Strain Fitness in Escherichia fergusonii Becca around EFB2_01026

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,056,626	+				-0.6
1,056,640	+				-0.8
1,056,644	+				-1.1
1,056,645	-				-0.1
1,056,645	-				+0.3
1,056,645	-				-1.5
1,056,645	-				+0.7
1,056,645	-				-0.4
1,056,645	-				-2.6
1,056,645	-				-1.3
1,056,645	-				+0.2
1,056,646	+				-1.4
1,056,646	+				+0.2
1,056,646	+				+2.0
1,056,646	+				+0.1
1,056,646	+				-0.4
1,056,646	+				-2.0
1,056,646	+				+1.0
1,056,646	+				-0.8
1,056,646	+				+0.8
1,056,647	-				-0.5
1,056,647	-				-2.0
1,056,647	-				+1.0
1,056,647	-				-2.2
1,056,647	-				-1.1
1,056,647	-				-1.0
1,056,647	-				+0.4
1,056,664	+				+1.7
1,056,664	+				+1.0
1,056,665	-				-1.2
1,056,665	-				+0.8
1,056,676	+				-0.4
1,056,677	-				-1.8
1,056,680	+				-0.5
1,056,681	-				+0.4
1,056,689	+				+0.3
1,056,690	-				+1.3
1,056,690	-				-0.3
1,056,692	+				+0.0
1,056,692	+				+0.8
1,056,693	-				+0.3
1,056,693	-				-0.6
1,056,702	+				+0.1
1,056,703	-				-1.8
1,056,712	-				+1.6
1,056,727	-				-3.1
1,056,737	+				+1.3
1,056,737	+				+1.1
1,056,737	+				-0.6
1,056,742	+				+1.3
1,056,743	-				+0.7
1,056,759	+				-0.8
1,056,777	-				-1.9
1,056,778	+				-2.0
1,056,778	+				-1.3
1,056,779	-				+0.7
1,056,796	+				-0.5
1,056,797	-				+0.1
1,056,797	-				+0.4
1,056,839	+				+0.1
1,056,839	+				-0.1
1,056,840	-				-2.5
1,056,840	-				+0.2
1,056,840	-				-0.8
1,056,840	-				-0.1
1,056,840	-				-1.3
1,056,913	+		EFB2_01025	0.19	-0.3
1,056,913	+		EFB2_01025	0.19	+0.4
1,056,913	+		EFB2_01025	0.19	+2.7
1,056,913	+		EFB2_01025	0.19	-0.4
1,056,913	+		EFB2_01025	0.19	-0.2
1,056,913	+		EFB2_01025	0.19	-0.7
1,056,913	+		EFB2_01025	0.19	+1.7
1,056,913	+		EFB2_01025	0.19	-0.2
1,056,913	+		EFB2_01025	0.19	+0.3
1,056,913	+		EFB2_01025	0.19	+0.2
1,056,914	-		EFB2_01025	0.19	+1.4
1,056,914	-		EFB2_01025	0.19	+0.4
1,056,914	-		EFB2_01025	0.19	-0.2
1,056,914	-		EFB2_01025	0.19	+0.2
1,056,914	-		EFB2_01025	0.19	-0.1
1,056,914	-		EFB2_01025	0.19	+1.9
1,056,914	-		EFB2_01025	0.19	-1.4
1,056,914	-		EFB2_01025	0.19	-1.5
1,056,914	-		EFB2_01025	0.19	-0.8
1,056,916	+		EFB2_01025	0.19	-1.5
1,056,916	+		EFB2_01025	0.19	+0.5
1,056,916	+		EFB2_01025	0.19	+0.0
1,056,916	+		EFB2_01025	0.19	-0.1
1,056,916	+		EFB2_01025	0.19	-0.1
1,056,916	+		EFB2_01025	0.19	-0.3
1,056,916	+		EFB2_01025	0.19	+0.9
1,056,917	-		EFB2_01025	0.19	+0.5
1,056,917	-		EFB2_01025	0.19	+0.0
1,056,917	-		EFB2_01025	0.19	-3.3
1,056,917	-		EFB2_01025	0.19	-1.5
1,056,917	-		EFB2_01025	0.19	-2.1
1,056,917	-		EFB2_01025	0.19	+0.2
1,056,917	-		EFB2_01025	0.19	-1.1
1,056,924	-		EFB2_01025	0.20	-2.9
