - +1.5
771,410 - -2.1
771,415 + +0.4
771,445 - +0.1
771,461 - -1.4
771,461 - -1.2
771,462 + -0.2
771,463 - +0.0
771,467 + +0.0
771,539 - +0.2
771,672 + -1.2
771,691 + -1.9
771,691 + +0.1
771,691 + -1.6
771,691 + +0.3
771,691 + +1.3
771,692 - +0.7
771,805 + OHPLBJKB_00750 0.12 -0.3
771,821 + OHPLBJKB_00750 0.14 -2.5
771,822 - OHPLBJKB_00750 0.14 +0.7
771,822 - OHPLBJKB_00750 0.14 +0.3
771,843 - OHPLBJKB_00750 0.17 +0.1
771,843 - OHPLBJKB_00750 0.17 +0.5

Or see this region's nucleotide sequence