Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00721

Experiment: iri MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00720 and OHPLBJKB_00721 are separated by 35 nucleotidesOHPLBJKB_00721 and OHPLBJKB_00722 overlap by 1 nucleotidesOHPLBJKB_00722 and OHPLBJKB_00723 are separated by 31 nucleotides OHPLBJKB_00720: OHPLBJKB_00720 - Lipopolysaccharide export system permease protein LptG, at 737,506 to 738,585 _00720 OHPLBJKB_00721: OHPLBJKB_00721 - 8-amino-7-oxononanoate synthase, at 738,621 to 739,793 _00721 OHPLBJKB_00722: OHPLBJKB_00722 - Acyl carrier protein, at 739,793 to 740,041 _00722 OHPLBJKB_00723: OHPLBJKB_00723 - 2-alkyl-3-oxoalkanoate reductase, at 740,073 to 740,987 _00723 Position (kb) 738 739 740Strain fitness (log2 ratio) -2 -1 0 1at 737.949 kb on + strand, within OHPLBJKB_00720at 737.949 kb on + strand, within OHPLBJKB_00720at 737.950 kb on - strand, within OHPLBJKB_00720at 738.064 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.091 kb on - strand, within OHPLBJKB_00720at 738.171 kb on + strand, within OHPLBJKB_00720at 738.172 kb on - strand, within OHPLBJKB_00720at 738.218 kb on + strand, within OHPLBJKB_00720at 738.234 kb on + strand, within OHPLBJKB_00720at 738.234 kb on + strand, within OHPLBJKB_00720at 738.256 kb on - strand, within OHPLBJKB_00720at 738.262 kb on + strand, within OHPLBJKB_00720at 738.262 kb on + strand, within OHPLBJKB_00720at 738.262 kb on + strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.271 kb on + strand, within OHPLBJKB_00720at 738.272 kb on - strand, within OHPLBJKB_00720at 738.444 kb on - strand, within OHPLBJKB_00720at 738.488 kb on + strandat 738.488 kb on + strandat 738.489 kb on - strandat 738.489 kb on - strandat 738.562 kb on + strandat 738.562 kb on + strandat 738.563 kb on - strandat 738.568 kb on + strandat 738.568 kb on + strandat 738.569 kb on - strandat 738.583 kb on + strandat 738.584 kb on - strandat 738.687 kb on + strandat 738.687 kb on + strandat 738.748 kb on + strand, within OHPLBJKB_00721at 738.748 kb on + strand, within OHPLBJKB_00721at 738.748 kb on + strand, within OHPLBJKB_00721at 738.749 kb on - strand, within OHPLBJKB_00721at 738.749 kb on - strand, within OHPLBJKB_00721at 738.764 kb on + strand, within OHPLBJKB_00721at 738.765 kb on - strand, within OHPLBJKB_00721at 738.783 kb on + strand, within OHPLBJKB_00721at 738.784 kb on - strand, within OHPLBJKB_00721at 738.807 kb on + strand, within OHPLBJKB_00721at 738.830 kb on + strand, within OHPLBJKB_00721at 738.830 kb on + strand, within OHPLBJKB_00721at 738.830 kb on + strand, within OHPLBJKB_00721at 738.831 kb on - strand, within OHPLBJKB_00721at 738.831 kb on - strand, within OHPLBJKB_00721at 738.840 kb on + strand, within OHPLBJKB_00721at 738.841 kb on - strand, within OHPLBJKB_00721at 738.841 kb on - strand, within OHPLBJKB_00721at 739.082 kb on + strand, within OHPLBJKB_00721at 