Strain Fitness in Escherichia fergusonii Becca around EFB2_01744

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,846,910	+		EFB2_01743	0.39	-1.3
1,846,910	+		EFB2_01743	0.39	-1.2
1,846,914	+		EFB2_01743	0.39	-0.2
1,846,914	+		EFB2_01743	0.39	-2.7
1,846,914	+		EFB2_01743	0.39	-0.0
1,846,915	-		EFB2_01743	0.40	+1.7
1,846,915	-		EFB2_01743	0.40	-3.8
1,846,915	-		EFB2_01743	0.40	+1.5
1,846,915	-		EFB2_01743	0.40	+2.2
1,846,931	+		EFB2_01743	0.41	-1.3
1,846,932	-		EFB2_01743	0.41	-0.7
1,846,932	-		EFB2_01743	0.41	-0.6
1,846,994	+		EFB2_01743	0.47	-0.2
1,846,994	+		EFB2_01743	0.47	-2.9
1,846,994	+		EFB2_01743	0.47	+0.2
1,846,994	+		EFB2_01743	0.47	+0.9
1,846,994	+		EFB2_01743	0.47	-0.1
1,846,994	+		EFB2_01743	0.47	-1.5
1,846,995	-		EFB2_01743	0.47	-0.3
1,847,015	+		EFB2_01743	0.49	+2.4
1,847,016	-		EFB2_01743	0.49	-0.5
1,847,016	-		EFB2_01743	0.49	+0.5
1,847,028	+		EFB2_01743	0.50	-0.8
1,847,127	+		EFB2_01743	0.59	-0.9
1,847,141	+		EFB2_01743	0.60	-1.9
1,847,141	+		EFB2_01743	0.60	+0.9
1,847,141	+		EFB2_01743	0.60	-0.4
1,847,141	+		EFB2_01743	0.60	-1.0
1,847,141	+		EFB2_01743	0.60	+0.4
1,847,142	-		EFB2_01743	0.60	-0.3
1,847,142	-		EFB2_01743	0.60	-1.3
1,847,142	-		EFB2_01743	0.60	-0.5
1,847,142	-		EFB2_01743	0.60	+0.5
1,847,295	-		EFB2_01743	0.74	+3.2
1,847,318	+		EFB2_01743	0.76	+0.2
1,847,318	+		EFB2_01743	0.76	+1.9
1,847,318	+		EFB2_01743	0.76	-0.9
1,847,318	+		EFB2_01743	0.76	+0.7
1,847,318	+		EFB2_01743	0.76	-1.6
1,847,318	+		EFB2_01743	0.76	+1.6
1,847,318	+		EFB2_01743	0.76	+0.5
1,847,318	+		EFB2_01743	0.76	-2.5
1,847,319	-		EFB2_01743	0.76	+0.8
1,847,319	-		EFB2_01743	0.76	+1.7
1,847,319	-		EFB2_01743	0.76	-0.2
1,847,319	-		EFB2_01743	0.76	+4.2
1,847,319	-		EFB2_01743	0.76	+1.5
1,847,319	-		EFB2_01743	0.76	-1.0
1,847,319	-		EFB2_01743	0.76	+0.6
1,847,319	-		EFB2_01743	0.76	+0.0
1,847,319	-		EFB2_01743	0.76	+0.8
1,847,319	-		EFB2_01743	0.76	+0.9
1,847,319	-		EFB2_01743	0.76	-1.0
1,847,319	-		EFB2_01743	0.76	+0.6
1,847,319	-		EFB2_01743	0.76	-3.0
1,847,319	-		EFB2_01743	0.76	+0.6
1,847,319	-		EFB2_01743	0.76	+0.1
1,847,327	+		EFB2_01743	0.77	-3.0
1,847,328	-		EFB2_01743	0.77	+0.2
1,847,328	-		EFB2_01743	0.77	-1.9
1,847,328	-		EFB2_01743	0.77	+1.4
1,847,328	-		EFB2_01743	0.77	-2.2
1,847,328	-		EFB2_01743	0.77	-0.1
1,847,388	+		EFB2_01743	0.82	-0.5
1,847,389	-		EFB2_01743	0.82	-0.7
1,847,389	-		EFB2_01743	0.82	+0.4
1,847,419	+		EFB2_01743	0.85	-3.0
1,847,431	+		EFB2_01743	0.86	-0.1
1,847,431	+		EFB2_01743	0.86	+1.3
1,847,431	+		EFB2_01743	0.86	-0.8
1,847,431	+		EFB2_01743	0.86	-1.0
1,847,431	+		EFB2_01743	0.86	-1.3
