Strain Fitness in Escherichia fergusonii Becca around EFB2_02359

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,493,399	-		EFB2_02358	0.74	+1.0
2,493,399	-		EFB2_02358	0.74	+1.0
2,493,399	-		EFB2_02358	0.74	-0.2
2,493,432	-		EFB2_02358	0.76	-0.4
2,493,432	-		EFB2_02358	0.76	-1.3
2,493,437	+		EFB2_02358	0.77	-2.1
2,493,437	+		EFB2_02358	0.77	+2.4
2,493,437	+		EFB2_02358	0.77	+0.1
2,493,438	-		EFB2_02358	0.77	-0.6
2,493,438	-		EFB2_02358	0.77	-0.6
2,493,438	-		EFB2_02358	0.77	-2.2
2,493,439	+		EFB2_02358	0.77	-1.7
2,493,439	+		EFB2_02358	0.77	-0.9
2,493,439	+		EFB2_02358	0.77	-0.8
2,493,439	+		EFB2_02358	0.77	+1.5
2,493,439	+		EFB2_02358	0.77	+0.1
2,493,440	-		EFB2_02358	0.77	-0.5
2,493,440	-		EFB2_02358	0.77	+2.0
2,493,440	-		EFB2_02358	0.77	+0.7
2,493,440	-		EFB2_02358	0.77	+1.2
2,493,440	-		EFB2_02358	0.77	-0.1
2,493,440	-		EFB2_02358	0.77	+0.5
2,493,440	-		EFB2_02358	0.77	-1.8
2,493,440	-		EFB2_02358	0.77	+2.0
2,493,440	-		EFB2_02358	0.77	+1.7
2,493,440	-		EFB2_02358	0.77	-0.8
2,493,440	-		EFB2_02358	0.77	+0.5
2,493,440	-		EFB2_02358	0.77	+1.1
2,493,482	-		EFB2_02358	0.80	+2.0
2,493,482	-		EFB2_02358	0.80	+1.9
2,493,482	-		EFB2_02358	0.80	+1.2
2,493,501	-		EFB2_02358	0.81	-1.9
2,493,501	-		EFB2_02358	0.81	-0.8
2,493,512	+		EFB2_02358	0.82	+0.1
2,493,513	-		EFB2_02358	0.82	+0.6
2,493,513	-		EFB2_02358	0.82	-2.2
2,493,513	-		EFB2_02358	0.82	-0.1
2,493,517	-		EFB2_02358	0.82	+0.2
2,493,517	-		EFB2_02358	0.82	-0.1
2,493,517	-		EFB2_02358	0.82	+2.5
2,493,517	-		EFB2_02358	0.82	-0.4
2,493,525	-		EFB2_02358	0.83	+0.4
2,493,525	-		EFB2_02358	0.83	-2.2
2,493,525	-		EFB2_02358	0.83	-2.5
2,493,535	-		EFB2_02358	0.83	-0.0
2,493,575	-		EFB2_02358	0.86	-0.4
2,493,587	+		EFB2_02358	0.87	+0.0
2,493,588	-		EFB2_02358	0.87	-1.7
2,493,626	+		EFB2_02358	0.89	-0.4
2,493,626	+		EFB2_02358	0.89	-0.4
2,493,627	-		EFB2_02358	0.89	-0.3
2,493,627	-		EFB2_02358	0.89	-0.0
2,493,646	+				-1.8
2,493,656	+				-2.7
2,493,657	-				+0.2
2,493,657	-				+0.8
2,493,666	+				+0.4
2,493,667	-				+0.5
2,493,667	-				-0.2
2,493,673	+				+0.4
2,493,674	-				-1.9
2,493,677	-				+0.2
2,493,677	-				+1.5
2,493,694	-				+2.4
2,493,715	+				-1.9
2,493,715	+				+1.4
2,493,715	+				+0.4
2,493,715	+				-0.6
2,493,715	+				+0.2
2,493,715	+				+0.8
2,493,715	+				+0.1
2,493,716	-				+2.0
2,493,716	-				-1.0
2,493,716	-				+2.2