739.085 kb on + strand, within OHPLBJKB_00721at 739.238 kb on + strand, within OHPLBJKB_00721at 739.238 kb on + strand, within OHPLBJKB_00721at 739.238 kb on + strand, within OHPLBJKB_00721at 739.239 kb on - strand, within OHPLBJKB_00721at 739.239 kb on - strand, within OHPLBJKB_00721at 739.243 kb on + strand, within OHPLBJKB_00721at 739.243 kb on + strand, within OHPLBJKB_00721at 739.243 kb on + strand, within OHPLBJKB_00721at 739.243 kb on + strand, within OHPLBJKB_00721at 739.243 kb on + strand, within OHPLBJKB_00721at 739.243 kb on + strand, within OHPLBJKB_00721at 739.243 kb on + strand, within OHPLBJKB_00721at 739.243 kb on + strand, within OHPLBJKB_00721at 739.243 kb on + strand, within OHPLBJKB_00721at 739.244 kb on - strand, within OHPLBJKB_00721at 739.244 kb on - strand, within OHPLBJKB_00721at 739.244 kb on - strand, within OHPLBJKB_00721at 739.244 kb on - strand, within OHPLBJKB_00721at 739.244 kb on - strand, within OHPLBJKB_00721at 739.244 kb on - strand, within OHPLBJKB_00721at 739.244 kb on - strand, within OHPLBJKB_00721at 739.317 kb on - strand, within OHPLBJKB_00721at 739.373 kb on - strand, within OHPLBJKB_00721at 739.376 kb on + strand, within OHPLBJKB_00721at 739.377 kb on - strand, within OHPLBJKB_00721at 739.443 kb on + strand, within OHPLBJKB_00721at 739.457 kb on - strand, within OHPLBJKB_00721at 739.534 kb on + strand, within OHPLBJKB_00721at 739.620 kb on - strand, within OHPLBJKB_00721at 739.636 kb on + strand, within OHPLBJKB_00721at 739.637 kb on - strand, within OHPLBJKB_00721at 739.637 kb on - strand, within OHPLBJKB_00721at 739.640 kb on + strand, within OHPLBJKB_00721at 739.640 kb on + strand, within OHPLBJKB_00721at 739.641 kb on - strand, within OHPLBJKB_00721at 739.709 kb on + strandat 739.728 kb on + strandat 739.742 kb on + strandat 739.742 kb on + strandat 739.774 kb on + strandat 739.779 kb on - strandat 739.786 kb on - strandat 739.795 kb on - strandat 739.818 kb on - strand, within OHPLBJKB_00722at 739.829 kb on + strand, within OHPLBJKB_00722at 739.865 kb on - strand, within OHPLBJKB_00722at 739.867 kb on + strand, within OHPLBJKB_00722at 739.904 kb on + strand, within OHPLBJKB_00722at 740.013 kb on + strand, within OHPLBJKB_00722at 740.013 kb on + strand, within OHPLBJKB_00722at 740.013 kb on + strand, within OHPLBJKB_00722at 740.021 kb on + strandat 740.024 kb on + strandat 740.061 kb on + strandat 740.129 kb on + strandat 740.141 kb on + strandat 740.176 kb on - strand, within OHPLBJKB_00723at 740.204 kb on + strand, within OHPLBJKB_00723at 740.204 kb on + strand, within OHPLBJKB_00723at 740.205 kb on - strand, within OHPLBJKB_00723at 740.276 kb on + strand, within OHPLBJKB_00723at 740.276 kb on + strand, within OHPLBJKB_00723at 740.325 kb on + strand, within OHPLBJKB_00723at 740.325 kb on + strand, within OHPLBJKB_00723at 740.326 kb on - strand, within OHPLBJKB_00723at 740.364 