Strain Fitness in Escherichia fergusonii Becca around EFB2_01907

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,030,042	+		EFB2_01906	0.63	-0.1
2,030,042	+		EFB2_01906	0.63	+1.0
2,030,042	+		EFB2_01906	0.63	-1.2
2,030,042	+		EFB2_01906	0.63	+0.6
2,030,043	-		EFB2_01906	0.63	+0.5
2,030,043	-		EFB2_01906	0.63	-0.2
2,030,043	-		EFB2_01906	0.63	+0.7
2,030,073	+		EFB2_01906	0.64	+0.4
2,030,073	+		EFB2_01906	0.64	+0.3
2,030,073	+		EFB2_01906	0.64	-0.3
2,030,089	+		EFB2_01906	0.65	+1.2
2,030,089	+		EFB2_01906	0.65	+0.6
2,030,089	+		EFB2_01906	0.65	+2.5
2,030,090	-		EFB2_01906	0.65	-0.2
2,030,090	-		EFB2_01906	0.65	+0.6
2,030,102	+		EFB2_01906	0.65	-0.7
2,030,103	-		EFB2_01906	0.65	+1.5
2,030,149	-		EFB2_01906	0.67	-2.3
2,030,149	-		EFB2_01906	0.67	+1.7
2,030,179	-		EFB2_01906	0.68	+2.5
2,030,208	+		EFB2_01906	0.69	+0.0
2,030,208	+		EFB2_01906	0.69	-2.2
2,030,208	+		EFB2_01906	0.69	+0.7
2,030,208	+		EFB2_01906	0.69	-1.1
2,030,208	+		EFB2_01906	0.69	+0.0
2,030,209	-		EFB2_01906	0.69	-0.1
2,030,209	-		EFB2_01906	0.69	+1.1
2,030,209	-		EFB2_01906	0.69	+0.8
2,030,361	-		EFB2_01906	0.75	-2.5
2,030,361	-		EFB2_01906	0.75	+1.5
2,030,404	+		EFB2_01906	0.77	+1.1
2,030,473	+		EFB2_01906	0.79	-0.2
2,030,473	+		EFB2_01906	0.79	-2.0
2,030,473	+		EFB2_01906	0.79	+0.3
2,030,473	+		EFB2_01906	0.79	+0.5
2,030,473	+		EFB2_01906	0.79	+0.6
2,030,473	+		EFB2_01906	0.79	+1.7
2,030,474	-		EFB2_01906	0.79	+0.1
2,030,474	-		EFB2_01906	0.79	-0.7
2,030,474	-		EFB2_01906	0.79	-0.9
2,030,474	-		EFB2_01906	0.79	+1.4
2,030,474	-		EFB2_01906	0.79	-0.8
2,030,502	+		EFB2_01906	0.80	-2.2
2,030,520	+		EFB2_01906	0.81	+0.6
2,030,520	+		EFB2_01906	0.81	+0.4
2,030,520	+		EFB2_01906	0.81	-2.9
2,030,520	+		EFB2_01906	0.81	-2.0
2,030,520	+		EFB2_01906	0.81	+0.6
2,030,520	+		EFB2_01906	0.81	-1.5
2,030,520	+		EFB2_01906	0.81	+0.1
2,030,520	+		EFB2_01906	0.81	-0.6
2,030,520	+		EFB2_01906	0.81	+0.8
2,030,520	+		EFB2_01906	0.81	+1.1
2,030,520	+		EFB2_01906	0.81	-0.9
2,030,520	+		EFB2_01906	0.81	-0.8
2,030,520	+		EFB2_01906	0.81	-0.2
2,030,520	+		EFB2_01906	0.81	+1.1
2,030,520	+		EFB2_01906	0.81	+3.1
2,030,520	+		EFB2_01906	0.81	-0.7
2,030,521	-		EFB2_01906	0.81	-0.3
2,030,521	-		EFB2_01906	0.81	-1.0
2,030,521	-		EFB2_01906	0.81	-1.0