2,493,716	-				-1.3
2,493,716	-				+1.1
2,493,716	-				-0.6
2,493,716	-				+0.9
2,493,735	-				-1.0
2,493,735	-				+0.6
2,493,735	-				-0.5
2,493,790	-				+1.0
2,493,790	-				-1.1
2,493,790	-				+2.0
2,493,810	+				+0.0
2,493,810	+				+0.0
2,493,810	+				+1.2
2,493,811	-				+0.1
2,493,835	+				-1.6
2,493,835	+				+2.0
2,493,835	+				+1.3
2,493,836	-				-0.9
2,493,842	-				-1.3
2,493,850	+				+1.2
2,493,863	+				+0.3
2,493,863	+				+1.7
2,493,864	-				-1.6
2,493,864	-				+0.3
2,493,865	+				+2.1
2,493,865	+				+0.6
2,493,866	-				-1.6
2,493,866	-				-0.1
2,493,866	-				-0.5
2,493,866	-				+0.3
2,493,866	-				+0.6
2,493,866	-				-2.0
2,493,887	+				+1.2
2,493,887	+				+1.4
2,493,888	-				+1.6
2,493,888	-				-0.2
2,493,888	-				+0.9
2,493,888	-				+0.3
2,493,888	-				+0.9
2,493,888	-				-1.6
2,493,888	-				+0.0
2,493,888	-				-0.3
2,493,898	-				+1.1
2,493,898	-				-0.2
2,493,940	+				+2.6
2,493,940	+				-0.5
2,494,066	+				+0.3
2,494,066	+				+0.6
2,494,069	+				+2.4
2,494,069	+				-2.5
2,494,093	+				+0.6
2,494,122	-				+0.1
2,494,132	-				+0.8
2,494,140	-				+1.0
2,494,140	-				-1.4
2,494,259	+				+1.1
2,494,259	+				+0.5
2,494,291	+				-0.3
2,494,291	+				+0.1
2,494,301	+				-0.0
2,494,363	+				+0.7
2,494,397	+				-2.0
2,494,397	+				-1.8
2,494,397	+				+2.0
2,494,398	-				+0.5
2,494,398	-				-0.8
2,494,398	-				+0.9
2,494,398	-				-1.8
2,494,398	-				+0.2
2,494,419	-				-0.0
2,494,419	-				+0.3
2,494,437	+				+2.7
2,494,438	-				-1.3
2,494,440	+				-0.4
2,494,440	+				+3.4
2,494,441	-				+1.4
2,494,441	-				-0.4
2,494,441	-				-1.9
2,494,441	-				-2.5
2,494,441	-				-2.8
2,494,441	-				-0.6
2,494,441	-				+0.8
2,494,441	-				+1.2
2,494,441	-				+1.3
2,494,441	-				-1.1
2,494,476	+		EFB2_02359	0.13	+0.8
2,494,476	+		EFB2_02359	0.13	+1.2
2,494,476	+		EFB2_02359	0.13	-1.6
2,494,476	+		EFB2_02359	0.13	+1.6
2,494,477	-		EFB2_02359	0.13	-2.7
2,494,477	-		EFB2_02359	0.13	-1.3
2,494,477	-		EFB2_02359	0.13	+1.8
2,494,479	-		EFB2_02359	0.13	-2.2
2,494,544	-		EFB2_02359	0.23	+1.8
2,494,556	-		EFB2_02359	0.25	-1.0
2,494,556	-		EFB2_02359	0.25	-1.8
2,494,556	-		EFB2_02359	0.25	+0.3
2,494,591	-		EFB2_02359	0.31	+0.4
2,494,629	+		EFB2_02359	0.37	+3.0
2,494,630	-		EFB2_02359	0.37	+0.6
2,494,630	-		EFB2_02359	0.37	-3.3
2,494,630	-		EFB2_02359	0.37	+0.1
2,494,630	-		EFB2_02359	0.37	+0.4
