Strain Fitness in Escherichia fergusonii Becca around EFB2_04094

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,300,997	+		EFB2_04093	0.66	+0.9
4,300,997	+		EFB2_04093	0.66	+0.7
4,300,997	+		EFB2_04093	0.66	+0.5
4,300,997	+		EFB2_04093	0.66	-0.2
4,300,997	+		EFB2_04093	0.66	-0.8
4,300,997	+		EFB2_04093	0.66	-0.0
4,300,997	+		EFB2_04093	0.66	-1.9
4,300,997	+		EFB2_04093	0.66	-0.0
4,300,997	+		EFB2_04093	0.66	-0.4
4,300,998	-		EFB2_04093	0.66	-1.7
4,300,998	-		EFB2_04093	0.66	+0.4
4,300,998	-		EFB2_04093	0.66	+0.9
4,300,998	-		EFB2_04093	0.66	-1.5
4,300,998	-		EFB2_04093	0.66	-0.5
4,300,998	-		EFB2_04093	0.66	-0.0
4,300,998	-		EFB2_04093	0.66	-0.9
4,301,030	+		EFB2_04093	0.68	-0.1
4,301,030	+		EFB2_04093	0.68	+0.5
4,301,030	+		EFB2_04093	0.68	-1.5
4,301,030	+		EFB2_04093	0.68	-0.3
4,301,030	+		EFB2_04093	0.68	-1.3
4,301,030	+		EFB2_04093	0.68	-0.4
4,301,030	+		EFB2_04093	0.68	+0.1
4,301,030	+		EFB2_04093	0.68	-0.1
4,301,030	+		EFB2_04093	0.68	-0.8
4,301,030	+		EFB2_04093	0.68	-0.0
4,301,030	+		EFB2_04093	0.68	-0.3
4,301,030	+		EFB2_04093	0.68	+0.2
4,301,030	+		EFB2_04093	0.68	-0.6
4,301,031	-		EFB2_04093	0.68	+0.9
4,301,031	-		EFB2_04093	0.68	-1.7
4,301,031	-		EFB2_04093	0.68	+3.0
4,301,031	-		EFB2_04093	0.68	+0.2
4,301,031	-		EFB2_04093	0.68	+0.4
4,301,031	-		EFB2_04093	0.68	-1.2
4,301,031	-		EFB2_04093	0.68	-0.3
4,301,031	-		EFB2_04093	0.68	-1.0
4,301,031	-		EFB2_04093	0.68	-1.0
4,301,031	-		EFB2_04093	0.68	-1.5
4,301,031	-		EFB2_04093	0.68	-0.3
4,301,031	-		EFB2_04093	0.68	-0.5
4,301,031	-		EFB2_04093	0.68	+0.2
4,301,054	+		EFB2_04093	0.69	-2.4
4,301,054	+		EFB2_04093	0.69	+0.1
4,301,054	+		EFB2_04093	0.69	-2.7
4,301,054	+		EFB2_04093	0.69	+0.3
4,301,054	+		EFB2_04093	0.69	+0.2
4,301,054	+		EFB2_04093	0.69	-0.0
4,301,054	+		EFB2_04093	0.69	-0.7
4,301,054	+		EFB2_04093	0.69	-2.5
4,301,054	+		EFB2_04093	0.69	-0.4
4,301,054	+		EFB2_04093	0.69	+0.3
4,301,054	+		EFB2_04093	0.69	-1.9
4,301,054	+		EFB2_04093	0.69	-3.1
4,301,055	-		EFB2_04093	0.69	+0.4
4,301,055	-		EFB2_04093	0.69	+0.2
4,301,055	-		EFB2_04093	0.69	-0.0
4,301,055	-		EFB2_04093	0.69	-0.1
4,301,055	-		EFB2_04093	0.69	+0.2
4,301,055	-		EFB2_04093	0.69	-0.4
4,301,055	-		EFB2_04093	0.69	-1.4
4,301,055	-		EFB2_04093	0.69	-0.9
4,301,055	-		EFB2_04093	0.69	+2.4
4,301,055	-		EFB2_04093	0.69	+0.9
4,301,055	-		EFB2_04093	0.69	-0.8
4,301,055	-		EFB2_04093	0.69	+1.0