2,030,521	-		EFB2_01906	0.81	+0.5
2,030,521	-		EFB2_01906	0.81	-1.2
2,030,521	-		EFB2_01906	0.81	-2.2
2,030,521	-		EFB2_01906	0.81	-1.5
2,030,521	-		EFB2_01906	0.81	+0.3
2,030,528	+		EFB2_01906	0.81	+0.3
2,030,528	+		EFB2_01906	0.81	-2.0
2,030,529	-		EFB2_01906	0.81	-2.0
2,030,529	-		EFB2_01906	0.81	+1.9
2,030,554	+		EFB2_01906	0.82	+1.0
2,030,554	+		EFB2_01906	0.82	+0.9
2,030,555	-		EFB2_01906	0.82	-0.1
2,030,555	-		EFB2_01906	0.82	-0.0
2,030,580	-		EFB2_01906	0.83	+0.4
2,030,618	+		EFB2_01906	0.85	-1.1
2,030,618	+		EFB2_01906	0.85	+0.1
2,030,619	-		EFB2_01906	0.85	+0.7
2,030,619	-		EFB2_01906	0.85	-1.4
2,030,666	-		EFB2_01906	0.87	-0.8
2,030,712	-		EFB2_01906	0.89	+1.0
2,030,730	+		EFB2_01906	0.89	-1.2
2,030,731	-		EFB2_01906	0.89	+0.4
2,030,736	+		EFB2_01906	0.89	-0.6
2,030,736	+		EFB2_01906	0.89	-1.2
2,030,737	-		EFB2_01906	0.89	-3.2
2,030,737	-		EFB2_01906	0.89	+1.7
2,030,737	-		EFB2_01906	0.89	+0.8
2,030,737	-		EFB2_01906	0.89	-0.2
2,030,745	+		EFB2_01906	0.90	-2.7
2,030,765	-				-0.1
2,030,771	+				+0.7
2,030,771	+				+0.4
2,030,771	+				+1.7
2,030,771	+				+0.1
2,030,771	+				+2.0
2,030,771	+				+1.8
2,030,771	+				-0.4
2,030,771	+				-0.0
2,030,771	+				+1.4
2,030,771	+				-0.7
2,030,771	+				+2.2
2,030,771	+				+0.2
2,030,771	+				+0.4
2,030,771	+				-2.1
2,030,771	+				-1.1
2,030,771	+				+1.9
2,030,771	+				+1.5
2,030,771	+				+0.4
2,030,771	+				-0.9
2,030,771	+				-1.1
2,030,771	+				-0.4
2,030,771	+				+1.7
2,030,771	+				+3.2
2,030,771	+				-1.9
2,030,771	+				-1.0
2,030,771	+				+0.9
2,030,772	-				-0.8
2,030,772	-				-0.8
2,030,772	-				-1.0
2,030,772	-				-1.7
2,030,772	-				+3.8
2,030,772	-				+1.2
2,030,772	-				-0.5
2,030,772	-				-0.8
2,030,772	-				-2.6
2,030,772	-				+2.2
2,030,772	-				-1.7
2,030,772	-				-0.5
2,030,772	-				+0.3
2,030,772	-				+0.1
2,030,772	-				+1.4
2,030,772	-				+0.4
2,030,772	-				+1.7
2,030,772	-				+0.1
2,030,772	-				-1.5
2,030,772	-				-2.6
2,030,772	-				-0.8
2,030,772	-				-0.4
2,030,772	-				+1.4
2,030,772	-				+0.8
2,030,773	+				-2.6
2,030,773	+				+0.6
2,030,773	+				-1.7
2,030,773	+				+0.1
2,030,773	+				+1.0
2,030,773	+				-0.7
2,030,773	+				-2.7
2,030,773	+				+1.2
2,030,773	+				-2.4
2,030,773	+				-1.2
2,030,774	-				+1.5
2,030,774	-				-1.7
