Strain Fitness in Escherichia fergusonii Becca around EFB2_01061

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,096,347	-				-0.5
1,096,347	-				-2.0
1,096,386	+				-2.5
1,096,398	+		EFB2_01059	0.10	-0.7
1,096,399	-		EFB2_01059	0.11	-1.4
1,096,399	-		EFB2_01059	0.11	+0.0
1,096,403	+		EFB2_01059	0.11	+0.4
1,096,403	+		EFB2_01059	0.11	-1.8
1,096,403	+		EFB2_01059	0.11	+0.0
1,096,403	+		EFB2_01059	0.11	+1.9
1,096,403	+		EFB2_01059	0.11	+0.3
1,096,403	+		EFB2_01059	0.11	+0.4
1,096,403	+		EFB2_01059	0.11	-0.0
1,096,403	+		EFB2_01059	0.11	-0.6
1,096,403	+		EFB2_01059	0.11	+0.5
1,096,403	+		EFB2_01059	0.11	+0.3
1,096,403	+		EFB2_01059	0.11	-1.1
1,096,403	+		EFB2_01059	0.11	+0.8
1,096,403	+		EFB2_01059	0.11	+0.3
1,096,403	+		EFB2_01059	0.11	+0.2
1,096,404	-		EFB2_01059	0.12	-1.4
1,096,404	-		EFB2_01059	0.12	-0.0
1,096,404	-		EFB2_01059	0.12	+0.2
1,096,404	-		EFB2_01059	0.12	-0.2
1,096,404	-		EFB2_01059	0.12	+0.5
1,096,404	-		EFB2_01059	0.12	-2.3
1,096,404	-		EFB2_01059	0.12	-0.3
1,096,439	+		EFB2_01059	0.18	-0.4
1,096,439	+		EFB2_01059	0.18	+0.7
1,096,439	+		EFB2_01059	0.18	-0.5
1,096,439	+		EFB2_01059	0.18	+0.3
1,096,440	-		EFB2_01059	0.18	+1.1
1,096,467	+		EFB2_01059	0.23	+1.3
1,096,506	+		EFB2_01059	0.30	+0.3
1,096,506	+		EFB2_01059	0.30	-1.8
1,096,538	-		EFB2_01059	0.35	+0.6
1,096,538	-		EFB2_01059	0.35	-0.4
1,096,620	+		EFB2_01059	0.50	-0.1
1,096,620	+		EFB2_01059	0.50	-0.1
1,096,620	+		EFB2_01059	0.50	-0.3
1,096,620	+		EFB2_01059	0.50	+2.2
1,096,620	+		EFB2_01059	0.50	-0.4
1,096,620	+		EFB2_01059	0.50	+1.1
1,096,621	-		EFB2_01059	0.50	+0.1
1,096,621	-		EFB2_01059	0.50	+0.3
1,096,621	-		EFB2_01059	0.50	-3.5
1,096,621	-		EFB2_01059	0.50	-1.6
1,096,621	-		EFB2_01059	0.50	+0.4
1,096,621	-		EFB2_01059	0.50	-1.8
1,096,621	-		EFB2_01059	0.50	+0.5
1,096,626	+		EFB2_01059	0.51	+0.0
1,096,626	+		EFB2_01059	0.51	-0.0
1,096,626	+		EFB2_01059	0.51	+0.2
1,096,626	+		EFB2_01059	0.51	-1.1
1,096,626	+		EFB2_01059	0.51	+1.0
1,096,626	+		EFB2_01059	0.51	+1.2
1,096,626	+		EFB2_01059	0.51	+0.6
1,096,626	+		EFB2_01059	0.51	-0.3
1,096,626	+		EFB2_01059	0.51	+2.6
1,096,626	+		EFB2_01059	0.51	+1.2
1,096,627	-		EFB2_01059	0.51	-1.5
1,096,627	-		EFB2_01059	0.51	-1.7
1,096,627	-		EFB2_01059	0.51	-1.4
1,096,627	-		EFB2_01059	0.51	-0.6
1,096,627	-		EFB2_01059	0.51	-1.5
1,096,627	-		EFB2_01059	0.51	+0.5
1,096,627	-		EFB2_01059	0.51	-0.1
1,096,627	-		EFB2_01059	0.51	+1.0
