Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00573

Experiment: iri MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00572 and OHPLBJKB_00573 are separated by 54 nucleotidesOHPLBJKB_00573 and OHPLBJKB_00574 overlap by 1 nucleotidesOHPLBJKB_00574 and OHPLBJKB_00575 are separated by 148 nucleotides OHPLBJKB_00572: OHPLBJKB_00572 - Glucitol operon repressor, at 583,616 to 584,425 _00572 OHPLBJKB_00573: OHPLBJKB_00573 - Ribonuclease toxin YhaV, at 584,480 to 584,944 _00573 OHPLBJKB_00574: OHPLBJKB_00574 - Antitoxin PrlF, at 584,944 to 585,279 _00574 OHPLBJKB_00575: OHPLBJKB_00575 - Galactarate dehydratase (L-threo-forming), at 585,428 to 586,999 _00575 Position (kb) 584 585Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 583.518 kb on - strandat 583.518 kb on - strandat 583.518 kb on - strandat 583.558 kb on + strandat 583.559 kb on - strandat 583.613 kb on - strandat 583.613 kb on - strandat 583.613 kb on - strandat 583.615 kb on + strandat 583.615 kb on + strandat 583.616 kb on - strandat 583.622 kb on - strandat 583.736 kb on + strand, within OHPLBJKB_00572at 583.736 kb on + strand, within OHPLBJKB_00572at 583.737 kb on - strand, within OHPLBJKB_00572at 583.737 kb on - strand, within OHPLBJKB_00572at 583.737 kb on - strand, within OHPLBJKB_00572at 583.743 kb on + strand, within OHPLBJKB_00572at 583.744 kb on - strand, within OHPLBJKB_00572at 583.747 kb on + strand, within OHPLBJKB_00572at 583.747 kb on + strand, within OHPLBJKB_00572at 583.748 kb on - strand, within OHPLBJKB_00572at 583.748 kb on - strand, within OHPLBJKB_00572at 583.748 kb on - strand, within OHPLBJKB_00572at 583.748 kb on - strand, within OHPLBJKB_00572at 583.808 kb on + strand, within OHPLBJKB_00572at 583.809 kb on - strand, within OHPLBJKB_00572at 583.867 kb on + strand, within OHPLBJKB_00572at 584.007 kb on + strand, within OHPLBJKB_00572at 584.008 kb on - strand, within OHPLBJKB_00572at 584.008 kb on - strand, within OHPLBJKB_00572at 584.115 kb on - strand, within OHPLBJKB_00572at 584.175 kb on + strand, within OHPLBJKB_00572at 584.176 kb on - strand, within OHPLBJKB_00572at 584.213 kb on - strand, within OHPLBJKB_00572at 584.287 kb on + strand, within OHPLBJKB_00572at 584.307 kb on + strand, within OHPLBJKB_00572at 584.307 kb on + strand, within OHPLBJKB_00572at 584.308 kb on - strand, within OHPLBJKB_00572at 584.311 kb on + strand, within OHPLBJKB_00572at 584.311 kb on + strand, within OHPLBJKB_00572at 584.311 kb on + strand, within OHPLBJKB_00572at 584.454 kb on - strandat 584.454 kb on - strandat 584.551 kb on + strand, within OHPLBJKB_00573at 584.558 kb on + strand, within OHPLBJKB_00573at 584.559 kb on - strand, within OHPLBJKB_00573at 584.565 kb on + strand, within OHPLBJKB_00573at 584.565 kb on + strand, within OHPLBJKB_00573at 584.565 kb on + strand, within OHPLBJKB_00573at 584.565 kb on + strand, within OHPLBJKB_00573at 584.565 kb on + strand, within OHPLBJKB_00573at 584.566 kb on - strand, within OHPLBJKB_00573at 584.582 kb on - strand, within OHPLBJKB_00573at 584.586 kb on + strand, within OHPLBJKB_00573at 584.587 kb on - strand, within OHPLBJKB_00573at 584.649 kb on + strand, within OHPLBJKB_00573at 584.704 kb on + strand, within OHPLBJKB_00573at 584.768 kb on - strand, within OHPLBJKB_00573at 