kb on + strand, within OHPLBJKB_00723at 740.365 kb on - strand, within OHPLBJKB_00723at 740.365 kb on - strand, within OHPLBJKB_00723at 740.371 kb on + strand, within OHPLBJKB_00723at 740.371 kb on + strand, within OHPLBJKB_00723at 740.371 kb on + strand, within OHPLBJKB_00723at 740.371 kb on + strand, within OHPLBJKB_00723at 740.372 kb on - strand, within OHPLBJKB_00723at 740.385 kb on + strand, within OHPLBJKB_00723at 740.457 kb on - strand, within OHPLBJKB_00723at 740.457 kb on - strand, within OHPLBJKB_00723at 740.536 kb on + strand, within OHPLBJKB_00723at 740.536 kb on + strand, within OHPLBJKB_00723at 740.536 kb on + strand, within OHPLBJKB_00723at 740.536 kb on + strand, within OHPLBJKB_00723at 740.568 kb on - strand, within OHPLBJKB_00723at 740.663 kb on + strand, within OHPLBJKB_00723at 740.663 kb on + strand, within OHPLBJKB_00723at 740.663 kb on + strand, within OHPLBJKB_00723

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Per-strain Table

Position Strand Gene LocusTag Fraction iri MOI1
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737,949 + OHPLBJKB_00720 0.41 +1.4
737,949 + OHPLBJKB_00720 0.41 +0.4
737,950 - OHPLBJKB_00720 0.41 -0.1
738,064 + OHPLBJKB_00720 0.52 -0.1
738,070 + OHPLBJKB_00720 0.52 -0.1
738,070 + OHPLBJKB_00720 0.52 +0.3
738,070 + OHPLBJKB_00720 0.52 -0.0
738,070 + OHPLBJKB_00720 0.52 -0.6
738,071 - OHPLBJKB_00720 0.52 -1.3
738,071 - OHPLBJKB_00720 0.52 -0.5
738,071 - OHPLBJKB_00720 0.52 -0.4
738,071 - OHPLBJKB_00720 0.52 -0.5
738,091 - OHPLBJKB_00720 0.54 +0.6
738,171 + OHPLBJKB_00720 0.62 -0.9
738,172 - OHPLBJKB_00720 0.62 -0.0
738,218 + OHPLBJKB_00720 0.66 +0.2
738,234 + OHPLBJKB_00720 0.67 -1.8
738,234 + OHPLBJKB_00720 0.67 -0.4
738,256 - OHPLBJKB_00720 0.69 +0.3
738,262 + OHPLBJKB_00720 0.70 +0.0
738,262 + OHPLBJKB_00720 0.70 -0.7
738,262 + OHPLBJKB_00720 0.70 -0.2
738,263 - OHPLBJKB_00720 0.70 +1.6
738,263 - OHPLBJKB_00720 0.70 +0.4
738,263 - OHPLBJKB_00720 0.70 -0.2
738,263 - OHPLBJKB_00720 0.70 -1.0
738,263 - OHPLBJKB_00720 0.70 +0.8
738,271 + OHPLBJKB_00720 0.71 -0.1
738,272 - OHPLBJKB_00720 0.71 -0.7
738,444 - OHPLBJKB_00720 0.87 +0.7
738,488 + +0.1
738,488 + -0.1
738,489 - +0.5
738,489 - -1.3
738,562 + +0.3
738,562 + +0.6
738,563 - -0.3
738,568 + -0.2
738,568 + +0.5
738,569 - +0.6
738,583 + +0.7
738,584 - -1.4
738,687 + -0.6
738,687 + -0.2
738,748 + OHPLBJKB_00721 0.11 -0.2
738,748 + OHPLBJKB_00721 0.11 +0.3
738,748 + OHPLBJKB_00721 0.11 +0.1
738,749 - OHPLBJKB_00721 0.11 +0.6
738,749 - OHPLBJKB_00721 0.11 -0.9
738,764 + OHPLBJKB_00721 0.12 +1.0
738,765 - OHPLBJKB_00721 0.12 +1.0
738,783 + OHPLBJKB_00721 0.14 -0.6
738,784 - OHPLBJKB_00721 0.14 +0.5
738,807 + OHPLBJKB_00721 0.16 +0.0
738,830 + OHPLBJKB_00721 0.18 -0.2
738,830 + OHPLBJKB_00721 0.18 +0.2
738,830 + OHPLBJKB_00721 0.18 +0.6
738,831 - OHPLBJKB_00721 0.18 +0.8
738,831 - OHPLBJKB_00721 0.18 -0.7
738,840 + OHPLBJKB_00721 0.19 -1.2