1,096,725	+		EFB2_01059	0.68	-1.4
1,096,725	+		EFB2_01059	0.68	+0.3
1,096,726	-		EFB2_01059	0.69	+1.0
1,096,737	+		EFB2_01059	0.71	-0.7
1,096,746	+		EFB2_01059	0.72	-0.5
1,096,764	+		EFB2_01059	0.75	+1.1
1,096,784	+		EFB2_01059	0.79	+0.5
1,096,784	+		EFB2_01059	0.79	-0.7
1,096,784	+		EFB2_01059	0.79	-0.5
1,096,784	+		EFB2_01059	0.79	-0.8
1,096,784	+		EFB2_01059	0.79	-1.8
1,096,784	+		EFB2_01059	0.79	+0.1
1,096,784	+		EFB2_01059	0.79	+1.6
1,096,784	+		EFB2_01059	0.79	+1.0
1,096,784	+		EFB2_01059	0.79	-0.5
1,096,784	+		EFB2_01059	0.79	+1.9
1,096,784	+		EFB2_01059	0.79	+2.0
1,096,784	+		EFB2_01059	0.79	+0.6
1,096,785	-		EFB2_01059	0.79	+1.1
1,096,785	-		EFB2_01059	0.79	-2.4
1,096,785	-		EFB2_01059	0.79	-1.4
1,096,785	-		EFB2_01059	0.79	-0.8
1,096,785	-		EFB2_01059	0.79	-0.1
1,096,785	-		EFB2_01059	0.79	-0.9
1,096,825	-		EFB2_01059	0.86	-2.0
1,096,827	+		EFB2_01059	0.87	+0.9
1,096,827	+		EFB2_01059	0.87	+0.4
1,096,827	+		EFB2_01059	0.87	+1.0
1,096,827	+		EFB2_01059	0.87	-2.8
1,096,827	+		EFB2_01059	0.87	+0.2
1,096,827	+		EFB2_01059	0.87	+0.4
1,096,827	+		EFB2_01059	0.87	-0.1
1,096,827	+		EFB2_01059	0.87	+1.4
1,096,827	+		EFB2_01059	0.87	+1.9
1,096,827	+		EFB2_01059	0.87	-0.2
1,096,828	-		EFB2_01059	0.87	+1.2
1,096,828	-		EFB2_01059	0.87	-0.3
1,096,828	-		EFB2_01059	0.87	+0.2
1,096,828	-		EFB2_01059	0.87	-0.5
1,096,828	-		EFB2_01059	0.87	+0.4
1,096,828	-		EFB2_01059	0.87	-1.1
1,096,828	-		EFB2_01059	0.87	+1.4
1,096,828	-		EFB2_01059	0.87	-0.5
1,096,828	-		EFB2_01059	0.87	+0.2
1,096,828	-		EFB2_01059	0.87	+1.3
1,096,876	+				+0.9
1,096,876	+				-0.7
1,096,876	+				+0.4
1,096,876	+				+1.3
1,096,876	+				+0.3
1,096,876	+				+0.7
1,096,876	+				-0.9
1,096,876	+				-0.7
1,096,876	+				+0.2
1,096,876	+				-1.0
1,096,876	+				-2.0
1,096,876	+				+0.4
1,096,876	+				+0.9
1,096,877	-				+1.5
1,096,877	-				-1.4
1,096,877	-				+0.3
1,096,877	-				-2.3
1,096,877	-				-2.5
1,096,877	-				+2.0
1,096,877	-				-2.6
1,096,877	-				+1.5
1,096,878	+				-1.1
1,096,878	+				-0.4
1,096,879	-				-0.9
1,096,879	-				+0.4
1,096,879	-				+0.4
1,096,879	-				-1.3
1,096,879	-				-0.4
1,096,966	+		EFB2_01060	0.16	+1.0
1,096,967	-		EFB2_01060	0.17	-1.3
1,097,113	+		EFB2_01060	0.52	-0.8
1,097,113	+		EFB2_01060	0.52	-0.6
1,097,113	+		EFB2_01060	0.52	+1.0
1,097,113	+		EFB2_01060	0.52	+0.6
1,097,113	+		EFB2_01060	0.52	-1.1
1,097,113	+		EFB2_01060	0.52	-0.1
1,097,114	-		EFB2_01060	0.53	+0.3
