Strain Fitness in Escherichia fergusonii Becca around EFB2_01675

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,762,187	+		EFB2_01674	0.50	-1.3
1,762,187	+		EFB2_01674	0.50	-0.7
1,762,188	-		EFB2_01674	0.50	-4.1
1,762,193	+		EFB2_01674	0.51	+0.6
1,762,193	+		EFB2_01674	0.51	+1.7
1,762,193	+		EFB2_01674	0.51	-0.9
1,762,193	+		EFB2_01674	0.51	-0.4
1,762,193	+		EFB2_01674	0.51	-0.3
1,762,194	-		EFB2_01674	0.51	+0.8
1,762,199	+		EFB2_01674	0.51	+2.6
1,762,200	-		EFB2_01674	0.51	-0.5
1,762,223	+		EFB2_01674	0.53	-0.8
1,762,223	+		EFB2_01674	0.53	-3.1
1,762,223	+		EFB2_01674	0.53	+0.2
1,762,223	+		EFB2_01674	0.53	-0.6
1,762,223	+		EFB2_01674	0.53	+0.9
1,762,223	+		EFB2_01674	0.53	+0.0
1,762,224	-		EFB2_01674	0.53	-0.6
1,762,224	-		EFB2_01674	0.53	-2.4
1,762,224	-		EFB2_01674	0.53	+0.2
1,762,224	-		EFB2_01674	0.53	+0.5
1,762,224	-		EFB2_01674	0.53	+0.5
1,762,224	-		EFB2_01674	0.53	-0.9
1,762,239	+		EFB2_01674	0.55	-1.1
1,762,239	+		EFB2_01674	0.55	-2.5
1,762,239	+		EFB2_01674	0.55	+0.2
1,762,239	+		EFB2_01674	0.55	-2.0
1,762,239	+		EFB2_01674	0.55	+0.7
1,762,239	+		EFB2_01674	0.55	-0.1
1,762,239	+		EFB2_01674	0.55	-0.3
1,762,239	+		EFB2_01674	0.55	+2.6
1,762,239	+		EFB2_01674	0.55	-0.7
1,762,239	+		EFB2_01674	0.55	-0.5
1,762,239	+		EFB2_01674	0.55	-0.4
1,762,239	+		EFB2_01674	0.55	+1.0
1,762,239	+		EFB2_01674	0.55	-0.8
1,762,240	-		EFB2_01674	0.55	-0.7
1,762,240	-		EFB2_01674	0.55	+1.2
1,762,240	-		EFB2_01674	0.55	+0.6
1,762,240	-		EFB2_01674	0.55	+0.7
1,762,240	-		EFB2_01674	0.55	-0.4
1,762,240	-		EFB2_01674	0.55	+2.5
1,762,240	-		EFB2_01674	0.55	-0.9
1,762,240	-		EFB2_01674	0.55	-0.3
1,762,241	+		EFB2_01674	0.55	+1.1
1,762,241	+		EFB2_01674	0.55	-0.5
1,762,241	+		EFB2_01674	0.55	+0.4
1,762,241	+		EFB2_01674	0.55	-2.0
1,762,241	+		EFB2_01674	0.55	-2.5
1,762,241	+		EFB2_01674	0.55	-2.1
1,762,241	+		EFB2_01674	0.55	-1.0
1,762,241	+		EFB2_01674	0.55	+1.2
1,762,241	+		EFB2_01674	0.55	-1.5
1,762,241	+		EFB2_01674	0.55	-0.1
1,762,241	+		EFB2_01674	0.55	+0.2
1,762,241	+		EFB2_01674	0.55	+0.3
1,762,241	+		EFB2_01674	0.55	-0.5
1,762,241	+		EFB2_01674	0.55	+0.4
1,762,241	+		EFB2_01674	0.55	-0.3
1,762,241	+		EFB2_01674	0.55	-0.9
1,762,241	+		EFB2_01674	0.55	+1.0
1,762,241	+		EFB2_01674	0.55	-1.7
1,762,241	+		EFB2_01674	0.55	+0.6
1,762,242	-		EFB2_01674	0.55	-0.1
1,762,242	-		EFB2_01674	0.55	+1.0
1,762,242	-		EFB2_01674	0.55	-3.3
1,762,242	-		EFB2_01674	0.55	-0.5
1,762,242	-		EFB2_01674	0.55	-1.0
1,762,242	-		EFB2_01674	0.55	+2.2
1,762,242	-		EFB2_01674	0.55	+0.2
1,762,242	-		EFB2_01674	0.55	+1.8
1,762,242	-		EFB2_01674	0.55	+1.2
1,762,242	-		EFB2_01674	0.55	-0.8
1,762,242	-		EFB2_01674	0.55	-0.8
