Strain Fitness in Escherichia fergusonii Becca around EFB2_04724

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,973,308	+				+1.8
4,973,309	-				+0.1
4,973,356	+				-0.4
4,973,356	+				-0.9
4,973,356	+				+1.3
4,973,356	+				-1.2
4,973,357	-				-0.7
4,973,357	-				-2.0
4,973,357	-				+0.4
4,973,357	-				+0.0
4,973,387	+				+0.6
4,973,387	+				-1.2
4,973,388	-				+0.8
4,973,388	-				-0.4
4,973,401	+				-2.1
4,973,401	+				+0.4
4,973,401	+				+1.0
4,973,401	+				+1.0
4,973,401	+				-0.4
4,973,401	+				+0.2
4,973,401	+				-0.3
4,973,401	+				+0.7
4,973,401	+				+0.5
4,973,401	+				+1.1
4,973,401	+				-0.1
4,973,401	+				+0.3
4,973,401	+				-0.8
4,973,401	+				-0.3
4,973,401	+				+0.3
4,973,401	+				+5.4
4,973,401	+				+0.0
4,973,401	+				-0.1
4,973,401	+				+0.0
4,973,401	+				+0.2
4,973,401	+				-0.7
4,973,401	+				+0.4
4,973,401	+				+0.4
4,973,401	+				-2.1
4,973,401	+				-0.2
4,973,401	+				-0.8
4,973,401	+				+0.9
4,973,401	+				-3.2
4,973,401	+				+0.0
4,973,401	+				-1.0
4,973,401	+				-0.5
4,973,401	+				-0.8
4,973,401	+				+0.8
4,973,402	-				+0.7
4,973,402	-				+1.1
4,973,402	-				+0.7
4,973,402	-				-0.3
4,973,402	-				-0.7
4,973,402	-				-1.5
4,973,402	-				+0.8
4,973,402	-				-1.4
4,973,402	-				-0.4
4,973,402	-				-1.8
4,973,402	-				+2.3
4,973,402	-				+1.3
4,973,402	-				+0.1
4,973,402	-				+0.7
4,973,402	-				-2.0
4,973,402	-				-0.7
4,973,402	-				+1.2
4,973,402	-				-0.8
4,973,402	-				+1.4
4,973,402	-				-1.7
4,973,402	-				+1.9
4,973,402	-				+0.3
4,973,402	-				-0.6
4,973,402	-				+0.9
4,973,403	-				-1.3
4,973,422	+				+0.3
4,973,422	+				-1.5
4,973,422	+				-0.0
4,973,423	-				+1.3
4,973,423	-				-3.2
4,973,423	-				+0.6
4,973,423	-				-0.2
4,973,528	-		EFB2_04723	0.14	-2.5
4,973,528	-		EFB2_04723	0.14	-2.2
4,973,528	-		EFB2_04723	0.14	+0.1
4,973,584	+		EFB2_04723	0.20	+0.3
4,973,585	-		EFB2_04723	0.20	+0.1
4,973,585	-		EFB2_04723	0.20	+0.6
4,973,585	-		EFB2_04723	0.20	-0.8
4,973,585	-		EFB2_04723	0.20	+2.4
4,973,585	-		EFB2_04723	0.20	+1.0
4,973,597	+		EFB2_04723	0.22	-1.4
4,973,597	+		EFB2_04723	0.22	+1.0
4,973,597	+		EFB2_04723	0.22	+0.1
4,973,597	+		EFB2_04723	0.22	-2.0
4,973,598	-		EFB2_04723	0.22	-0.4
4,973,598	-		EFB2_04723	0.22	+0.4
4,973,598	-		EFB2_04723	0.22	-0.1
4,973,616	+		EFB2_04723	0.24	-0.4
4,973,616	+		EFB2_04723	0.24	+0.2
4,973,616	+		EFB2_04723	0.24	+0.4
4,973,616	+		EFB2_04723	0.24	+0.6
4,973,616	+		EFB2_04723	0.24	+2.2
4,973,616	+		EFB2_04723	0.24	+0.5
4,973,616	+		EFB2_04723	0.24	+0.5
4,973,616	+		EFB2_04723	0.24	-0.6
4,973,617	-		EFB2_04723	0.24	-0.1