1,056,935	+		EFB2_01025	0.22	+1.9
1,056,935	+		EFB2_01025	0.22	-1.4
1,056,935	+		EFB2_01025	0.22	-2.8
1,056,935	+		EFB2_01025	0.22	+0.5
1,056,935	+		EFB2_01025	0.22	-0.1
1,056,935	+		EFB2_01025	0.22	+1.2
1,056,935	+		EFB2_01025	0.22	+0.1
1,056,935	+		EFB2_01025	0.22	-0.5
1,056,935	+		EFB2_01025	0.22	+0.0
1,056,935	+		EFB2_01025	0.22	+0.2
1,056,935	+		EFB2_01025	0.22	-3.0
1,056,935	+		EFB2_01025	0.22	-0.3
1,056,935	+		EFB2_01025	0.22	-2.1
1,056,935	+		EFB2_01025	0.22	-0.2
1,056,935	+		EFB2_01025	0.22	-0.8
1,056,935	+		EFB2_01025	0.22	-2.1
1,056,935	+		EFB2_01025	0.22	-0.7
1,056,935	+		EFB2_01025	0.22	-0.5
1,056,935	+		EFB2_01025	0.22	-0.9
1,056,935	+		EFB2_01025	0.22	-0.1
1,056,935	+		EFB2_01025	0.22	-2.2
1,056,935	+		EFB2_01025	0.22	+0.6
1,056,935	+		EFB2_01025	0.22	-1.3
1,056,935	+		EFB2_01025	0.22	-1.7
1,056,935	+		EFB2_01025	0.22	-0.4
1,056,935	+		EFB2_01025	0.22	-2.5
1,056,935	+		EFB2_01025	0.22	-0.6
1,056,935	+		EFB2_01025	0.22	+0.6
1,056,935	+		EFB2_01025	0.22	+2.2
1,056,935	+		EFB2_01025	0.22	-1.4
1,056,935	+		EFB2_01025	0.22	+1.1
1,056,935	+		EFB2_01025	0.22	-2.3
1,056,935	+		EFB2_01025	0.22	+0.7
1,056,935	+		EFB2_01025	0.22	+1.6
1,056,935	+		EFB2_01025	0.22	+1.0
1,056,935	+		EFB2_01025	0.22	+0.3
1,056,935	+		EFB2_01025	0.22	+0.6
1,056,935	+		EFB2_01025	0.22	+1.0
1,056,935	+		EFB2_01025	0.22	-2.2
1,056,935	+		EFB2_01025	0.22	-0.7
1,056,935	+		EFB2_01025	0.22	-2.7
1,056,935	+		EFB2_01025	0.22	+0.3
1,056,935	+		EFB2_01025	0.22	-0.3
1,056,935	+		EFB2_01025	0.22	-0.5
1,056,935	+		EFB2_01025	0.22	+0.5
1,056,935	+		EFB2_01025	0.22	-2.1
1,056,935	+		EFB2_01025	0.22	+0.9
1,056,935	+		EFB2_01025	0.22	-0.7
1,056,935	+		EFB2_01025	0.22	+0.0
1,056,935	+		EFB2_01025	0.22	+1.3
1,056,935	+		EFB2_01025	0.22	+1.5
1,056,935	+		EFB2_01025	0.22	-0.3
1,056,935	+		EFB2_01025	0.22	-1.4
1,056,935	+		EFB2_01025	0.22	+0.6
1,056,935	+		EFB2_01025	0.22	-3.3
1,056,935	+		EFB2_01025	0.22	-0.8
1,056,935	+		EFB2_01025	0.22	-3.1
1,056,935	+		EFB2_01025	0.22	-1.2
1,056,935	+		EFB2_01025	0.22	+0.9
1,056,935	+		EFB2_01025	0.22	-0.2
1,056,935	+		EFB2_01025	0.22	-1.5
1,056,935	+		EFB2_01025	0.22	-0.6
1,056,935	+		EFB2_01025	0.22	+0.5
1,056,935	+		EFB2_01025	0.22	+1.3
1,056,935	+		EFB2_01025	0.22	-0.6
1,056,935	+		EFB2_01025	0.22	-2.2
1,056,935	+		EFB2_01025	0.22	+0.4
1,056,935	+		EFB2_01025	0.22	+1.6
1,056,935	+		EFB2_01025	0.22	+0.6
1,056,935	+		EFB2_01025	0.22	+0.5
1,056,936	-		EFB2_01025	0.22	-0.7
1,056,936	-		EFB2_01025	0.22	+0.4
1,056,936	-		EFB2_01025	0.22	-0.9
1,056,936	-		EFB2_01025	0.22	-1.8
1,056,936	-		EFB2_01025	0.22	-1.7
1,056,936	-		EFB2_01025	0.22	-1.0