1,762,242	-		EFB2_01674	0.55	-2.4
1,762,242	-		EFB2_01674	0.55	-1.1
1,762,242	-		EFB2_01674	0.55	+0.6
1,762,242	-		EFB2_01674	0.55	-0.4
1,762,242	-		EFB2_01674	0.55	+1.9
1,762,286	-		EFB2_01674	0.59	-0.2
1,762,305	+		EFB2_01674	0.60	+0.1
1,762,305	+		EFB2_01674	0.60	-1.8
1,762,305	+		EFB2_01674	0.60	+1.2
1,762,305	+		EFB2_01674	0.60	+1.2
1,762,306	-		EFB2_01674	0.60	-0.2
1,762,306	-		EFB2_01674	0.60	+1.7
1,762,345	-		EFB2_01674	0.64	+0.6
1,762,347	+		EFB2_01674	0.64	-2.0
1,762,347	+		EFB2_01674	0.64	-1.2
1,762,347	+		EFB2_01674	0.64	-0.3
1,762,347	+		EFB2_01674	0.64	-2.0
1,762,348	-		EFB2_01674	0.64	-1.8
1,762,348	-		EFB2_01674	0.64	-0.2
1,762,348	-		EFB2_01674	0.64	+1.4
1,762,348	-		EFB2_01674	0.64	-1.8
1,762,357	+		EFB2_01674	0.65	+0.5
1,762,392	-		EFB2_01674	0.68	+0.2
1,762,423	+		EFB2_01674	0.70	+0.2
1,762,424	-		EFB2_01674	0.70	-1.4
1,762,424	-		EFB2_01674	0.70	+1.7
1,762,427	+		EFB2_01674	0.70	-0.1
1,762,427	+		EFB2_01674	0.70	-0.8
1,762,427	+		EFB2_01674	0.70	-2.7
1,762,427	+		EFB2_01674	0.70	-3.8
1,762,427	+		EFB2_01674	0.70	-0.2
1,762,427	+		EFB2_01674	0.70	+0.3
1,762,427	+		EFB2_01674	0.70	-0.2
1,762,427	+		EFB2_01674	0.70	-0.4
1,762,427	+		EFB2_01674	0.70	+1.6
1,762,427	+		EFB2_01674	0.70	+2.9
1,762,428	-		EFB2_01674	0.71	-0.2
1,762,428	-		EFB2_01674	0.71	-1.5
1,762,428	-		EFB2_01674	0.71	-0.6
1,762,428	-		EFB2_01674	0.71	-2.4
1,762,428	-		EFB2_01674	0.71	-1.7
1,762,428	-		EFB2_01674	0.71	+1.3
1,762,428	-		EFB2_01674	0.71	-1.0
1,762,450	+		EFB2_01674	0.72	+0.7
1,762,451	-		EFB2_01674	0.72	-1.8
1,762,451	-		EFB2_01674	0.72	+0.5
1,762,457	+		EFB2_01674	0.73	-0.5
1,762,457	+		EFB2_01674	0.73	+0.2
1,762,457	+		EFB2_01674	0.73	-0.7
1,762,457	+		EFB2_01674	0.73	-0.7
1,762,457	+		EFB2_01674	0.73	-2.2
1,762,457	+		EFB2_01674	0.73	-1.9
1,762,458	-		EFB2_01674	0.73	-1.5
1,762,458	-		EFB2_01674	0.73	-0.4
1,762,458	-		EFB2_01674	0.73	-0.7
1,762,458	-		EFB2_01674	0.73	-1.4
1,762,458	-		EFB2_01674	0.73	-2.7
1,762,458	-		EFB2_01674	0.73	+0.6
1,762,461	-		EFB2_01674	0.73	-0.8
1,762,461	-		EFB2_01674	0.73	-0.9
1,762,645	+		EFB2_01674	0.89	+0.2
1,762,646	-		EFB2_01674	0.89	-0.2
1,762,646	-		EFB2_01674	0.89	-2.5
1,762,666	+				-0.7
1,762,666	+				+0.9
1,762,666	+				-0.7
1,762,667	-				+0.4
1,762,667	-				-2.0
1,762,667	-				+0.3
1,762,667	-				-0.0
1,762,667	-				+0.6
1,762,686	-				-0.4
1,762,686	-				+0.6
1,762,752	+				+0.0
1,762,781	+				-1.8
1,762,781	+				-1.4
1,762,781	+				+0.4
1,762,781	+				+1.5
1,762,781	+				-0.4
1,762,781	+				+1.3
1,762,781	+				-0.0
1,762,782	-				-0.8
1,762,782	-				+0.6
1,762,782	-				+0.3
1,762,782	-				-1.3
1,762,800	+				+1.7
1,762,800	+				+0.4
1,762,800	+				+1.4