4,973,617	-		EFB2_04723	0.24	+0.2
4,973,617	-		EFB2_04723	0.24	+0.4
4,973,617	-		EFB2_04723	0.24	+0.7
4,973,617	-		EFB2_04723	0.24	+0.9
4,973,617	-		EFB2_04723	0.24	-1.3
4,973,617	-		EFB2_04723	0.24	-0.2
4,973,617	-		EFB2_04723	0.24	+0.3
4,973,617	-		EFB2_04723	0.24	-0.6
4,973,617	-		EFB2_04723	0.24	-1.5
4,973,701	+		EFB2_04723	0.33	+0.4
4,973,701	+		EFB2_04723	0.33	-0.3
4,973,701	+		EFB2_04723	0.33	-0.3
4,973,701	+		EFB2_04723	0.33	-0.2
4,973,701	+		EFB2_04723	0.33	-0.4
4,973,701	+		EFB2_04723	0.33	-0.8
4,973,701	+		EFB2_04723	0.33	+0.0
4,973,702	-		EFB2_04723	0.33	+0.6
4,973,702	-		EFB2_04723	0.33	-1.6
4,973,702	-		EFB2_04723	0.33	+1.0
4,973,702	-		EFB2_04723	0.33	-0.4
4,973,702	-		EFB2_04723	0.33	+1.1
4,973,702	-		EFB2_04723	0.33	+1.5
4,973,702	-		EFB2_04723	0.33	-1.1
4,973,702	-		EFB2_04723	0.33	-1.4
4,973,702	-		EFB2_04723	0.33	+1.2
4,973,755	+		EFB2_04723	0.39	+0.2
4,973,755	+		EFB2_04723	0.39	-0.2
4,973,755	+		EFB2_04723	0.39	+0.3
4,973,755	+		EFB2_04723	0.39	+0.6
4,973,755	+		EFB2_04723	0.39	+0.2
4,973,756	-		EFB2_04723	0.39	-0.5
4,973,756	-		EFB2_04723	0.39	+0.8
4,973,756	-		EFB2_04723	0.39	-0.9
4,973,756	-		EFB2_04723	0.39	+0.6
4,973,762	+		EFB2_04723	0.40	-1.1
4,973,762	+		EFB2_04723	0.40	-0.0
4,973,762	+		EFB2_04723	0.40	-0.6
4,973,762	+		EFB2_04723	0.40	+0.2
4,973,763	-		EFB2_04723	0.40	+0.3
4,973,763	-		EFB2_04723	0.40	-0.1
4,973,763	-		EFB2_04723	0.40	-0.9
4,973,763	-		EFB2_04723	0.40	+0.5
4,973,873	+		EFB2_04723	0.52	-2.5
4,973,874	-		EFB2_04723	0.52	+0.4
4,973,881	+		EFB2_04723	0.53	-1.9
4,973,881	+		EFB2_04723	0.53	+0.8
4,973,881	+		EFB2_04723	0.53	-1.1
4,973,881	+		EFB2_04723	0.53	-0.4
4,973,881	+		EFB2_04723	0.53	-1.4
4,973,881	+		EFB2_04723	0.53	-0.4
4,973,881	+		EFB2_04723	0.53	+0.2
4,973,881	+		EFB2_04723	0.53	-3.4
4,973,881	+		EFB2_04723	0.53	-0.9
4,973,881	+		EFB2_04723	0.53	-0.6
4,973,881	+		EFB2_04723	0.53	-0.0
4,973,881	+		EFB2_04723	0.53	+0.2
4,973,881	+		EFB2_04723	0.53	+2.0
4,973,881	+		EFB2_04723	0.53	-0.6
4,973,882	-		EFB2_04723	0.53	-1.1
4,973,882	-		EFB2_04723	0.53	+1.6
4,973,882	-		EFB2_04723	0.53	+0.4
4,973,882	-		EFB2_04723	0.53	+1.1
4,973,882	-		EFB2_04723	0.53	+2.1
4,973,882	-		EFB2_04723	0.53	+1.8
4,973,882	-		EFB2_04723	0.53	-0.2
4,973,882	-		EFB2_04723	0.53	-0.0
4,973,882	-		EFB2_04723	0.53	-3.7
4,973,882	-		EFB2_04723	0.53	-0.2
4,973,882	-		EFB2_04723	0.53	-0.1
4,973,882	-		EFB2_04723	0.53	+1.3
4,973,882	-		EFB2_04723	0.53	-0.8
4,973,882	-		EFB2_04723	0.53	+0.4
4,973,882	-		EFB2_04723	0.53	-2.0
4,973,882	-		EFB2_04723	0.53	-0.4
4,973,882	-		EFB2_04723	0.53	-0.8