1,097,114	-		EFB2_01060	0.53	-0.1
1,097,118	+		EFB2_01060	0.54	+1.0
1,097,118	+		EFB2_01060	0.54	+0.3
1,097,118	+		EFB2_01060	0.54	+1.1
1,097,118	+		EFB2_01060	0.54	-0.0
1,097,118	+		EFB2_01060	0.54	-1.0
1,097,118	+		EFB2_01060	0.54	+1.3
1,097,118	+		EFB2_01060	0.54	+1.1
1,097,118	+		EFB2_01060	0.54	+0.3
1,097,118	+		EFB2_01060	0.54	-0.2
1,097,118	+		EFB2_01060	0.54	+1.2
1,097,118	+		EFB2_01060	0.54	-0.5
1,097,118	+		EFB2_01060	0.54	+0.2
1,097,118	+		EFB2_01060	0.54	+3.4
1,097,118	+		EFB2_01060	0.54	+0.9
1,097,118	+		EFB2_01060	0.54	-0.8
1,097,118	+		EFB2_01060	0.54	+0.2
1,097,118	+		EFB2_01060	0.54	-1.1
1,097,118	+		EFB2_01060	0.54	-0.5
1,097,118	+		EFB2_01060	0.54	-1.2
1,097,118	+		EFB2_01060	0.54	-2.0
1,097,118	+		EFB2_01060	0.54	-1.0
1,097,118	+		EFB2_01060	0.54	-1.4
1,097,118	+		EFB2_01060	0.54	-2.1
1,097,119	-		EFB2_01060	0.54	-1.4
1,097,119	-		EFB2_01060	0.54	-0.9
1,097,119	-		EFB2_01060	0.54	+1.0
1,097,119	-		EFB2_01060	0.54	-0.1
1,097,119	-		EFB2_01060	0.54	-0.5
1,097,119	-		EFB2_01060	0.54	+1.2
1,097,119	-		EFB2_01060	0.54	-1.2
1,097,119	-		EFB2_01060	0.54	+0.6
1,097,119	-		EFB2_01060	0.54	-2.4
1,097,119	-		EFB2_01060	0.54	-0.7
1,097,119	-		EFB2_01060	0.54	-0.3
1,097,119	-		EFB2_01060	0.54	-3.0
1,097,119	-		EFB2_01060	0.54	-0.3
1,097,119	-		EFB2_01060	0.54	+0.8
1,097,119	-		EFB2_01060	0.54	+0.9
1,097,119	-		EFB2_01060	0.54	+1.1
1,097,119	-		EFB2_01060	0.54	+0.3
1,097,119	-		EFB2_01060	0.54	+1.3
1,097,119	-		EFB2_01060	0.54	-0.8
1,097,119	-		EFB2_01060	0.54	+0.3
1,097,119	-		EFB2_01060	0.54	+0.3
1,097,119	-		EFB2_01060	0.54	-0.6
1,097,119	-		EFB2_01060	0.54	-0.7
1,097,119	-		EFB2_01060	0.54	-0.1
1,097,119	-		EFB2_01060	0.54	-0.6
1,097,152	+		EFB2_01060	0.62	-2.5
1,097,153	-		EFB2_01060	0.62	-0.2
1,097,153	-		EFB2_01060	0.62	+1.2
1,097,162	+		EFB2_01060	0.64	+0.2
1,097,162	+		EFB2_01060	0.64	-0.6
1,097,162	+		EFB2_01060	0.64	-0.4
1,097,162	+		EFB2_01060	0.64	-1.3
1,097,162	+		EFB2_01060	0.64	-2.1
1,097,163	-		EFB2_01060	0.65	-0.2
1,097,163	-		EFB2_01060	0.65	+1.2
1,097,163	-		EFB2_01060	0.65	+1.1
1,097,163	-		EFB2_01060	0.65	-1.0
1,097,163	-		EFB2_01060	0.65	+2.0
1,097,173	+		EFB2_01060	0.67	-0.8
1,097,174	-		EFB2_01060	0.67	+1.6
1,097,174	-		EFB2_01060	0.67	-0.6
1,097,188	-		EFB2_01060	0.71	-2.8
1,097,188	-		EFB2_01060	0.71	+0.5
1,097,263	-		EFB2_01060	0.89	+0.5
1,097,290	+				-0.5
1,097,290	+				-0.4
1,097,290	+				+1.0
1,097,290	+				-0.1