584.786 kb on - strand, within OHPLBJKB_00573at 584.786 kb on - strand, within OHPLBJKB_00573at 584.826 kb on + strand, within OHPLBJKB_00573at 584.870 kb on + strand, within OHPLBJKB_00573at 584.871 kb on - strand, within OHPLBJKB_00573at 584.880 kb on + strand, within OHPLBJKB_00573at 584.881 kb on - strand, within OHPLBJKB_00573at 584.907 kb on + strandat 584.907 kb on + strandat 584.907 kb on + strandat 584.908 kb on - strandat 584.908 kb on - strandat 584.908 kb on - strandat 584.908 kb on - strandat 584.908 kb on - strandat 584.909 kb on + strandat 584.909 kb on + strandat 584.909 kb on + strandat 584.910 kb on - strandat 585.084 kb on + strand, within OHPLBJKB_00574at 585.084 kb on + strand, within OHPLBJKB_00574at 585.084 kb on + strand, within OHPLBJKB_00574at 585.084 kb on + strand, within OHPLBJKB_00574at 585.084 kb on + strand, within OHPLBJKB_00574at 585.084 kb on + strand, within OHPLBJKB_00574at 585.084 kb on + strand, within OHPLBJKB_00574at 585.084 kb on + strand, within OHPLBJKB_00574at 585.084 kb on + strand, within OHPLBJKB_00574at 585.085 kb on - strand, within OHPLBJKB_00574at 585.085 kb on - strand, within OHPLBJKB_00574at 585.085 kb on - strand, within OHPLBJKB_00574at 585.085 kb on - strand, within OHPLBJKB_00574at 585.085 kb on - strand, within OHPLBJKB_00574at 585.087 kb on + strand, within OHPLBJKB_00574at 585.087 kb on + strand, within OHPLBJKB_00574at 585.087 kb on + strand, within OHPLBJKB_00574at 585.088 kb on - strand, within OHPLBJKB_00574at 585.120 kb on + strand, within OHPLBJKB_00574at 585.120 kb on + strand, within OHPLBJKB_00574at 585.121 kb on - strand, within OHPLBJKB_00574at 585.121 kb on - strand, within OHPLBJKB_00574at 585.208 kb on - strand, within OHPLBJKB_00574at 585.208 kb on - strand, within OHPLBJKB_00574at 585.250 kb on + strandat 585.251 kb on - strandat 585.296 kb on - strandat 585.371 kb on + strandat 585.392 kb on + strandat 585.557 kb on - strandat 585.557 kb on - strandat 585.589 kb on + strand, within OHPLBJKB_00575at 585.644 kb on - strand, within OHPLBJKB_00575at 585.766 kb on - strand, within OHPLBJKB_00575at 585.782 kb on - strand, within OHPLBJKB_00575at 585.836 kb on - strand, within OHPLBJKB_00575at 585.836 kb on - strand, within OHPLBJKB_00575at 585.937 kb on - strand, within OHPLBJKB_00575at 585.937 kb on - strand, within OHPLBJKB_00575at 585.937 kb on - strand, within OHPLBJKB_00575at 585.937 kb on - strand, within OHPLBJKB_00575at 585.937 kb on - strand, within OHPLBJKB_00575at 585.937 kb on - strand, within OHPLBJKB_00575at 585.940 kb on + strand, within OHPLBJKB_00575at 585.941 kb on - strand, within OHPLBJKB_00575

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Per-strain Table

Position Strand Gene LocusTag Fraction iri MOI1
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583,518 - -0.1
583,518 - -1.1
583,518 - +1.4
583,558 + +0.1
583,559 - +0.3
583,613 - +0.5
583,613 - -1.2
583,613 - +0.2
583,615 + -0.1
583,615 + -0.6
583,616 - +0.1
583,622 - +1.7
583,736 + OHPLBJKB_00572 0.15 +0.5
583,736 + OHPLBJKB_00572 0.15 +0.0
583,737 - OHPLBJKB_00572 0.15 -0.5
583,737 - OHPLBJKB_00572 0.15 -0.8
583,737 - OHPLBJKB_00572 0.15 -1.4
583,743 + OHPLBJKB_00572 0.16 -0.0
583,744 - OHPLBJKB_00572 0.16 -0.3