4,973,882	-		EFB2_04723	0.53	-1.3
4,973,882	-		EFB2_04723	0.53	+0.6
4,973,882	-		EFB2_04723	0.53	+0.8
4,974,041	+		EFB2_04723	0.71	+2.0
4,974,041	+		EFB2_04723	0.71	+0.1
4,974,041	+		EFB2_04723	0.71	+0.1
4,974,041	+		EFB2_04723	0.71	+0.0
4,974,042	-		EFB2_04723	0.71	+0.8
4,974,042	-		EFB2_04723	0.71	+0.3
4,974,064	+		EFB2_04723	0.73	-0.1
4,974,064	+		EFB2_04723	0.73	-1.5
4,974,064	+		EFB2_04723	0.73	-0.1
4,974,064	+		EFB2_04723	0.73	-0.4
4,974,064	+		EFB2_04723	0.73	-0.1
4,974,065	-		EFB2_04723	0.73	-0.7
4,974,065	-		EFB2_04723	0.73	+1.4
4,974,065	-		EFB2_04723	0.73	-3.3
4,974,073	+		EFB2_04723	0.74	+2.0
4,974,073	+		EFB2_04723	0.74	-1.1
4,974,073	+		EFB2_04723	0.74	+0.8
4,974,073	+		EFB2_04723	0.74	-1.8
4,974,073	+		EFB2_04723	0.74	+0.7
4,974,073	+		EFB2_04723	0.74	+0.1
4,974,073	+		EFB2_04723	0.74	-0.7
4,974,073	+		EFB2_04723	0.74	+0.0
4,974,073	+		EFB2_04723	0.74	-1.0
4,974,073	+		EFB2_04723	0.74	-1.5
4,974,073	+		EFB2_04723	0.74	-0.7
4,974,073	+		EFB2_04723	0.74	+0.4
4,974,073	+		EFB2_04723	0.74	+0.4
4,974,073	+		EFB2_04723	0.74	-0.1
4,974,073	+		EFB2_04723	0.74	-0.6
4,974,073	+		EFB2_04723	0.74	-1.9
4,974,073	+		EFB2_04723	0.74	+0.0
4,974,073	+		EFB2_04723	0.74	+1.6
4,974,073	+		EFB2_04723	0.74	+0.6
4,974,073	+		EFB2_04723	0.74	+0.4
4,974,073	+		EFB2_04723	0.74	+0.6
4,974,073	+		EFB2_04723	0.74	-0.3
4,974,073	+		EFB2_04723	0.74	-2.1
4,974,073	+		EFB2_04723	0.74	-1.8
4,974,073	+		EFB2_04723	0.74	+0.7
4,974,073	+		EFB2_04723	0.74	+0.2
4,974,073	+		EFB2_04723	0.74	-0.2
4,974,073	+		EFB2_04723	0.74	-1.2
4,974,073	+		EFB2_04723	0.74	-1.1
4,974,073	+		EFB2_04723	0.74	-0.9
4,974,073	+		EFB2_04723	0.74	-0.5
4,974,073	+		EFB2_04723	0.74	+0.9
4,974,073	+		EFB2_04723	0.74	-1.9
4,974,073	+		EFB2_04723	0.74	+0.1
4,974,073	+		EFB2_04723	0.74	+1.0
4,974,073	+		EFB2_04723	0.74	-2.5
4,974,073	+		EFB2_04723	0.74	+0.3
4,974,073	+		EFB2_04723	0.74	+2.0
4,974,073	+		EFB2_04723	0.74	+0.9
4,974,073	+		EFB2_04723	0.74	+0.0
4,974,073	+		EFB2_04723	0.74	+0.8
4,974,073	+		EFB2_04723	0.74	-0.8
4,974,073	+		EFB2_04723	0.74	+1.0
4,974,073	+		EFB2_04723	0.74	+1.3
4,974,073	+		EFB2_04723	0.74	+1.0
4,974,073	+		EFB2_04723	0.74	-1.2
4,974,073	+		EFB2_04723	0.74	+5.1
4,974,073	+		EFB2_04723	0.74	+0.2
4,974,073	+		EFB2_04723	0.74	-0.5
4,974,073	+		EFB2_04723	0.74	-0.6
4,974,073	+		EFB2_04723	0.74	+2.5
4,974,073	+		EFB2_04723	0.74	-2.8
4,974,074	-		EFB2_04723	0.74	+1.6
4,974,074	-		EFB2_04723	0.74	+0.4
4,974,074	-		EFB2_04723	0.74	-0.9
4,974,074	-		EFB2_04723	0.74	+0.6
4,974,074	-		EFB2_04723	0.74	-1.4
4,974,074	-		EFB2_04723	0.74	+1.0