2,030,774	-				-0.1
2,030,774	-				-2.7
2,030,774	-				+0.1
2,030,774	-				+1.3
2,030,774	-				-1.2
2,030,774	-				+1.6
2,030,774	-				+1.8
2,030,774	-				+0.8
2,030,806	-				-1.1
2,030,806	-				-0.4
2,030,841	+				-0.0
2,030,842	-				+1.9
2,030,883	+				-0.4
2,030,901	+				-3.3
2,030,901	+				-0.6
2,030,901	+				-1.0
2,030,901	+				-0.4
2,030,901	+				+2.2
2,030,901	+				+1.5
2,030,901	+				+0.2
2,030,901	+				-0.3
2,030,901	+				+1.3
2,030,901	+				-0.0
2,030,901	+				+0.1
2,030,901	+				+1.3
2,030,901	+				+0.2
2,030,901	+				-1.2
2,030,902	-				+0.1
2,030,902	-				+0.9
2,030,902	-				-2.5
2,030,902	-				+0.5
2,030,902	-				-2.0
2,030,902	-				-0.6
2,030,902	-				-0.1
2,030,902	-				-0.7
2,030,902	-				-0.8
2,030,902	-				-0.4
2,030,902	-				-0.4
2,030,902	-				-2.2
2,030,902	-				-2.8
2,030,902	-				+1.0
2,030,905	+				-0.7
2,030,905	+				+0.4
2,030,905	+				+3.2
2,030,905	+				+2.4
2,030,905	+				-0.2
2,030,906	-				+0.1
2,030,906	-				-0.1
2,030,906	-				-0.4
2,030,947	+				-0.1
2,030,947	+				+1.4
2,030,947	+				-0.2
2,030,947	+				-0.2
2,030,947	+				-2.2
2,030,948	-				-0.2
2,030,948	-				-1.0
2,030,948	-				-0.4
2,030,948	-				+0.0
2,030,951	+				+0.2
2,030,951	+				+0.7
2,030,951	+				-2.5
2,030,952	-				-1.6
2,030,952	-				-0.8
2,030,997	+				-0.6
2,030,998	-				+0.3
2,031,037	-				+1.4
2,031,037	-				-0.4
2,031,039	+				-0.4
2,031,039	+				-0.4
2,031,039	+				+0.1
2,031,039	+				-0.5
2,031,039	+				+1.5
2,031,039	+				-2.6
2,031,039	+				+1.1
2,031,040	-				-0.2
2,031,040	-				-1.7
2,031,040	-				-0.8
2,031,040	-				-0.3
2,031,040	-				-0.2
2,031,040	-				-1.6
2,031,040	-				-0.8
2,031,040	-				-0.2
2,031,040	-				-2.1
2,031,040	-				-0.6
2,031,052	-				-1.0
2,031,073	+				-2.4
2,031,073	+				-2.0
2,031,073	+				-1.4
2,031,074	-				+0.6
2,031,074	-				+1.5
2,031,093	+				+1.6
2,031,093	+				+0.7
2,031,094	-				-0.3
2,031,094	-				+1.5
2,031,094	-				-1.8
2,031,100	+				+2.6
2,031,101	-				+3.0
2,031,101	-				-1.4
2,031,101	-				+0.2
2,031,162	+		EFB2_01907	0.16	+2.3
2,031,162	+		EFB2_01907	0.16	+0.8
2,031,162	+		EFB2_01907	0.16	+0.6
2,031,163	-		EFB2_01907	0.16	+3.6
2,031,163	-		EFB2_01907	0.16	-0.2
2,031,163	-		EFB2_01907	0.16	+0.5
2,031,163	-		EFB2_01907	0.16	+1.9