4,301,055	-		EFB2_04093	0.69	+0.2
4,301,055	-		EFB2_04093	0.69	+1.2
4,301,055	-		EFB2_04093	0.69	+0.4
4,301,055	-		EFB2_04093	0.69	-0.4
4,301,055	-		EFB2_04093	0.69	+0.5
4,301,055	-		EFB2_04093	0.69	+0.6
4,301,055	-		EFB2_04093	0.69	+0.8
4,301,055	-		EFB2_04093	0.69	-2.1
4,301,063	+		EFB2_04093	0.70	-0.5
4,301,063	+		EFB2_04093	0.70	+0.3
4,301,063	+		EFB2_04093	0.70	+0.2
4,301,063	+		EFB2_04093	0.70	+0.5
4,301,063	+		EFB2_04093	0.70	+0.3
4,301,063	+		EFB2_04093	0.70	+0.9
4,301,063	+		EFB2_04093	0.70	-0.3
4,301,063	+		EFB2_04093	0.70	+0.2
4,301,063	+		EFB2_04093	0.70	+1.3
4,301,063	+		EFB2_04093	0.70	+1.4
4,301,063	+		EFB2_04093	0.70	-1.8
4,301,063	+		EFB2_04093	0.70	+0.1
4,301,063	+		EFB2_04093	0.70	-0.2
4,301,063	+		EFB2_04093	0.70	-0.5
4,301,063	+		EFB2_04093	0.70	+0.3
4,301,063	+		EFB2_04093	0.70	+0.6
4,301,063	+		EFB2_04093	0.70	-3.4
4,301,064	-		EFB2_04093	0.70	-1.5
4,301,064	-		EFB2_04093	0.70	+0.3
4,301,064	-		EFB2_04093	0.70	-2.2
4,301,064	-		EFB2_04093	0.70	-0.1
4,301,064	-		EFB2_04093	0.70	-0.2
4,301,064	-		EFB2_04093	0.70	+0.2
4,301,064	-		EFB2_04093	0.70	-0.3
4,301,064	-		EFB2_04093	0.70	-0.4
4,301,064	-		EFB2_04093	0.70	+0.2
4,301,064	-		EFB2_04093	0.70	-2.8
4,301,064	-		EFB2_04093	0.70	-0.3
4,301,064	-		EFB2_04093	0.70	+0.3
4,301,064	-		EFB2_04093	0.70	+0.5
4,301,064	-		EFB2_04093	0.70	-0.5
4,301,064	-		EFB2_04093	0.70	-0.6
4,301,064	-		EFB2_04093	0.70	+0.1
4,301,064	-		EFB2_04093	0.70	-2.1
4,301,064	-		EFB2_04093	0.70	-0.4
4,301,064	-		EFB2_04093	0.70	-0.3
4,301,064	-		EFB2_04093	0.70	+1.4
4,301,064	-		EFB2_04093	0.70	-2.2
4,301,064	-		EFB2_04093	0.70	+0.2
4,301,064	-		EFB2_04093	0.70	-0.1
4,301,064	-		EFB2_04093	0.70	-0.5
4,301,088	-		EFB2_04093	0.71	+2.1
4,301,088	-		EFB2_04093	0.71	-2.0
4,301,134	+		EFB2_04093	0.74	-0.1
4,301,134	+		EFB2_04093	0.74	+0.4
4,301,134	+		EFB2_04093	0.74	-0.5
4,301,134	+		EFB2_04093	0.74	-1.5
4,301,134	+		EFB2_04093	0.74	+0.3
4,301,134	+		EFB2_04093	0.74	+0.4
4,301,134	+		EFB2_04093	0.74	-2.7
4,301,134	+		EFB2_04093	0.74	-0.0
4,301,135	-		EFB2_04093	0.74	+0.2
4,301,135	-		EFB2_04093	0.74	+1.7
4,301,135	-		EFB2_04093	0.74	+0.4
4,301,135	-		EFB2_04093	0.74	+0.4
4,301,135	-		EFB2_04093	0.74	-1.1
4,301,135	-		EFB2_04093	0.74	-0.1
4,301,135	-		EFB2_04093	0.74	-1.1
4,301,168	+		EFB2_04093	0.76	-0.6
4,301,168	+		EFB2_04093	0.76	+1.3
4,301,169	-		EFB2_04093	0.76	+0.0