4,974,074	-		EFB2_04723	0.74	+1.5
4,974,074	-		EFB2_04723	0.74	+0.2
4,974,074	-		EFB2_04723	0.74	-0.7
4,974,074	-		EFB2_04723	0.74	-1.1
4,974,074	-		EFB2_04723	0.74	+0.2
4,974,074	-		EFB2_04723	0.74	-0.5
4,974,074	-		EFB2_04723	0.74	+0.6
4,974,074	-		EFB2_04723	0.74	-0.2
4,974,074	-		EFB2_04723	0.74	+0.9
4,974,074	-		EFB2_04723	0.74	+1.6
4,974,074	-		EFB2_04723	0.74	-0.0
4,974,074	-		EFB2_04723	0.74	-0.7
4,974,074	-		EFB2_04723	0.74	+0.5
4,974,074	-		EFB2_04723	0.74	+0.7
4,974,074	-		EFB2_04723	0.74	+0.9
4,974,074	-		EFB2_04723	0.74	+0.5
4,974,074	-		EFB2_04723	0.74	+0.6
4,974,074	-		EFB2_04723	0.74	+0.7
4,974,074	-		EFB2_04723	0.74	+1.5
4,974,074	-		EFB2_04723	0.74	+0.0
4,974,074	-		EFB2_04723	0.74	+0.0
4,974,074	-		EFB2_04723	0.74	-0.4
4,974,074	-		EFB2_04723	0.74	-0.4
4,974,074	-		EFB2_04723	0.74	+1.6
4,974,074	-		EFB2_04723	0.74	-0.3
4,974,074	-		EFB2_04723	0.74	+0.5
4,974,074	-		EFB2_04723	0.74	+0.5
4,974,074	-		EFB2_04723	0.74	-0.6
4,974,074	-		EFB2_04723	0.74	+0.5
4,974,074	-		EFB2_04723	0.74	-2.0
4,974,074	-		EFB2_04723	0.74	+0.6
4,974,074	-		EFB2_04723	0.74	+0.9
4,974,074	-		EFB2_04723	0.74	-0.8
4,974,074	-		EFB2_04723	0.74	-2.5
4,974,077	+		EFB2_04723	0.75	-1.0
4,974,077	+		EFB2_04723	0.75	-0.5
4,974,077	+		EFB2_04723	0.75	-0.0
4,974,077	+		EFB2_04723	0.75	+0.0
4,974,077	+		EFB2_04723	0.75	+0.6
4,974,077	+		EFB2_04723	0.75	-0.4
4,974,077	+		EFB2_04723	0.75	-1.0
4,974,077	+		EFB2_04723	0.75	-0.2
4,974,077	+		EFB2_04723	0.75	+3.4
4,974,077	+		EFB2_04723	0.75	-0.0
4,974,077	+		EFB2_04723	0.75	-0.3
4,974,077	+		EFB2_04723	0.75	+0.7
4,974,077	+		EFB2_04723	0.75	-1.3
4,974,077	+		EFB2_04723	0.75	+0.5
4,974,077	+		EFB2_04723	0.75	-1.8
4,974,077	+		EFB2_04723	0.75	+0.5
4,974,077	+		EFB2_04723	0.75	-2.5
4,974,077	+		EFB2_04723	0.75	-0.4
4,974,077	+		EFB2_04723	0.75	+0.2
4,974,077	+		EFB2_04723	0.75	+1.0
4,974,077	+		EFB2_04723	0.75	-0.3
4,974,077	+		EFB2_04723	0.75	-0.3
4,974,078	-		EFB2_04723	0.75	+0.9
4,974,078	-		EFB2_04723	0.75	-3.0
4,974,078	-		EFB2_04723	0.75	+0.3
4,974,078	-		EFB2_04723	0.75	-1.0
4,974,078	-		EFB2_04723	0.75	+0.2
4,974,078	-		EFB2_04723	0.75	+0.6
4,974,078	-		EFB2_04723	0.75	-0.9
4,974,078	-		EFB2_04723	0.75	-0.4
4,974,078	-		EFB2_04723	0.75	-0.4
4,974,078	-		EFB2_04723	0.75	+0.7
4,974,078	-		EFB2_04723	0.75	+0.1
4,974,078	-		EFB2_04723	0.75	-0.4
4,974,078	-		EFB2_04723	0.75	-1.8
4,974,078	-		EFB2_04723	0.75	+1.2
4,974,078	-		EFB2_04723	0.75	-1.9
4,974,078	-		EFB2_04723	0.75	-2.8
4,974,078	-		EFB2_04723	0.75	+0.6
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