2,031,163	-		EFB2_01907	0.16	+1.2
2,031,163	-		EFB2_01907	0.16	-2.7
2,031,163	-		EFB2_01907	0.16	+1.2
2,031,163	-		EFB2_01907	0.16	+1.8
2,031,168	+		EFB2_01907	0.17	+1.3
2,031,168	+		EFB2_01907	0.17	-1.6
2,031,168	+		EFB2_01907	0.17	+2.0
2,031,168	+		EFB2_01907	0.17	+1.6
2,031,168	+		EFB2_01907	0.17	+0.6
2,031,168	+		EFB2_01907	0.17	+1.4
2,031,170	+		EFB2_01907	0.17	+0.3
2,031,170	+		EFB2_01907	0.17	+0.5
2,031,170	+		EFB2_01907	0.17	+1.2
2,031,171	-		EFB2_01907	0.17	+1.6
2,031,172	+		EFB2_01907	0.17	+0.6
2,031,173	-		EFB2_01907	0.17	+1.4
2,031,191	-		EFB2_01907	0.19	-1.5
2,031,205	+		EFB2_01907	0.21	+0.2
2,031,206	-		EFB2_01907	0.21	+1.9
2,031,206	-		EFB2_01907	0.21	+0.3
2,031,206	-		EFB2_01907	0.21	-0.2
2,031,206	-		EFB2_01907	0.21	-0.2
2,031,220	-		EFB2_01907	0.23	-1.1
2,031,220	-		EFB2_01907	0.23	-0.1
2,031,261	+		EFB2_01907	0.27	+0.8
2,031,261	+		EFB2_01907	0.27	+1.8
2,031,261	+		EFB2_01907	0.27	-0.1
2,031,261	+		EFB2_01907	0.27	+0.8
2,031,261	+		EFB2_01907	0.27	-1.4
2,031,261	+		EFB2_01907	0.27	+1.2
2,031,261	+		EFB2_01907	0.27	+1.1
2,031,261	+		EFB2_01907	0.27	-2.7
2,031,261	+		EFB2_01907	0.27	-0.6
2,031,262	-		EFB2_01907	0.28	+1.3
2,031,262	-		EFB2_01907	0.28	-2.0
2,031,262	-		EFB2_01907	0.28	-0.1
2,031,262	-		EFB2_01907	0.28	-2.2
2,031,262	-		EFB2_01907	0.28	+0.1
2,031,262	-		EFB2_01907	0.28	-0.8
2,031,262	-		EFB2_01907	0.28	-2.9
2,031,262	-		EFB2_01907	0.28	+2.2
2,031,286	+		EFB2_01907	0.30	+0.0
2,031,286	+		EFB2_01907	0.30	-3.0
2,031,287	-		EFB2_01907	0.30	-2.5
2,031,289	+		EFB2_01907	0.31	-0.8
2,031,289	+		EFB2_01907	0.31	-0.6
2,031,300	+		EFB2_01907	0.32	-1.0
2,031,301	-		EFB2_01907	0.32	+0.1
2,031,301	-		EFB2_01907	0.32	-1.2
2,031,318	+		EFB2_01907	0.34	+0.6
2,031,318	+		EFB2_01907	0.34	+0.6
2,031,318	+		EFB2_01907	0.34	+0.2
2,031,318	+		EFB2_01907	0.34	-2.0
2,031,318	+		EFB2_01907	0.34	+1.0
2,031,318	+		EFB2_01907	0.34	-1.5
2,031,318	+		EFB2_01907	0.34	+0.3
2,031,319	-		EFB2_01907	0.34	+1.2
2,031,319	-		EFB2_01907	0.34	-0.8
2,031,320	+		EFB2_01907	0.34	+0.3
2,031,320	+		EFB2_01907	0.34	+0.5
2,031,320	+		EFB2_01907	0.34	-2.0
2,031,320	+		EFB2_01907	0.34	+2.1
2,031,321	-		EFB2_01907	0.34	-1.5
2,031,321	-		EFB2_01907	0.34	-1.8
2,031,321	-		EFB2_01907	0.34	+0.5
2,031,321	-		EFB2_01907	0.34	+0.2