1,762,801	-				-0.1
1,762,801	-				-2.5
1,762,801	-				+1.3
1,762,801	-				-0.5
1,762,839	+				-1.8
1,762,839	+				+3.4
1,762,839	+				-0.2
1,762,839	+				+0.3
1,762,853	+				-1.9
1,762,853	+				-1.0
1,762,854	-				-0.5
1,762,854	-				-1.5
1,762,855	+				+0.3
1,762,855	+				+0.2
1,762,855	+				+0.5
1,762,855	+				-1.7
1,762,855	+				+0.2
1,762,856	-				+0.8
1,762,856	-				-1.9
1,762,862	-				+0.6
1,762,921	+				+1.4
1,762,939	-				-1.5
1,762,939	-				-0.3
1,762,942	+				-2.8
1,762,942	+				+0.6
1,762,942	+				-1.2
1,762,942	+				-0.3
1,762,942	+				-1.8
1,762,942	+				-1.9
1,762,942	+				-0.5
1,762,942	+				-0.2
1,762,942	+				+0.4
1,762,942	+				-1.8
1,762,942	+				+0.3
1,762,942	+				+0.6
1,762,942	+				-1.5
1,762,942	+				+0.6
1,762,942	+				+1.4
1,762,942	+				-0.6
1,762,942	+				+1.5
1,762,942	+				+0.8
1,762,942	+				+0.3
1,762,942	+				+0.9
1,762,942	+				+0.8
1,762,942	+				-0.5
1,762,942	+				+0.1
1,762,942	+				-2.5
1,762,942	+				+0.2
1,762,942	+				+0.7
1,762,943	-				-0.1
1,762,943	-				+1.2
1,762,943	-				-1.3
1,762,943	-				+0.5
1,762,943	-				+0.4
1,762,943	-				+0.2
1,762,943	-				-0.3
1,762,943	-				+0.5
1,762,943	-				-0.4
1,762,943	-				+0.1
1,762,943	-				-0.2
1,762,943	-				+0.6
1,762,943	-				-0.4
1,762,943	-				-0.2
1,762,943	-				-1.8
1,762,943	-				-0.1
1,762,943	-				+0.1
1,762,943	-				-1.3
1,762,943	-				+1.2
1,762,943	-				-0.1
1,762,943	-				-2.2
1,762,943	-				+0.5
1,762,943	-				-0.5
1,762,943	-				+0.9
1,762,943	-				+0.8
1,762,943	-				+0.3
1,762,943	-				+0.9
1,762,943	-				+0.2
1,762,943	-				-0.1
1,762,944	+				+0.8
1,762,944	+				-0.0
1,762,944	+				-0.1
1,762,944	+				+0.6
1,762,944	+				+0.8
1,762,945	-				+0.4
1,762,945	-				-0.6
1,762,945	-				+0.2
1,762,945	-				+0.2
1,762,974	+				+0.9
1,762,975	-				-1.1
1,762,975	-				-0.4
1,762,975	-				+0.4
1,762,977	+				-2.7
1,762,977	+				-0.4
1,762,977	+				-1.3
1,762,977	+				+2.0
1,762,978	-				-0.5
1,762,978	-				-0.3
1,762,981	+				+2.2
1,762,981	+				-0.2
1,762,994	+				-2.1
1,762,995	-				-2.6
1,763,033	+				+1.2
1,763,034	-				-0.7
1,763,034	-				-0.8
1,763,035	+				+1.3
1,763,036	-				+1.2
1,763,036	-				-0.2
1,763,036	-				+1.0
1,763,109	+				-2.2
1,763,109	+				+0.1
1,763,109	+				-0.2
1,763,110	-				+0.9
1,763,110	-				-2.7
1,763,110	-				-1.1
1,763,110	-				+0.0
1,763,110	-				+0.8
1,763,122	+				-2.4
1,763,122	+				+0.9
1,763,157	+		EFB2_01675	0.13	-1.7
1,763,157	+		EFB2_01675	0.13	-0.7
1,763,157	+		EFB2_01675	0.13	-0.3
1,763,158	-		EFB2_01675	0.13	-2.3
1,763,243	+		EFB2_01675	0.38	-1.1
1,763,243	+		EFB2_01675	0.38	-0.0
1,763,267	+		EFB2_01675	0.45	+1.1
1,763,267	+		EFB2_01675	0.45	-1.1