4,301,169	-		EFB2_04093	0.76	+0.9
4,301,169	-		EFB2_04093	0.76	-1.2
4,301,172	+		EFB2_04093	0.77	+1.3
4,301,173	-		EFB2_04093	0.77	+0.6
4,301,173	-		EFB2_04093	0.77	+0.3
4,301,173	-		EFB2_04093	0.77	-1.8
4,301,177	+		EFB2_04093	0.77	+2.1
4,301,177	+		EFB2_04093	0.77	+0.5
4,301,177	+		EFB2_04093	0.77	+2.2
4,301,177	+		EFB2_04093	0.77	-0.5
4,301,177	+		EFB2_04093	0.77	+0.2
4,301,177	+		EFB2_04093	0.77	-0.4
4,301,177	+		EFB2_04093	0.77	-0.4
4,301,177	+		EFB2_04093	0.77	+0.6
4,301,178	-		EFB2_04093	0.77	-0.7
4,301,178	-		EFB2_04093	0.77	+0.2
4,301,178	-		EFB2_04093	0.77	+0.8
4,301,178	-		EFB2_04093	0.77	-0.2
4,301,178	-		EFB2_04093	0.77	+0.9
4,301,178	-		EFB2_04093	0.77	-0.5
4,301,181	+		EFB2_04093	0.77	+0.2
4,301,181	+		EFB2_04093	0.77	+1.7
4,301,181	+		EFB2_04093	0.77	+0.7
4,301,181	+		EFB2_04093	0.77	+0.1
4,301,181	+		EFB2_04093	0.77	+0.5
4,301,182	-		EFB2_04093	0.77	-0.0
4,301,182	-		EFB2_04093	0.77	+0.4
4,301,182	-		EFB2_04093	0.77	-0.2
4,301,182	-		EFB2_04093	0.77	-0.8
4,301,182	-		EFB2_04093	0.77	+0.9
4,301,278	-		EFB2_04093	0.83	-1.0
4,301,278	-		EFB2_04093	0.83	+2.2
4,301,317	-		EFB2_04093	0.85	-2.8
4,301,322	+		EFB2_04093	0.86	-1.7
4,301,322	+		EFB2_04093	0.86	+1.2
4,301,322	+		EFB2_04093	0.86	-1.7
4,301,323	-		EFB2_04093	0.86	-0.8
4,301,323	-		EFB2_04093	0.86	-1.5
4,301,323	-		EFB2_04093	0.86	-1.0
4,301,323	-		EFB2_04093	0.86	-0.3
4,301,323	-		EFB2_04093	0.86	-0.3
4,301,323	-		EFB2_04093	0.86	-2.2
4,301,342	+		EFB2_04093	0.87	-2.2
4,301,342	+		EFB2_04093	0.87	-0.6
4,301,342	+		EFB2_04093	0.87	+1.0
4,301,342	+		EFB2_04093	0.87	-2.1
4,301,343	-		EFB2_04093	0.87	-1.7
4,301,343	-		EFB2_04093	0.87	+0.3
4,301,343	-		EFB2_04093	0.87	-3.7
4,301,343	-		EFB2_04093	0.87	-0.2
4,301,343	-		EFB2_04093	0.87	+0.2
4,301,343	-		EFB2_04093	0.87	+0.6
4,301,371	-		EFB2_04093	0.88	+0.3
4,301,371	-		EFB2_04093	0.88	-0.7
4,301,434	+				-1.3
4,301,434	+				-0.4
4,301,434	+				+0.2
4,301,435	-				-0.7
4,301,435	-				-2.1
4,301,435	-				+0.9
4,301,435	-				-2.0
4,301,473	-				+0.2
4,301,473	-				+0.8
4,301,500	+				+0.8
4,301,500	+				-0.0
4,301,500	+				-1.7
4,301,500	+				-1.4
4,301,500	+				-0.2
4,301,501	-				-2.2
4,301,501	-				-2.1
4,301,501	-				-0.2
4,301,501	-				-1.3
4,301,501	-				+1.9
4,301,530	+				-1.2
4,301,530	+				+1.7
4,301,530	+				-0.3
4,301,530	+				-1.3
4,301,530	+				+1.1
4,301,530	+				+0.4
4,301,530	+				+0.9