1,847,431	+		EFB2_01743	0.86	-1.6
1,847,431	+		EFB2_01743	0.86	+0.4
1,847,431	+		EFB2_01743	0.86	+0.4
1,847,432	-		EFB2_01743	0.86	+0.9
1,847,432	-		EFB2_01743	0.86	-2.4
1,847,432	-		EFB2_01743	0.86	+0.1
1,847,448	-		EFB2_01743	0.88	-1.6
1,847,496	-				+0.3
1,847,499	+				-0.6
1,847,500	-				-0.7
1,847,500	-				-0.2
1,847,535	+				-0.5
1,847,535	+				-0.6
1,847,584	-				+0.5
1,847,590	+				-0.1
1,847,590	+				-1.8
1,847,590	+				-1.5
1,847,590	+				-3.0
1,847,591	-				-1.0
1,847,606	+				-3.3
1,847,615	+				-0.6
1,847,615	+				-0.6
1,847,616	-				+1.2
1,847,616	-				+0.6
1,847,616	-				-0.6
1,847,631	+				+2.0
1,847,631	+				+3.4
1,847,631	+				+1.2
1,847,631	+				-2.2
1,847,631	+				+0.2
1,847,631	+				-1.5
1,847,631	+				+0.4
1,847,631	+				+0.5
1,847,631	+				+1.4
1,847,631	+				+0.5
1,847,631	+				-3.8
1,847,631	+				+1.1
1,847,631	+				-2.7
1,847,631	+				-0.4
1,847,631	+				-0.9
1,847,631	+				+0.7
1,847,632	-				+0.6
1,847,632	-				-0.8
1,847,632	-				+2.2
1,847,632	-				+1.4
1,847,632	-				+1.0
1,847,632	-				-2.3
1,847,632	-				+0.4
1,847,632	-				-1.8
1,847,632	-				+0.7
1,847,632	-				+1.7
1,847,632	-				-1.8
1,847,632	-				-0.6
1,847,632	-				+2.2
1,847,632	-				+0.0
1,847,632	-				+0.1
1,847,646	+				+1.0
1,847,646	+				+0.9
1,847,646	+				-0.8
1,847,646	+				+0.2
1,847,646	+				+1.6
1,847,646	+				-0.4
1,847,647	-				+0.6
1,847,664	+				-0.6
1,847,665	-				-2.4
1,847,665	-				-0.5
1,847,675	+				+0.6
1,847,675	+				+2.5
1,847,675	+				-1.3
1,847,675	+				-0.2
1,847,676	-				-3.2
1,847,676	-				-3.0
1,847,676	-				-0.7
1,847,676	-				+1.2
1,847,676	-				-1.5
1,847,680	-				-1.2
1,847,692	-				-3.2
1,847,718	+				-1.5
1,847,719	-				-0.2
1,847,753	+				+0.4
1,847,754	-				-0.0
1,847,754	-				-1.4
1,847,754	-				-1.0
1,847,773	+				-1.6
1,847,773	+				-1.5
1,847,773	+				+1.0
1,847,773	+				+0.0
1,847,773	+				-1.9
1,847,773	+				-0.4
1,847,773	+				-1.4
1,847,774	-				+1.5
1,847,774	-				+0.6
1,847,774	-				+0.6
1,847,774	-				+1.2
1,847,782	+				+2.2
1,847,782	+				+2.2
1,847,782	+				-0.7
1,847,782	+				+0.7
1,847,782	+				-0.4
1,847,782	+				+0.2
1,847,782	+				-1.0
1,847,782	+				-0.1
1,847,782	+				+0.3
1,847,782	+				+0.1
1,847,782	+				+2.3
1,847,782	+				+0.8
1,847,782	+				-0.4
1,847,782	+				-1.8
1,847,782	+				-0.4
1,847,782	+				-0.1
1,847,782	+				-1.0
1,847,782	+				+0.6
1,847,782	+				-1.0
1,847,782	+				-1.6
1,847,782	+				+1.0
1,847,782	+				+1.9
1,847,783	-				+0.1
1,847,783	-				+0.2
1,847,783	-				-0.8
1,847,783	-				+0.0
1,847,783	-				+0.3
1,847,783	-				-2.5
1,847,783	-				-0.4
