Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00728

Experiment: iri MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00727 and OHPLBJKB_00728 overlap by 1 nucleotidesOHPLBJKB_00728 and OHPLBJKB_00729 are separated by 10 nucleotides OHPLBJKB_00727: OHPLBJKB_00727 - putative FAD-linked oxidoreductase, at 745,246 to 746,745 _00727 OHPLBJKB_00728: OHPLBJKB_00728 - hypothetical protein, at 746,745 to 747,797 _00728 OHPLBJKB_00729: OHPLBJKB_00729 - Lactate utilization protein A, at 747,808 to 749,031 _00729 Position (kb) 746 747 748Strain fitness (log2 ratio) -3 -2 -1 0 1at 745.776 kb on + strand, within OHPLBJKB_00727at 745.776 kb on + strand, within OHPLBJKB_00727at 745.777 kb on - strand, within OHPLBJKB_00727at 745.890 kb on + strand, within OHPLBJKB_00727at 745.890 kb on + strand, within OHPLBJKB_00727at 745.891 kb on - strand, within OHPLBJKB_00727at 745.920 kb on - strand, within OHPLBJKB_00727at 746.080 kb on - strand, within OHPLBJKB_00727at 746.151 kb on - strand, within OHPLBJKB_00727at 746.151 kb on - strand, within OHPLBJKB_00727at 746.283 kb on + strand, within OHPLBJKB_00727at 746.283 kb on + strand, within OHPLBJKB_00727at 746.283 kb on + strand, within OHPLBJKB_00727at 746.283 kb on + strand, within OHPLBJKB_00727at 746.283 kb on + strand, within OHPLBJKB_00727at 746.284 kb on - strand, within OHPLBJKB_00727at 746.284 kb on - strand, within OHPLBJKB_00727at 746.284 kb on - strand, within OHPLBJKB_00727at 746.296 kb on + strand, within OHPLBJKB_00727at 746.299 kb on + strand, within OHPLBJKB_00727at 746.382 kb on - strand, within OHPLBJKB_00727at 746.670 kb on - strandat 746.717 kb on + strandat 746.718 kb on - strandat 746.718 kb on - strandat 746.763 kb on + strandat 746.906 kb on + strand, within OHPLBJKB_00728at 746.906 kb on + strand, within OHPLBJKB_00728at 746.906 kb on + strand, within OHPLBJKB_00728at 746.907 kb on - strand, within OHPLBJKB_00728at 746.907 kb on - strand, within OHPLBJKB_00728at 746.907 kb on - strand, within OHPLBJKB_00728at 746.910 kb on + strand, within OHPLBJKB_00728at 746.911 kb on - strand, within OHPLBJKB_00728at 746.911 kb on - strand, within OHPLBJKB_00728at 747.213 kb on + strand, within OHPLBJKB_00728at 747.214 kb on - strand, within OHPLBJKB_00728at 747.353 kb on + strand, within OHPLBJKB_00728at 747.361 kb on + strand, within OHPLBJKB_00728at 747.361 kb on + strand, within OHPLBJKB_00728at 747.361 kb on + strand, within OHPLBJKB_00728at 747.361 kb on + strand, within OHPLBJKB_00728at 747.361 kb on + strand, within OHPLBJKB_00728at 747.361 kb on + strand, within OHPLBJKB_00728at 747.361 kb on + strand, within OHPLBJKB_00728at 747.361 kb on + strand, within OHPLBJKB_00728at 747.361 kb on + strand, within OHPLBJKB_00728at 747.362 kb on - strand, within OHPLBJKB_00728at 747.362 kb on - strand, within OHPLBJKB_00728at 747.362 kb on - strand, within OHPLBJKB_00728at 747.362 kb on - strand, within OHPLBJKB_00728at 747.362 kb on - strand, within OHPLBJKB_00728at 747.362 kb on - strand, within OHPLBJKB_00728at 747.362 kb on - strand, within OHPLBJKB_00728at 747.362 kb on - strand, within OHPLBJKB_00728at 747.362 kb on - strand, within OHPLBJKB_00728at 747.366 kb on + strand, within OHPLBJKB_00728at 747.366 kb on + strand, within OHPLBJKB_00728at 747.367 kb on - strand, within OHPLBJKB_00728at 747.367 kb on - strand, within OHPLBJKB_00728at 747.367 kb on - strand, within OHPLBJKB_00728at 747.512 kb on + strand, within OHPLBJKB_00728at 747.512 kb on + strand, within OHPLBJKB_00728at 747.512 kb on + strand, within OHPLBJKB_00728at 747.512 kb on + strand, within OHPLBJKB_00728at 747.517 kb on + strand, within OHPLBJKB_00728at 747.518 kb on - strand, within OHPLBJKB_00728at 747.715 kb on + strandat 747.715 kb on + strandat 747.737 kb on + strandat 747.783 kb on + strandat 747.783 kb on + strandat 747.808 kb on - strandat 747.822 kb on - strandat 747.822 kb on - strandat 747.919 kb on + strandat 747.919 kb on + strandat 747.920 kb on - strandat 747.964 kb on + strand, within OHPLBJKB_00729at 747.965 kb on - strand, within OHPLBJKB_00729at 747.965 kb on - strand, within OHPLBJKB_00729at 747.972 kb on + strand, within OHPLBJKB_00729at 748.005 kb on + strand, within OHPLBJKB_00729at 748.005 kb on + strand, within OHPLBJKB_00729at 748.045 kb on - strand, within OHPLBJKB_00729at 748.149 kb on - strand, within OHPLBJKB_00729at 748.172 kb on + strand, within OHPLBJKB_00729at 748.172 kb on + strand, within OHPLBJKB_00729at 748.173 kb on - strand, within OHPLBJKB_00729at 748.282 kb on - strand, within OHPLBJKB_00729at 748.319 kb on + strand, within OHPLBJKB_00729at 748.319 kb on + strand, within OHPLBJKB_00729at 748.320 kb on - strand, within OHPLBJKB_00729at 748.345 kb on - strand, within OHPLBJKB_00729at 748.345 kb on - strand, within OHPLBJKB_00729at 748.447 kb on + strand, within OHPLBJKB_00729at 748.447 kb on + strand, within OHPLBJKB_00729at 748.455 kb on + strand, within OHPLBJKB_00729at 748.455 kb on + strand, within OHPLBJKB_00729at 748.491 kb on + strand, within OHPLBJKB_00729at 748.494 kb on + strand, within OHPLBJKB_00729at 748.495 kb on - strand, within OHPLBJKB_00729at 748.607 kb on + strand, within OHPLBJKB_00729at 748.607 kb on + strand, within