4,301,530	+				+1.0
4,301,531	-				+1.9
4,301,531	-				-0.6
4,301,531	-				-1.3
4,301,531	-				-0.8
4,301,531	-				-0.7
4,301,531	-				+0.8
4,301,531	-				+0.3
4,301,531	-				-3.2
4,301,531	-				-1.2
4,301,531	-				+0.5
4,301,550	+				+1.0
4,301,557	+				+1.9
4,301,557	+				+1.2
4,301,557	+				-1.2
4,301,558	-				+0.7
4,301,558	-				+0.1
4,301,558	-				-0.9
4,301,558	-				+0.9
4,301,558	-				+0.0
4,301,558	-				-1.4
4,301,558	-				-0.8
4,301,618	+				+0.9
4,301,625	-				-0.9
4,301,653	+				+0.7
4,301,681	+				-1.5
4,301,682	-				-1.3
4,301,685	+				+1.3
4,301,685	+				-2.3
4,301,685	+				-0.0
4,301,686	-				-1.2
4,301,686	-				+1.9
4,301,686	-				-0.7
4,301,686	-				+0.3
4,301,686	-				+0.5
4,301,686	-				+0.5
4,301,686	-				-0.9
4,301,689	+				-0.6
4,301,689	+				+0.9
4,301,690	-				-0.8
4,301,690	-				+0.1
4,301,703	+				-2.8
4,301,706	-				-2.4
4,301,709	+				+1.2
4,301,728	-				-0.4
4,301,742	-				+0.5
4,301,781	+				-0.2
4,301,781	+				+0.4
4,301,781	+				-1.2
4,301,781	+				-0.4
4,301,781	+				+0.3
4,301,782	-				+0.7
4,301,782	-				+1.7
4,301,794	+				+1.9
4,301,794	+				+0.4
4,301,794	+				+0.2
4,301,795	-				-2.5
4,301,795	-				+0.5
4,301,795	-				-0.7
4,301,795	-				-1.4
4,301,806	+				+0.3
4,301,806	+				-0.2
4,301,806	+				+0.7
4,301,806	+				+0.9
4,301,807	-				+2.2
4,301,807	-				+2.6
4,301,807	-				+0.4
4,301,807	-				+0.3
4,301,807	-				-1.9
4,301,810	+				-0.9
4,301,810	+				-0.3
4,301,811	-				+0.2
4,301,811	-				-1.9
4,301,811	-				-0.2
4,301,811	-				-2.8
4,301,815	+				-2.0
4,301,815	+				+0.8
4,301,816	-				-0.1
4,301,816	-				+1.4
4,301,820	+				-0.4
4,301,830	+				+0.2
4,301,830	+				+0.6
4,301,831	-				-1.0
4,301,831	-				-2.2
4,301,831	-				+3.0
4,301,867	+				+0.7
4,301,868	-				-1.8
4,301,868	-				-0.5
4,301,868	-				-0.7
4,301,868	-				-0.2
4,301,868	-				+1.3
4,301,892	+				+0.4
4,301,892	+				+1.2
4,301,892	+				-0.6
4,301,893	-				+0.1
4,301,893	-				+3.7
4,301,893	-				-1.3
4,301,893	-				+1.8
4,301,893	-				+1.9
4,301,893	-				+0.7
4,301,893	-				+0.2
4,301,893	-				+0.4
4,301,893	-				-0.7
4,301,911	+				-0.0
4,301,911	+				+0.1
4,301,911	+				-1.8
4,301,911	+				-2.1
4,301,911	+				+0.2
4,301,911	+				-0.4
4,301,911	+				-0.8
4,301,911	+				+0.7
4,301,912	-				-0.8
4,301,912	-				+0.3
4,301,912	-				-0.7
4,301,912	-				+0.1
4,301,912	-				-0.1
4,301,914	+				-0.7