1,763,267	+		EFB2_01675	0.45	-2.7
1,763,267	+		EFB2_01675	0.45	-1.2
1,763,286	+		EFB2_01675	0.50	-2.2
1,763,286	+		EFB2_01675	0.50	+1.1
1,763,286	+		EFB2_01675	0.50	-0.2
1,763,286	+		EFB2_01675	0.50	-3.1
1,763,286	+		EFB2_01675	0.50	-1.4
1,763,286	+		EFB2_01675	0.50	+2.2
1,763,286	+		EFB2_01675	0.50	-2.7
1,763,286	+		EFB2_01675	0.50	-1.2
1,763,286	+		EFB2_01675	0.50	+0.3
1,763,286	+		EFB2_01675	0.50	-0.4
1,763,287	-		EFB2_01675	0.51	-1.0
1,763,287	-		EFB2_01675	0.51	-0.7
1,763,293	+		EFB2_01675	0.52	-1.2
1,763,293	+		EFB2_01675	0.52	+0.1
1,763,294	-		EFB2_01675	0.53	-2.0
1,763,305	+		EFB2_01675	0.56	+0.2
1,763,364	+		EFB2_01675	0.73	-0.6
1,763,365	+		EFB2_01675	0.73	+0.1
1,763,365	+		EFB2_01675	0.73	-1.1
1,763,442	+				+1.3
1,763,442	+				+1.0
1,763,442	+				-0.6
1,763,442	+				+0.2
1,763,442	+				+0.7
1,763,442	+				-0.9
1,763,442	+				-1.8
1,763,443	-				-2.4
1,763,443	-				+2.0
1,763,443	-				-1.2
1,763,443	-				+1.1
1,763,455	-				+1.2
1,763,475	+				-3.2
1,763,475	+				+0.8
1,763,475	+				+0.9
1,763,475	+				-0.8
1,763,475	+				-0.0
1,763,486	+				+0.6
1,763,486	+				-0.2
1,763,486	+				+0.8
1,763,486	+				-0.4
1,763,486	+				-0.7
1,763,486	+				+1.2
1,763,486	+				+0.1
1,763,486	+				+1.4
1,763,486	+				-0.9
1,763,486	+				-0.7
1,763,486	+				-0.1
1,763,486	+				-1.8
1,763,486	+				-1.0
1,763,486	+				-0.5
1,763,487	-				+1.3
1,763,487	-				+0.7
1,763,487	-				+0.2
1,763,487	-				-0.9
1,763,487	-				+0.4
1,763,488	+				-3.7
1,763,488	+				-1.1
1,763,488	+				-2.2
1,763,488	+				+0.7
1,763,488	+				-1.0
1,763,488	+				-0.4
1,763,488	+				-1.7
1,763,488	+				-0.3
1,763,488	+				-1.3
1,763,488	+				+1.8
1,763,488	+				-0.5
1,763,488	+				+0.2
1,763,488	+				-2.5
1,763,488	+				+1.5
1,763,488	+				-1.7
1,763,488	+				-1.8
1,763,488	+				+0.4
1,763,488	+				-1.5
1,763,488	+				+1.3
1,763,489	-				+1.0
1,763,489	-				-1.2
1,763,489	-				+0.6
1,763,489	-				+0.7
1,763,489	-				-3.2
1,763,489	-				-1.5
1,763,489	-				-1.8
1,763,538	+				+0.8
1,763,538	+				+1.8
1,763,538	+				-0.5
1,763,538	+				-0.4
1,763,538	+				+0.3
1,763,538	+				+1.0
1,763,538	+				-1.3
1,763,539	-				+1.7
1,763,539	-				-3.3
1,763,539	-				-1.5
1,763,557	-				-0.5
1,763,574	+				+0.1
1,763,574	+				+1.8
1,763,574	+				+0.7
1,763,574	+				+0.9
1,763,574	+				-2.2
1,763,575	-				-1.5
1,763,575	-				+0.5
1,763,575	-				+1.0
1,763,575	-				-1.2
1,763,575	-				-2.4
1,763,615	-				-0.7
1,763,615	-				+0.4
1,763,615	-				-0.1
1,763,658	+		EFB2_01676	0.12	+1.4
1,763,658	+		EFB2_01676	0.12	-0.2
1,763,659	-		EFB2_01676	0.13	+1.3
1,763,723	+		EFB2_01676	0.17	+1.6
1,763,724	-		EFB2_01676	0.17	+1.4
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