OHPLBJKB_00729at 748.607 kb on + strand, within OHPLBJKB_00729at 748.607 kb on + strand, within OHPLBJKB_00729at 748.607 kb on + strand, within OHPLBJKB_00729at 748.607 kb on + strand, within OHPLBJKB_00729at 748.607 kb on + strand, within OHPLBJKB_00729at 748.607 kb on + strand, within OHPLBJKB_00729at 748.608 kb on - strand, within OHPLBJKB_00729at 748.608 kb on - strand, within OHPLBJKB_00729at 748.608 kb on - strand, within OHPLBJKB_00729at 748.608 kb on - strand, within OHPLBJKB_00729at 748.608 kb on - strand, within OHPLBJKB_00729at 748.608 kb on - strand, within OHPLBJKB_00729at 748.609 kb on + strand, within OHPLBJKB_00729at 748.652 kb on + strand, within OHPLBJKB_00729at 748.736 kb on + strand, within OHPLBJKB_00729at 748.736 kb on + strand, within OHPLBJKB_00729at 748.736 kb on + strand, within OHPLBJKB_00729at 748.737 kb on - strand, within OHPLBJKB_00729at 748.794 kb on + strand, within OHPLBJKB_00729at 748.795 kb on - strand, within OHPLBJKB_00729

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Per-strain Table

Position Strand Gene LocusTag Fraction iri MOI1
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745,776 + OHPLBJKB_00727 0.35 -0.2
745,776 + OHPLBJKB_00727 0.35 +0.1
745,777 - OHPLBJKB_00727 0.35 -2.0
745,890 + OHPLBJKB_00727 0.43 -0.3
745,890 + OHPLBJKB_00727 0.43 -0.0
745,891 - OHPLBJKB_00727 0.43 -0.7
745,920 - OHPLBJKB_00727 0.45 +0.3
746,080 - OHPLBJKB_00727 0.56 -0.4
746,151 - OHPLBJKB_00727 0.60 +0.0
746,151 - OHPLBJKB_00727 0.60 -0.1
746,283 + OHPLBJKB_00727 0.69 -1.1
746,283 + OHPLBJKB_00727 0.69 -1.8
746,283 + OHPLBJKB_00727 0.69 -1.3
746,283 + OHPLBJKB_00727 0.69 +0.8
746,283 + OHPLBJKB_00727 0.69 +0.2
746,284 - OHPLBJKB_00727 0.69 +0.3
746,284 - OHPLBJKB_00727 0.69 +1.1
746,284 - OHPLBJKB_00727 0.69 -0.4
746,296 + OHPLBJKB_00727 0.70 +0.9
746,299 + OHPLBJKB_00727 0.70 -1.7
746,382 - OHPLBJKB_00727 0.76 -0.0
746,670 - -0.4
746,717 + +0.8
746,718 - +0.2
746,718 - -1.5
746,763 + -0.6
746,906 + OHPLBJKB_00728 0.15 -1.0
746,906 + OHPLBJKB_00728 0.15 -1.4
746,906 + OHPLBJKB_00728 0.15 -1.0
746,907 - OHPLBJKB_00728 0.15 -1.1
746,907 - OHPLBJKB_00728 0.15 +0.7
746,907 - OHPLBJKB_00728 0.15 +0.8
746,910 + OHPLBJKB_00728 0.16 +1.1
746,911 - OHPLBJKB_00728 0.16 -0.1
746,911 - OHPLBJKB_00728 0.16 +0.3
747,213 + OHPLBJKB_00728 0.44 +1.1
747,214 - OHPLBJKB_00728 0.45 +0.2
747,353 + OHPLBJKB_00728 0.58 -0.6
747,361 + OHPLBJKB_00728 0.58 +0.3
747,361 + OHPLBJKB_00728 0.58 -0.9
747,361 + OHPLBJKB_00728 0.58 +0.5
747,361 + OHPLBJKB_00728 0.58 +0.3
747,361 + OHPLBJKB_00728 0.58 +0.7
747,361 + OHPLBJKB_00728 0.58 +0.4
747,361 + OHPLBJKB_00728 0.58 +0.8