1,847,783	-				-0.8
1,847,783	-				-2.2
1,847,783	-				+0.6
1,847,783	-				-3.2
1,847,783	-				+0.6
1,847,783	-				+0.5
1,847,783	-				-0.5
1,847,783	-				+0.7
1,847,783	-				+0.9
1,847,783	-				-0.2
1,847,783	-				-0.4
1,847,783	-				+0.7
1,847,783	-				+0.9
1,847,783	-				-0.5
1,847,783	-				-1.6
1,847,783	-				-1.4
1,847,783	-				-1.3
1,847,783	-				+1.2
1,847,783	-				+2.9
1,847,783	-				-2.5
1,847,783	-				-2.7
1,847,783	-				-1.4
1,847,783	-				+1.0
1,847,783	-				+0.5
1,847,788	+				-1.0
1,847,788	+				+0.8
1,847,788	+				+2.2
1,847,788	+				-0.6
1,847,788	+				-0.4
1,847,788	+				+1.6
1,847,788	+				+1.5
1,847,788	+				-2.2
1,847,788	+				-2.4
1,847,788	+				-0.1
1,847,788	+				-3.4
1,847,789	-				-2.2
1,847,789	-				-3.4
1,847,789	-				+1.3
1,847,789	-				+1.2
1,847,789	-				-0.6
1,847,789	-				+0.7
1,847,789	-				+2.8
1,847,789	-				+1.4
1,847,789	-				+1.4
1,847,789	-				-0.4
1,847,789	-				+0.6
1,847,790	+				-0.8
1,847,790	+				+0.3
1,847,790	+				-0.4
1,847,790	+				-3.0
1,847,790	+				+0.0
1,847,790	+				-0.3
1,847,790	+				-1.7
1,847,790	+				-1.2
1,847,790	+				+1.0
1,847,790	+				-0.2
1,847,790	+				+2.2
1,847,790	+				+1.2
1,847,790	+				+1.4
1,847,790	+				+0.7
1,847,790	+				-3.0
1,847,791	-				-2.1
1,847,791	-				+3.2
1,847,791	-				-1.0
1,847,791	-				-0.4
1,847,791	-				+3.6
1,847,791	-				-2.6
1,847,791	-				-1.0
1,847,791	-				-1.4
1,847,791	-				+0.8
1,847,791	-				+1.4
1,847,791	-				+2.2
1,847,791	-				+0.8
1,847,791	-				+3.2
1,847,791	-				-0.2
1,847,791	-				-0.8
1,847,791	-				-1.3
1,847,791	-				-2.8
1,847,799	-				+0.0
1,847,821	+				+1.2
1,847,822	-				-1.1
1,847,822	-				-0.2
1,847,822	-				-1.5
1,847,822	-				+0.2
1,847,828	+				-0.8
1,847,829	-				+0.0
1,847,831	+				-0.7
1,847,831	+				+0.1
1,847,831	+				-0.5
1,847,831	+				-1.6
1,847,831	+				-1.3
1,847,831	+				-0.0
1,847,831	+				+0.5
1,847,831	+				+1.2
1,847,831	+				-3.0
1,847,832	-				-0.3
1,847,832	-				+1.7
1,847,853	+				+0.7
1,847,853	+				-2.0
1,847,854	-				-1.0
1,847,854	-				+0.5
1,847,854	-				-0.8
1,847,857	+				-0.5
1,847,857	+				+0.3
1,847,857	+				-1.3
1,847,857	+				+0.6
1,847,857	+				-1.0
1,847,858	-				+1.2
1,847,858	-				+2.1
1,847,858	-				-1.6
1,847,858	-				-1.7
1,847,874	+				+0.9
1,847,875	-				+0.6
1,847,887	+		EFB2_01744	0.14	-0.2
1,847,888	-		EFB2_01744	0.14	+0.7
1,847,925	+		EFB2_01744	0.27	+2.4
1,847,925	+		EFB2_01744	0.27	+0.2
1,847,925	+		EFB2_01744	0.27	-0.5
1,847,925	+		EFB2_01744	0.27	-0.4
1,847,926	-		EFB2_01744	0.28	+0.4
1,847,944	-		EFB2_01744	0.34	+0.2
1,847,944	-		EFB2_01744	0.34	+1.1