1,097,290	+				-1.8
1,097,290	+				+0.3
1,097,290	+				+1.1
1,097,291	-				+1.6
1,097,291	-				+2.2
1,097,291	-				-2.4
1,097,291	-				-1.8
1,097,291	-				+0.9
1,097,323	+				+0.5
1,097,323	+				-0.1
1,097,323	+				-3.5
1,097,323	+				+0.6
1,097,324	-		EFB2_01061	0.10	+3.1
1,097,324	-		EFB2_01061	0.10	+0.1
1,097,324	-		EFB2_01061	0.10	-1.5
1,097,337	+		EFB2_01061	0.14	-0.2
1,097,337	+		EFB2_01061	0.14	+0.9
1,097,337	+		EFB2_01061	0.14	+0.4
1,097,338	-		EFB2_01061	0.15	+2.2
1,097,338	-		EFB2_01061	0.15	-0.5
1,097,400	+		EFB2_01061	0.34	-0.4
1,097,400	+		EFB2_01061	0.34	-3.2
1,097,400	+		EFB2_01061	0.34	-2.6
1,097,400	+		EFB2_01061	0.34	-1.6
1,097,400	+		EFB2_01061	0.34	+0.8
1,097,400	+		EFB2_01061	0.34	-0.2
1,097,401	-		EFB2_01061	0.34	-0.0
1,097,401	-		EFB2_01061	0.34	-0.3
1,097,401	-		EFB2_01061	0.34	-2.9
1,097,401	-		EFB2_01061	0.34	+0.6
1,097,429	+		EFB2_01061	0.43	+0.7
1,097,491	+		EFB2_01061	0.62	+0.6
1,097,491	+		EFB2_01061	0.62	-1.7
1,097,491	+		EFB2_01061	0.62	+2.9
1,097,492	-		EFB2_01061	0.62	+0.5
1,097,492	-		EFB2_01061	0.62	-0.8
1,097,492	-		EFB2_01061	0.62	+2.2
1,097,492	-		EFB2_01061	0.62	+0.4
1,097,492	-		EFB2_01061	0.62	-1.9
1,097,548	+		EFB2_01061	0.79	-0.2
1,097,549	-		EFB2_01061	0.80	+0.7
1,097,549	-		EFB2_01061	0.80	-1.4
1,097,549	-		EFB2_01061	0.80	+0.4
1,097,553	+		EFB2_01061	0.81	-0.6
1,097,554	-		EFB2_01061	0.81	-0.6
1,097,554	-		EFB2_01061	0.81	-1.8
1,097,554	-		EFB2_01061	0.81	-0.2
1,097,612	+				-1.4
1,097,613	-				-0.6
1,097,613	-				-1.4
1,097,626	+				+1.0
1,097,626	+				+1.7
1,097,626	+				+1.0
1,097,626	+				+1.1
1,097,626	+				+0.0
1,097,627	-				-1.0
1,097,627	-				+0.6
1,097,631	+				+1.4
1,097,632	-				+2.3
1,097,632	-				-0.1
1,097,640	-				+0.6
1,097,744	-				-0.4
1,097,830	+				-1.3
1,097,839	+				-1.0
1,097,884	+				+2.2
1,098,038	+		EFB2_01062	0.12	-0.6
1,098,038	+		EFB2_01062	0.12	-0.8
1,098,047	+		EFB2_01062	0.12	-0.4
1,098,048	-		EFB2_01062	0.12	-2.0
1,098,151	+		EFB2_01062	0.16	-0.1
1,098,194	+		EFB2_01062	0.17	+1.2
1,098,194	+		EFB2_01062	0.17	-1.3
1,098,262	+		EFB2_01062	0.19	+0.6
1,098,262	+		EFB2_01062	0.19	+2.2
1,098,262	+		EFB2_01062	0.19	-1.4
1,098,264	+		EFB2_01062	0.19	+2.2
1,098,346	+		EFB2_01062	0.21	-0.6
1,098,347	-		EFB2_01062	0.21	-1.0
1,098,363	-		EFB2_01062	0.22	+2.2
1,098,379	+		EFB2_01062	0.22	+0.6
1,098,392	+		EFB2_01062	0.23	+1.2
1,098,392	+		EFB2_01062	0.23	+0.2
1,098,393	-		EFB2_01062	0.23	-0.6