2,494,654	+		EFB2_02359	0.41	+1.3
2,494,655	-		EFB2_02359	0.41	-3.7
2,494,655	-		EFB2_02359	0.41	+2.6
2,494,658	-		EFB2_02359	0.41	-0.9
2,494,658	-		EFB2_02359	0.41	-1.4
2,494,731	+		EFB2_02359	0.53	-0.2
2,494,731	+		EFB2_02359	0.53	+1.2
2,494,731	+		EFB2_02359	0.53	+1.1
2,494,731	+		EFB2_02359	0.53	+0.8
2,494,732	-		EFB2_02359	0.53	-0.8
2,494,732	-		EFB2_02359	0.53	+0.9
2,494,732	-		EFB2_02359	0.53	+0.5
2,494,732	-		EFB2_02359	0.53	-0.2
2,494,732	-		EFB2_02359	0.53	+0.3
2,494,732	-		EFB2_02359	0.53	+2.0
2,494,732	-		EFB2_02359	0.53	+1.8
2,494,745	-		EFB2_02359	0.55	+0.4
2,494,745	-		EFB2_02359	0.55	+1.0
2,494,747	+		EFB2_02359	0.55	+0.2
2,494,748	-		EFB2_02359	0.55	+0.1
2,494,748	-		EFB2_02359	0.55	+2.1
2,494,748	-		EFB2_02359	0.55	+1.0
2,494,748	-		EFB2_02359	0.55	+3.0
2,494,748	-		EFB2_02359	0.55	-0.2
2,494,748	-		EFB2_02359	0.55	+1.5
2,494,748	-		EFB2_02359	0.55	-0.8
2,494,748	-		EFB2_02359	0.55	-0.2
2,494,748	-		EFB2_02359	0.55	+1.6
2,494,748	-		EFB2_02359	0.55	-1.8
2,494,748	-		EFB2_02359	0.55	-1.4
2,494,748	-		EFB2_02359	0.55	+0.3
2,494,749	+		EFB2_02359	0.56	+2.4
2,494,749	+		EFB2_02359	0.56	-1.6
2,494,749	+		EFB2_02359	0.56	+0.6
2,494,750	-		EFB2_02359	0.56	+0.5
2,494,750	-		EFB2_02359	0.56	-1.8
2,494,750	-		EFB2_02359	0.56	+0.3
2,494,750	-		EFB2_02359	0.56	-1.6
2,494,750	-		EFB2_02359	0.56	+0.3
2,494,750	-		EFB2_02359	0.56	-0.9
2,494,750	-		EFB2_02359	0.56	-1.6
2,494,750	-		EFB2_02359	0.56	+1.4
2,494,767	+		EFB2_02359	0.58	-2.0
2,494,785	+		EFB2_02359	0.61	+0.8
2,494,786	-		EFB2_02359	0.61	+0.9
2,494,786	-		EFB2_02359	0.61	-0.7
2,494,786	-		EFB2_02359	0.61	-0.8
2,494,788	-		EFB2_02359	0.62	+0.1
2,494,788	-		EFB2_02359	0.62	+0.4
2,494,808	+		EFB2_02359	0.65	+1.9
2,494,808	+		EFB2_02359	0.65	+0.4
2,494,808	+		EFB2_02359	0.65	+0.1
2,494,808	+		EFB2_02359	0.65	-0.1
2,494,809	-		EFB2_02359	0.65	-1.0
2,494,809	-		EFB2_02359	0.65	+3.4
2,494,809	-		EFB2_02359	0.65	+0.1
2,494,809	-		EFB2_02359	0.65	+0.7
2,494,809	-		EFB2_02359	0.65	+0.9
2,494,809	-		EFB2_02359	0.65	+1.4
2,494,854	+		EFB2_02359	0.72	-0.4
2,494,854	+		EFB2_02359	0.72	+2.4
2,494,855	-		EFB2_02359	0.72	+0.4
2,494,855	-		EFB2_02359	0.72	-2.3
2,494,855	-		EFB2_02359	0.72	+0.4
2,494,855	-		EFB2_02359	0.72	-1.2
2,494,855	-		EFB2_02359	0.72	+1.7
2,494,855	-		EFB2_02359	0.72	+1.7
2,494,855	-		EFB2_02359	0.72	-3.5
2,494,858	-		EFB2_02359	0.73	-0.2