2,031,321	-		EFB2_01907	0.34	-0.1
2,031,321	-		EFB2_01907	0.34	-0.4
2,031,368	-		EFB2_01907	0.40	-0.8
2,031,368	-		EFB2_01907	0.40	+1.2
2,031,370	+		EFB2_01907	0.40	+4.8
2,031,370	+		EFB2_01907	0.40	-0.3
2,031,370	+		EFB2_01907	0.40	+1.1
2,031,370	+		EFB2_01907	0.40	+0.2
2,031,370	+		EFB2_01907	0.40	+0.9
2,031,370	+		EFB2_01907	0.40	-1.8
2,031,370	+		EFB2_01907	0.40	-1.2
2,031,370	+		EFB2_01907	0.40	-0.9
2,031,371	-		EFB2_01907	0.40	+2.6
2,031,371	-		EFB2_01907	0.40	+0.6
2,031,371	-		EFB2_01907	0.40	-1.6
2,031,381	+		EFB2_01907	0.41	-0.0
2,031,381	+		EFB2_01907	0.41	-0.0
2,031,382	-		EFB2_01907	0.41	-1.4
2,031,382	-		EFB2_01907	0.41	-2.4
2,031,382	-		EFB2_01907	0.41	-0.8
2,031,382	-		EFB2_01907	0.41	+0.6
2,031,385	+		EFB2_01907	0.42	-1.5
2,031,385	+		EFB2_01907	0.42	-1.2
2,031,385	+		EFB2_01907	0.42	+0.3
2,031,386	-		EFB2_01907	0.42	-0.1
2,031,386	-		EFB2_01907	0.42	-0.1
2,031,386	-		EFB2_01907	0.42	+0.6
2,031,386	-		EFB2_01907	0.42	-1.6
2,031,386	-		EFB2_01907	0.42	-1.4
2,031,386	-		EFB2_01907	0.42	-0.7
2,031,406	-		EFB2_01907	0.44	+1.5
2,031,442	+		EFB2_01907	0.48	-0.5
2,031,442	+		EFB2_01907	0.48	-2.2
2,031,489	+		EFB2_01907	0.54	-0.8
2,031,489	+		EFB2_01907	0.54	+1.1
2,031,489	+		EFB2_01907	0.54	+0.2
2,031,489	+		EFB2_01907	0.54	-1.6
2,031,489	+		EFB2_01907	0.54	-1.0
2,031,489	+		EFB2_01907	0.54	+0.1
2,031,489	+		EFB2_01907	0.54	-0.0
2,031,489	+		EFB2_01907	0.54	-1.9
2,031,489	+		EFB2_01907	0.54	-3.2
2,031,490	-		EFB2_01907	0.54	+0.8
2,031,490	-		EFB2_01907	0.54	-1.2
2,031,490	-		EFB2_01907	0.54	+1.3
2,031,490	-		EFB2_01907	0.54	+0.2
2,031,490	-		EFB2_01907	0.54	-1.5
2,031,490	-		EFB2_01907	0.54	+0.8
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2,032,764	+		EFB2_01909	0.52	-1.0
2,032,764	+		EFB2_01909	0.52	-0.8
2,032,764	+		EFB2_01909	0.52	+0.7
2,032,764	+		EFB2_01909	0.52	+0.3
2,032,765	-		EFB2_01909	0.53	-1.4
2,032,765	-		EFB2_01909	0.53	+0.2
2,032,765	-		EFB2_01909	0.53	-1.0
2,032,765	-		EFB2_01909	0.53	+1.2
2,032,765	-		EFB2_01909	0.53	+1.4
2,032,765	-		EFB2_01909	0.53	+0.3
2,032,765	-		EFB2_01909	0.53	+0.7
2,032,765	-		EFB2_01909	0.53	+1.2
2,032,765	-		EFB2_01909	0.53	-0.4
2,032,785	+		EFB2_01909	0.54	+0.8
2,032,785	+		EFB2_01909	0.54	-1.4
2,032,785	+		EFB2_01909	0.54	+0.2