738,841 - OHPLBJKB_00721 0.19 +0.5
738,841 - OHPLBJKB_00721 0.19 +0.5
739,082 + OHPLBJKB_00721 0.39 +0.6
739,085 + OHPLBJKB_00721 0.40 -0.1
739,238 + OHPLBJKB_00721 0.53 -1.0
739,238 + OHPLBJKB_00721 0.53 +0.8
739,238 + OHPLBJKB_00721 0.53 -1.4
739,239 - OHPLBJKB_00721 0.53 -0.6
739,239 - OHPLBJKB_00721 0.53 +0.8
739,243 + OHPLBJKB_00721 0.53 -1.3
739,243 + OHPLBJKB_00721 0.53 -0.9
739,243 + OHPLBJKB_00721 0.53 -0.7
739,243 + OHPLBJKB_00721 0.53 +0.3
739,243 + OHPLBJKB_00721 0.53 -0.2
739,243 + OHPLBJKB_00721 0.53 -0.6
739,243 + OHPLBJKB_00721 0.53 +0.4
739,243 + OHPLBJKB_00721 0.53 +0.4
739,243 + OHPLBJKB_00721 0.53 -0.7
739,244 - OHPLBJKB_00721 0.53 -0.8
739,244 - OHPLBJKB_00721 0.53 -0.4
739,244 - OHPLBJKB_00721 0.53 +0.3
739,244 - OHPLBJKB_00721 0.53 +0.2
739,244 - OHPLBJKB_00721 0.53 -0.2
739,244 - OHPLBJKB_00721 0.53 -0.0
739,244 - OHPLBJKB_00721 0.53 -2.5
739,317 - OHPLBJKB_00721 0.59 -1.5
739,373 - OHPLBJKB_00721 0.64 -0.6
739,376 + OHPLBJKB_00721 0.64 +0.2
739,377 - OHPLBJKB_00721 0.64 +0.7
739,443 + OHPLBJKB_00721 0.70 +0.4
739,457 - OHPLBJKB_00721 0.71 +1.0
739,534 + OHPLBJKB_00721 0.78 +0.5
739,620 - OHPLBJKB_00721 0.85 +0.5
739,636 + OHPLBJKB_00721 0.87 -1.4
739,637 - OHPLBJKB_00721 0.87 +0.5
739,637 - OHPLBJKB_00721 0.87 +0.4
739,640 + OHPLBJKB_00721 0.87 +0.4
739,640 + OHPLBJKB_00721 0.87 +0.8
739,641 - OHPLBJKB_00721 0.87 +0.2
739,709 + -1.6
739,728 + +0.4
739,742 + +0.0
739,742 + +1.4
739,774 + -1.5
739,779 - -1.3
739,786 - -0.6
739,795 - +0.4
739,818 - OHPLBJKB_00722 0.10 -0.1
739,829 + OHPLBJKB_00722 0.14 -0.1
739,865 - OHPLBJKB_00722 0.29 +0.8
739,867 + OHPLBJKB_00722 0.30 +1.3
739,904 + OHPLBJKB_00722 0.45 -0.3
740,013 + OHPLBJKB_00722 0.88 +0.1
740,013 + OHPLBJKB_00722 0.88 +0.4
740,013 + OHPLBJKB_00722 0.88 -0.2
740,021 + +1.3
740,024 + +1.4
740,061 + -1.3
740,129 + -0.6
740,141 + +0.8
740,176 - OHPLBJKB_00723 0.11 -0.6
740,204 + OHPLBJKB_00723 0.14 -0.3
740,204 + OHPLBJKB_00723 0.14 +0.1
740,205 - OHPLBJKB_00723 0.14 -0.3
740,276 + OHPLBJKB_00723 0.22 +0.9
740,276 + OHPLBJKB_00723 0.22 -0.7
740,325 + OHPLBJKB_00723 0.28 +0.8
740,325 + OHPLBJKB_00723 0.28 +1.0
740,326 - OHPLBJKB_00723 0.28 +0.8
740,364 + OHPLBJKB_00723 0.32 -0.1
740,365 - OHPLBJKB_00723 0.32 -1.1
740,365 - OHPLBJKB_00723 0.32 -0.4
740,371 + OHPLBJKB_00723 0.33 -1.4
740,371 + OHPLBJKB_00723 0.33 -0.4
740,371 + OHPLBJKB_00723 0.33 -0.0
740,371 + OHPLBJKB_00723 0.33 +0.2
740,372 - OHPLBJKB_00723 0.33 +0.7
740,385 + OHPLBJKB_00723 0.34 +0.7
740,457 - OHPLBJKB_00723 0.42 +0.1
740,457 - OHPLBJKB_00723 0.42 -0.8
740,536 + OHPLBJKB_00723 0.51 +0.6
740,536 + OHPLBJKB_00723 0.51 +0.5
740,536 + OHPLBJKB_00723 0.51 +0.7
740,536 + OHPLBJKB_00723 0.51 -0.9
740,568 - OHPLBJKB_00723 0.54 -0.1
740,663 + OHPLBJKB_00723 0.64 +1.3
740,663 + OHPLBJKB_00723 0.64 +1.5
740,663 + OHPLBJKB_00723 0.64 +0.2

Or see this region's nucleotide sequence