2,494,858	-		EFB2_02359	0.73	+0.1
2,494,869	-		EFB2_02359	0.74	-1.1
2,494,888	-		EFB2_02359	0.77	-1.8
2,494,888	-		EFB2_02359	0.77	-1.2
2,494,888	-		EFB2_02359	0.77	-0.7
2,494,888	-		EFB2_02359	0.77	+1.0
2,494,890	+		EFB2_02359	0.78	-0.8
2,494,891	-		EFB2_02359	0.78	+1.3
2,494,891	-		EFB2_02359	0.78	-1.3
2,495,012	-				-0.1
2,495,085	-				+0.1
2,495,117	-		EFB2_02360	0.12	+1.1
2,495,148	-		EFB2_02360	0.17	-0.3
2,495,148	-		EFB2_02360	0.17	-1.2
2,495,211	+		EFB2_02360	0.26	-1.4
2,495,212	-		EFB2_02360	0.26	+0.8
2,495,215	-		EFB2_02360	0.26	-0.9
2,495,215	-		EFB2_02360	0.26	-0.5
2,495,229	-		EFB2_02360	0.28	-0.2
2,495,229	-		EFB2_02360	0.28	-0.2
2,495,229	-		EFB2_02360	0.28	-0.4
2,495,229	-		EFB2_02360	0.28	+1.4
2,495,229	-		EFB2_02360	0.28	-0.9
2,495,229	-		EFB2_02360	0.28	-0.8
2,495,232	+		EFB2_02360	0.29	+0.4
2,495,232	+		EFB2_02360	0.29	+1.2
2,495,233	-		EFB2_02360	0.29	+1.8
2,495,233	-		EFB2_02360	0.29	+0.3
2,495,233	-		EFB2_02360	0.29	+1.7
2,495,233	-		EFB2_02360	0.29	-0.2
2,495,233	-		EFB2_02360	0.29	-0.2
2,495,233	-		EFB2_02360	0.29	-1.8
2,495,233	-		EFB2_02360	0.29	-2.4
2,495,284	-		EFB2_02360	0.36	+0.2
2,495,399	+		EFB2_02360	0.53	-1.0
2,495,399	+		EFB2_02360	0.53	-0.8
2,495,399	+		EFB2_02360	0.53	-0.6
2,495,400	-		EFB2_02360	0.53	-0.0
2,495,400	-		EFB2_02360	0.53	-1.2
2,495,406	-		EFB2_02360	0.54	-1.0
2,495,443	+		EFB2_02360	0.59	-0.9
2,495,443	+		EFB2_02360	0.59	+0.2
2,495,443	+		EFB2_02360	0.59	+3.2
2,495,443	+		EFB2_02360	0.59	+1.9
2,495,444	-		EFB2_02360	0.59	-1.7
2,495,444	-		EFB2_02360	0.59	+0.2
2,495,458	+		EFB2_02360	0.61	-2.6
2,495,459	-		EFB2_02360	0.61	+1.0
2,495,479	-		EFB2_02360	0.64	+1.9
2,495,512	+		EFB2_02360	0.69	+0.8
2,495,513	-		EFB2_02360	0.69	+2.6
2,495,513	-		EFB2_02360	0.69	-0.6
2,495,513	-		EFB2_02360	0.69	-2.0
2,495,513	-		EFB2_02360	0.69	+0.7
2,495,513	-		EFB2_02360	0.69	-1.7
2,495,513	-		EFB2_02360	0.69	-1.4
2,495,592	-		EFB2_02360	0.81	+0.2
2,495,705	+				-1.8
2,495,706	-				+0.1
2,495,715	-				-1.0
2,495,731	+				-0.9
2,495,731	+				+1.5
2,495,732	-				+0.7
2,495,782	+				-1.0
2,495,783	-				+0.8
2,495,808	-		EFB2_02361	0.13	-0.9
2,495,825	+		EFB2_02361	0.15	-0.4
2,495,826	-		EFB2_02361	0.15	-1.6
2,496,003	+		EFB2_02361	0.44	+0.8
2,496,004	-		EFB2_02361	0.44	-0.4
2,496,004	-		EFB2_02361	0.44	-0.6
2,496,004	-		EFB2_02361	0.44	-0.5