4,301,914	+				-2.8
4,301,915	-				-0.6
4,301,921	+				-0.6
4,301,921	+				+0.5
4,301,921	+				-3.7
4,301,921	+				+0.1
4,301,921	+				+0.3
4,301,921	+				+1.0
4,301,921	+				+1.1
4,301,921	+				+0.5
4,301,921	+				-0.8
4,301,921	+				+1.1
4,301,921	+				-0.5
4,301,921	+				-0.4
4,301,921	+				-1.2
4,301,921	+				+0.3
4,301,922	-				-2.8
4,301,922	-				+0.7
4,301,922	-				+0.4
4,301,922	-				-0.5
4,301,922	-				-2.9
4,301,922	-				-0.9
4,301,922	-				-0.3
4,301,922	-				+2.2
4,301,922	-				-0.2
4,301,935	+				+0.3
4,301,935	+				-2.8
4,301,935	+				-0.5
4,301,935	+				+1.0
4,301,936	-				-2.9
4,301,938	+				+0.7
4,301,938	+				-0.7
4,301,939	-				-1.4
4,301,944	+				-0.7
4,301,944	+				-1.8
4,301,944	+				+0.4
4,301,944	+				+0.0
4,301,944	+				-0.5
4,301,945	-				-1.3
4,301,945	-				-1.3
4,301,945	-				+0.6
4,301,945	-				+0.8
4,301,947	+				+0.6
4,301,947	+				+3.3
4,301,948	-				-0.0
4,301,948	-				-3.3
4,301,955	+				+0.4
4,301,956	-				-0.7
4,301,967	+				+0.4
4,301,967	+				-0.6
4,301,967	+				+0.1
4,301,967	+				-0.2
4,301,967	+				+0.6
4,301,967	+				-1.7
4,301,967	+				-0.2
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4,304,387	-		EFB2_04095	0.88	+1.8
4,304,387	-		EFB2_04095	0.88	-0.8
4,304,397	+				-2.2
4,304,397	+				+0.8
4,304,397	+				-3.1
4,304,397	+				-0.2
4,304,397	+				-0.3
4,304,397	+				-0.2
4,304,397	+				+0.5
4,304,397	+				-2.4
4,304,397	+				-0.1
4,304,397	+				-2.1
4,304,397	+				+0.5
4,304,397	+				-0.8
4,304,397	+				-0.0
4,304,398	-				+0.3
4,304,398	-				-2.2
4,304,398	-				-0.4
4,304,398	-				+0.8
4,304,398	-				+0.7
4,304,398	-				-2.1
4,304,398	-				+0.6
4,304,398	-				+1.2
4,304,398	-				+0.3
4,304,398	-				-3.5
4,304,398	-				-0.9
4,304,398	-				-0.3
4,304,408	+				+2.5
4,304,438	+				-1.4
4,304,438	+				+1.2
4,304,439	-				-0.2
4,304,439	-				+0.6
4,304,439	-				+0.9
4,304,439	-				-0.7
4,304,439	-				+0.5
4,304,439	-				+0.3
4,304,443	+				-2.4
4,304,443	+				-2.5
4,304,443	+				-0.8
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4,304,489	+				-1.3
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4,304,490	-				-0.5
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4,304,511	+				+2.8
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4,305,024	-		EFB2_04096	0.63	-0.7
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4,305,068	+		EFB2_04096	0.68	+1.0