747,361 + OHPLBJKB_00728 0.58 -0.9
747,361 + OHPLBJKB_00728 0.58 -0.1
747,362 - OHPLBJKB_00728 0.59 +0.0
747,362 - OHPLBJKB_00728 0.59 +0.2
747,362 - OHPLBJKB_00728 0.59 -1.2
747,362 - OHPLBJKB_00728 0.59 +0.7
747,362 - OHPLBJKB_00728 0.59 -0.2
747,362 - OHPLBJKB_00728 0.59 +0.3
747,362 - OHPLBJKB_00728 0.59 +0.4
747,362 - OHPLBJKB_00728 0.59 +0.6
747,362 - OHPLBJKB_00728 0.59 -0.2
747,366 + OHPLBJKB_00728 0.59 +1.0
747,366 + OHPLBJKB_00728 0.59 +1.1
747,367 - OHPLBJKB_00728 0.59 +0.5
747,367 - OHPLBJKB_00728 0.59 -0.3
747,367 - OHPLBJKB_00728 0.59 -1.4
747,512 + OHPLBJKB_00728 0.73 +0.6
747,512 + OHPLBJKB_00728 0.73 +0.1
747,512 + OHPLBJKB_00728 0.73 +0.1
747,512 + OHPLBJKB_00728 0.73 -1.2
747,517 + OHPLBJKB_00728 0.73 -0.1
747,518 - OHPLBJKB_00728 0.73 -1.7
747,715 + -0.5
747,715 + +0.0
747,737 + +0.2
747,783 + -0.5
747,783 + -0.3
747,808 - -0.8
747,822 - +0.8
747,822 - +0.3
747,919 + +0.3
747,919 + -2.0
747,920 - -0.6
747,964 + OHPLBJKB_00729 0.13 +0.3
747,965 - OHPLBJKB_00729 0.13 -1.7
747,965 - OHPLBJKB_00729 0.13 -0.1
747,972 + OHPLBJKB_00729 0.13 +0.7
748,005 + OHPLBJKB_00729 0.16 +0.9
748,005 + OHPLBJKB_00729 0.16 +0.0
748,045 - OHPLBJKB_00729 0.19 -1.0
748,149 - OHPLBJKB_00729 0.28 +0.1
748,172 + OHPLBJKB_00729 0.30 +0.0
748,172 + OHPLBJKB_00729 0.30 -0.6
748,173 - OHPLBJKB_00729 0.30 -0.6
748,282 - OHPLBJKB_00729 0.39 +0.4
748,319 + OHPLBJKB_00729 0.42 -0.8
748,319 + OHPLBJKB_00729 0.42 +0.3
748,320 - OHPLBJKB_00729 0.42 +0.7
748,345 - OHPLBJKB_00729 0.44 +0.2
748,345 - OHPLBJKB_00729 0.44 -1.0
748,447 + OHPLBJKB_00729 0.52 +0.7
748,447 + OHPLBJKB_00729 0.52 -0.6
748,455 + OHPLBJKB_00729 0.53 +0.2
748,455 + OHPLBJKB_00729 0.53 +0.2
748,491 + OHPLBJKB_00729 0.56 +0.1
748,494 + OHPLBJKB_00729 0.56 -1.6
748,495 - OHPLBJKB_00729 0.56 -0.8
748,607 + OHPLBJKB_00729 0.65 -0.0
748,607 + OHPLBJKB_00729 0.65 -0.3
748,607 + OHPLBJKB_00729 0.65 +0.2
748,607 + OHPLBJKB_00729 0.65 -0.8
748,607 + OHPLBJKB_00729 0.65 -0.6
748,607 + OHPLBJKB_00729 0.65 -0.5
748,607 + OHPLBJKB_00729 0.65 -0.5
748,607 + OHPLBJKB_00729 0.65 +0.5
748,608 - OHPLBJKB_00729 0.65 -2.9
748,608 - OHPLBJKB_00729 0.65 -0.2
748,608 - OHPLBJKB_00729 0.65 +0.3
748,608 - OHPLBJKB_00729 0.65 +0.4
748,608 - OHPLBJKB_00729 0.65 +1.3
748,608 - OHPLBJKB_00729 0.65 -0.8
748,609 + OHPLBJKB_00729 0.65 +0.3
748,652 + OHPLBJKB_00729 0.69 -1.1
748,736 + OHPLBJKB_00729 0.76 -0.4
748,736 + OHPLBJKB_00729 0.76 +0.7
748,736 + OHPLBJKB_00729 0.76 +0.6
748,737 - OHPLBJKB_00729 0.76 -0.8
748,794 + OHPLBJKB_00729 0.81 -0.7
748,795 - OHPLBJKB_00729 0.81 +0.0

Or see this region's nucleotide sequence