1,056,936	-		EFB2_01025	0.22	+0.3
1,056,936	-		EFB2_01025	0.22	+0.2
1,056,936	-		EFB2_01025	0.22	+1.2
1,056,936	-		EFB2_01025	0.22	+0.6
1,056,936	-		EFB2_01025	0.22	+0.2
1,056,936	-		EFB2_01025	0.22	+0.0
1,056,936	-		EFB2_01025	0.22	+3.4
1,056,936	-		EFB2_01025	0.22	-0.2
1,056,936	-		EFB2_01025	0.22	-1.3
1,056,936	-		EFB2_01025	0.22	-1.4
1,056,936	-		EFB2_01025	0.22	+0.7
1,056,936	-		EFB2_01025	0.22	-0.0
1,056,936	-		EFB2_01025	0.22	-0.4
1,056,936	-		EFB2_01025	0.22	+0.5
1,056,936	-		EFB2_01025	0.22	-0.3
1,056,936	-		EFB2_01025	0.22	-0.4
1,056,936	-		EFB2_01025	0.22	+0.7
1,056,936	-		EFB2_01025	0.22	-0.1
1,056,936	-		EFB2_01025	0.22	+0.2
1,056,936	-		EFB2_01025	0.22	-0.1
1,056,936	-		EFB2_01025	0.22	+0.7
1,056,936	-		EFB2_01025	0.22	+0.7
1,056,936	-		EFB2_01025	0.22	+0.1
1,056,936	-		EFB2_01025	0.22	-0.7
1,056,936	-		EFB2_01025	0.22	-1.4
1,056,936	-		EFB2_01025	0.22	+0.3
1,056,936	-		EFB2_01025	0.22	+1.7
1,056,936	-		EFB2_01025	0.22	-3.2
1,056,936	-		EFB2_01025	0.22	+0.3
1,056,936	-		EFB2_01025	0.22	-2.5
1,056,936	-		EFB2_01025	0.22	-1.4
1,056,936	-		EFB2_01025	0.22	+0.2
1,056,936	-		EFB2_01025	0.22	-0.5
1,056,936	-		EFB2_01025	0.22	-0.8
1,056,936	-		EFB2_01025	0.22	+1.8
1,056,936	-		EFB2_01025	0.22	+0.3
1,056,936	-		EFB2_01025	0.22	+1.8
1,056,936	-		EFB2_01025	0.22	+0.2
1,056,936	-		EFB2_01025	0.22	+0.3
1,056,936	-		EFB2_01025	0.22	+1.5
1,056,936	-		EFB2_01025	0.22	+0.4
1,056,936	-		EFB2_01025	0.22	+0.8
1,056,936	-		EFB2_01025	0.22	+0.9
1,056,936	-		EFB2_01025	0.22	-0.4
1,056,936	-		EFB2_01025	0.22	-1.9
1,056,936	-		EFB2_01025	0.22	-2.9
1,056,936	-		EFB2_01025	0.22	+0.2
1,056,936	-		EFB2_01025	0.22	+0.3
1,056,936	-		EFB2_01025	0.22	+0.8
1,056,936	-		EFB2_01025	0.22	+0.7
1,056,936	-		EFB2_01025	0.22	+0.7
1,056,936	-		EFB2_01025	0.22	-0.9
1,056,936	-		EFB2_01025	0.22	-2.4
1,056,936	-		EFB2_01025	0.22	+0.2
1,056,936	-		EFB2_01025	0.22	-1.3
1,056,936	-		EFB2_01025	0.22	+1.4
1,056,936	-		EFB2_01025	0.22	-0.3
1,056,936	-		EFB2_01025	0.22	+2.3
1,056,936	-		EFB2_01025	0.22	-1.7
1,056,936	-		EFB2_01025	0.22	-2.5
1,056,941	+		EFB2_01025	0.22	+1.3
1,056,941	+		EFB2_01025	0.22	-1.0
1,056,941	+		EFB2_01025	0.22	+1.6
1,056,941	+		EFB2_01025	0.22	-2.5
1,056,941	+		EFB2_01025	0.22	-1.4
1,057,007	+		EFB2_01025	0.31	-1.4
1,057,007	+		EFB2_01025	0.31	+1.2
1,057,007	+		EFB2_01025	0.31	-0.0
1,057,007	+		EFB2_01025	0.31	-2.3
1,057,007	+		EFB2_01025	0.31	-0.8
1,057,007	+		EFB2_01025	0.31	-1.0
1,057,007	+		EFB2_01025	0.31	-0.9
1,057,007	+		EFB2_01025	0.31	-1.0
1,057,007	+		EFB2_01025	0.31	+1.3
1,057,007	+		EFB2_01025	0.31	+2.2
1,057,007	+		EFB2_01025	0.31	+0.1