1,847,967	+		EFB2_01744	0.42	+1.0
1,847,967	+		EFB2_01744	0.42	+0.3
1,847,967	+		EFB2_01744	0.42	+1.4
1,847,967	+		EFB2_01744	0.42	+2.3
1,847,967	+		EFB2_01744	0.42	+0.8
1,847,968	-		EFB2_01744	0.43	+1.2
1,847,968	-		EFB2_01744	0.43	-1.8
1,847,968	-		EFB2_01744	0.43	-0.4
1,847,974	-		EFB2_01744	0.45	-2.0
1,848,011	+		EFB2_01744	0.58	+1.4
1,848,012	-		EFB2_01744	0.58	+0.6
1,848,016	+		EFB2_01744	0.60	-0.6
1,848,016	+		EFB2_01744	0.60	-1.3
1,848,016	+		EFB2_01744	0.60	-2.5
1,848,016	+		EFB2_01744	0.60	+1.2
1,848,016	+		EFB2_01744	0.60	+0.7
1,848,016	+		EFB2_01744	0.60	+0.7
1,848,016	+		EFB2_01744	0.60	+0.9
1,848,016	+		EFB2_01744	0.60	-2.1
1,848,016	+		EFB2_01744	0.60	-1.0
1,848,016	+		EFB2_01744	0.60	+0.6
1,848,017	-		EFB2_01744	0.60	-1.0
1,848,017	-		EFB2_01744	0.60	+1.3
1,848,017	-		EFB2_01744	0.60	+0.2
1,848,017	-		EFB2_01744	0.60	-0.1
1,848,017	-		EFB2_01744	0.60	+0.3
1,848,017	-		EFB2_01744	0.60	+0.2
1,848,017	-		EFB2_01744	0.60	+1.2
1,848,017	-		EFB2_01744	0.60	-0.5
1,848,017	-		EFB2_01744	0.60	-1.0
1,848,017	-		EFB2_01744	0.60	-0.8
1,848,017	-		EFB2_01744	0.60	+0.2
1,848,017	-		EFB2_01744	0.60	-0.0
1,848,017	-		EFB2_01744	0.60	-0.0
1,848,018	+		EFB2_01744	0.60	-0.5
1,848,018	+		EFB2_01744	0.60	+2.3
1,848,018	+		EFB2_01744	0.60	-0.8
1,848,018	+		EFB2_01744	0.60	-0.9
1,848,019	-		EFB2_01744	0.61	-2.9
1,848,019	-		EFB2_01744	0.61	-0.1
1,848,019	-		EFB2_01744	0.61	-1.2
1,848,019	-		EFB2_01744	0.61	-1.5
1,848,054	+		EFB2_01744	0.73	+0.7
1,848,054	+		EFB2_01744	0.73	-0.0
1,848,055	-		EFB2_01744	0.73	+1.4
1,848,062	+		EFB2_01744	0.76	-0.0
1,848,093	+		EFB2_01744	0.87	+0.6
1,848,165	+				+2.7
1,848,166	-				+0.6
1,848,174	+				-0.3
1,848,175	-				+0.6
1,848,207	+				-2.8
1,848,207	+				-1.0
1,848,208	-				-0.4
1,848,208	-				-2.0
1,848,210	+				-2.2
1,848,210	+				+1.8
1,848,214	-				-0.0
1,848,214	-				-1.0
1,848,214	-				-0.8
1,848,221	-				+1.0
1,848,235	+				-1.4
1,848,268	+				+3.1
1,848,268	+				+0.3
1,848,269	-				-3.0
1,848,377	+				+0.1
1,848,388	-				+2.5
1,848,419	+				-0.4
1,848,420	-				+0.5
1,848,422	+				-1.3
1,848,481	+		EFB2_01745	0.11	-1.0
1,848,578	+		EFB2_01745	0.29	+1.9
1,848,599	+		EFB2_01745	0.32	-0.5
1,848,633	+		EFB2_01745	0.39	-0.1
1,848,634	-		EFB2_01745	0.39	+1.0
1,848,634	-		EFB2_01745	0.39	-0.5
1,848,780	+		EFB2_01745	0.66	+0.4
1,848,781	-		EFB2_01745	0.66	-1.3
1,848,797	+		EFB2_01745	0.69	-0.4
1,848,878	+		EFB2_01745	0.84	-1.8
1,849,027	+				+0.7
1,849,042	+				+1.2
1,849,066	-				-0.4
1,849,102	+				-1.0
1,849,103	-				-0.6
1,849,109	-				-2.6
1,849,109	-				-1.8
1,849,126	+		EFB2_01746	0.12	+1.2