583,747 + OHPLBJKB_00572 0.16 -1.1
583,747 + OHPLBJKB_00572 0.16 -0.3
583,748 - OHPLBJKB_00572 0.16 -1.4
583,748 - OHPLBJKB_00572 0.16 +4.9
583,748 - OHPLBJKB_00572 0.16 -0.4
583,748 - OHPLBJKB_00572 0.16 +0.3
583,808 + OHPLBJKB_00572 0.24 +0.1
583,809 - OHPLBJKB_00572 0.24 -0.9
583,867 + OHPLBJKB_00572 0.31 -0.2
584,007 + OHPLBJKB_00572 0.48 -1.0
584,008 - OHPLBJKB_00572 0.48 +0.5
584,008 - OHPLBJKB_00572 0.48 +0.2
584,115 - OHPLBJKB_00572 0.62 +1.4
584,175 + OHPLBJKB_00572 0.69 +2.1
584,176 - OHPLBJKB_00572 0.69 +0.4
584,213 - OHPLBJKB_00572 0.74 -1.3
584,287 + OHPLBJKB_00572 0.83 +0.7
584,307 + OHPLBJKB_00572 0.85 -2.1
584,307 + OHPLBJKB_00572 0.85 -1.7
584,308 - OHPLBJKB_00572 0.85 -0.2
584,311 + OHPLBJKB_00572 0.86 -0.3
584,311 + OHPLBJKB_00572 0.86 +0.4
584,311 + OHPLBJKB_00572 0.86 -1.3
584,454 - -0.0
584,454 - +0.2
584,551 + OHPLBJKB_00573 0.15 +0.1
584,558 + OHPLBJKB_00573 0.17 -0.0
584,559 - OHPLBJKB_00573 0.17 +0.3
584,565 + OHPLBJKB_00573 0.18 +0.8
584,565 + OHPLBJKB_00573 0.18 +0.2
584,565 + OHPLBJKB_00573 0.18 +0.6
584,565 + OHPLBJKB_00573 0.18 -0.4
584,565 + OHPLBJKB_00573 0.18 +0.0
584,566 - OHPLBJKB_00573 0.18 +0.5
584,582 - OHPLBJKB_00573 0.22 +0.4
584,586 + OHPLBJKB_00573 0.23 +1.7
584,587 - OHPLBJKB_00573 0.23 -1.3
584,649 + OHPLBJKB_00573 0.36 -0.9
584,704 + OHPLBJKB_00573 0.48 -0.5
584,768 - OHPLBJKB_00573 0.62 +0.0
584,786 - OHPLBJKB_00573 0.66 -0.3
584,786 - OHPLBJKB_00573 0.66 +0.1
584,826 + OHPLBJKB_00573 0.74 +0.9
584,870 + OHPLBJKB_00573 0.84 -0.5
584,871 - OHPLBJKB_00573 0.84 +0.1
584,880 + OHPLBJKB_00573 0.86 -0.5
584,881 - OHPLBJKB_00573 0.86 -0.2
584,907 + -0.7
584,907 + -3.0
584,907 + -2.1
584,908 - -0.2
584,908 - +0.7
584,908 - +0.1
584,908 - +0.1
584,908 - -1.0
584,909 + -0.3
584,909 + +0.6
584,909 + +0.0
584,910 - +0.0
585,084 + OHPLBJKB_00574 0.42 -0.4
585,084 + OHPLBJKB_00574 0.42 +0.8
585,084 + OHPLBJKB_00574 0.42 +0.5
585,084 + OHPLBJKB_00574 0.42 -1.1
585,084 + OHPLBJKB_00574 0.42 -0.5
585,084 + OHPLBJKB_00574 0.42 -2.1
585,084 + OHPLBJKB_00574 0.42 -1.5
585,084 + OHPLBJKB_00574 0.42 -1.3
585,084 + OHPLBJKB_00574 0.42 +0.4
585,085 - OHPLBJKB_00574 0.42 -0.9
585,085 - OHPLBJKB_00574 0.42 -1.6
585,085 - OHPLBJKB_00574 0.42 -0.8
585,085 - OHPLBJKB_00574 0.42 -1.3
585,085 - OHPLBJKB_00574 0.42 -0.2
585,087 + OHPLBJKB_00574 0.43 +0.2
585,087 + OHPLBJKB_00574 0.43 +0.8
585,087 + OHPLBJKB_00574 0.43 +0.7
585,088 - OHPLBJKB_00574 0.43 -1.2
585,120 + OHPLBJKB_00574 0.52 +0.5
585,120 + OHPLBJKB_00574 0.52 -0.6
585,121 - OHPLBJKB_00574 0.53 +0.0
585,121 - OHPLBJKB_00574 0.53 +1.1
585,208 - OHPLBJKB_00574 0.79 +0.7
585,208 - OHPLBJKB_00574 0.79 -1.2
585,250 + -0.0
585,251 - -0.5
585,296 - +2.1
585,371 + +0.0
585,392 + +0.2
585,557 - -0.9
585,557 - -0.5
585,589 + OHPLBJKB_00575 0.10 +0.7
585,644 - OHPLBJKB_00575 0.14 +0.2
585,766 - OHPLBJKB_00575 0.22 -0.2
585,782 - OHPLBJKB_00575 0.23 -0.8
585,836 - OHPLBJKB_00575 0.26 +0.8
585,836 - OHPLBJKB_00575 0.26 +0.1
585,937 - OHPLBJKB_00575 0.32 +0.9
585,937 - OHPLBJKB_00575 0.32 -0.9
585,937 - OHPLBJKB_00575 0.32 +0.6
585,937 - OHPLBJKB_00575 0.32 -1.0
585,937 - OHPLBJKB_00575 0.32 +0.9
585,937 - OHPLBJKB_00575 0.32 +0.8
585,940 + OHPLBJKB_00575 0.33 +0.9
585,941 - OHPLBJKB_00575 0.33 -0.8

Or see this region's nucleotide sequence