1,057,007	+		EFB2_01025	0.31	+1.8
1,057,007	+		EFB2_01025	0.31	-2.1
1,057,007	+		EFB2_01025	0.31	+0.4
1,057,007	+		EFB2_01025	0.31	-0.2
1,057,007	+		EFB2_01025	0.31	+0.5
1,057,008	-		EFB2_01025	0.31	+1.0
1,057,008	-		EFB2_01025	0.31	-1.7
1,057,008	-		EFB2_01025	0.31	+0.2
1,057,008	-		EFB2_01025	0.31	-1.9
1,057,008	-		EFB2_01025	0.31	-1.9
1,057,008	-		EFB2_01025	0.31	-1.1
1,057,009	+		EFB2_01025	0.31	+0.2
1,057,070	+		EFB2_01025	0.39	-0.9
1,057,096	+		EFB2_01025	0.43	-0.2
1,057,096	+		EFB2_01025	0.43	+0.1
1,057,096	+		EFB2_01025	0.43	+0.1
1,057,096	+		EFB2_01025	0.43	-0.8
1,057,097	-		EFB2_01025	0.43	-0.1
1,057,097	-		EFB2_01025	0.43	+1.1
1,057,097	-		EFB2_01025	0.43	+1.3
1,057,097	-		EFB2_01025	0.43	-1.5
1,057,097	-		EFB2_01025	0.43	-1.0
1,057,117	+		EFB2_01025	0.45	-2.9
1,057,117	+		EFB2_01025	0.45	-3.3
1,057,117	+		EFB2_01025	0.45	+0.1
1,057,117	+		EFB2_01025	0.45	+0.8
1,057,117	+		EFB2_01025	0.45	+0.4
1,057,117	+		EFB2_01025	0.45	-1.4
1,057,117	+		EFB2_01025	0.45	+0.5
1,057,117	+		EFB2_01025	0.45	-1.4
1,057,117	+		EFB2_01025	0.45	-0.1
1,057,118	-		EFB2_01025	0.45	-0.5
1,057,118	-		EFB2_01025	0.45	-0.9
1,057,118	-		EFB2_01025	0.45	+0.5
1,057,118	-		EFB2_01025	0.45	-0.7
1,057,118	-		EFB2_01025	0.45	+0.4
1,057,118	-		EFB2_01025	0.45	-1.4
1,057,118	-		EFB2_01025	0.45	+0.0
1,057,145	+		EFB2_01025	0.49	+0.1
1,057,146	-		EFB2_01025	0.49	-0.1
1,057,156	+		EFB2_01025	0.50	+1.0
1,057,186	+		EFB2_01025	0.54	-0.4
1,057,186	+		EFB2_01025	0.54	-1.0
1,057,186	+		EFB2_01025	0.54	-0.2
1,057,186	+		EFB2_01025	0.54	-1.9
1,057,186	+		EFB2_01025	0.54	-1.7
1,057,187	-		EFB2_01025	0.54	-1.6
1,057,187	-		EFB2_01025	0.54	-0.1
1,057,187	-		EFB2_01025	0.54	-1.4
1,057,187	-		EFB2_01025	0.54	+2.2
1,057,187	-		EFB2_01025	0.54	+0.1
1,057,187	-		EFB2_01025	0.54	-0.7
1,057,187	-		EFB2_01025	0.54	+0.6
1,057,187	-		EFB2_01025	0.54	+1.5
1,057,187	-		EFB2_01025	0.54	+0.3
1,057,190	+		EFB2_01025	0.55	-0.6
1,057,190	+		EFB2_01025	0.55	-1.3
1,057,190	+		EFB2_01025	0.55	+0.1
1,057,190	+		EFB2_01025	0.55	+0.6
1,057,191	-		EFB2_01025	0.55	-0.1
1,057,191	-		EFB2_01025	0.55	+1.2
1,057,191	-		EFB2_01025	0.55	+0.3
1,057,191	-		EFB2_01025	0.55	-1.3
1,057,191	-		EFB2_01025	0.55	+0.4
1,057,191	-		EFB2_01025	0.55	+2.2
1,057,191	-		EFB2_01025	0.55	-0.3
1,057,229	+		EFB2_01025	0.60	-0.4
1,057,229	+		EFB2_01025	0.60	-0.2
1,057,229	+		EFB2_01025	0.60	-0.9
1,057,230	-		EFB2_01025	0.60	-1.0
1,057,230	-		EFB2_01025	0.60	+4.1
1,057,230	-		EFB2_01025	0.60	+0.6
1,057,230	-		EFB2_01025	0.60	+0.5
1,057,230	-		EFB2_01025	0.60	-0.6
1,057,230	-		EFB2_01025	0.60	+0.0
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