Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05585 and BACOVA_05586 are separated by 98 nucleotides BACOVA_05586 and BACOVA_05587 overlap by 14 nucleotides BACOVA_05587 and BACOVA_05588 are separated by 23 nucleotides BACOVA_05588 and BACOVA_05589 overlap by 4 nucleotides BACOVA_05589 and BACOVA_05590 overlap by 12 nucleotides
BACOVA_05585: BACOVA_05585 - DNA-binding helix-turn-helix protein, at 1,105,417 to 1,105,719
_05585
BACOVA_05586: BACOVA_05586 - toxin-antitoxin system, toxin component, RelE family, at 1,105,818 to 1,106,111
_05586
BACOVA_05587: BACOVA_05587 - DNA-binding helix-turn-helix protein, at 1,106,098 to 1,106,481
_05587
BACOVA_05588: BACOVA_05588 - hypothetical protein, at 1,106,505 to 1,106,594
_05588
BACOVA_05589: BACOVA_05589 - hypothetical protein, at 1,106,591 to 1,106,749
_05589
BACOVA_05590: BACOVA_05590 - VirE N-terminal domain protein, at 1,106,738 to 1,108,855
_05590
Position (kb)
1106
1107 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1105.615 kb on + strand, within BACOVA_05585 at 1105.615 kb on + strand, within BACOVA_05585 at 1105.615 kb on + strand, within BACOVA_05585 at 1105.651 kb on - strand, within BACOVA_05585 at 1105.692 kb on + strand at 1105.715 kb on + strand at 1105.762 kb on - strand at 1105.804 kb on + strand at 1105.812 kb on + strand at 1105.826 kb on - strand at 1105.952 kb on + strand, within BACOVA_05586 at 1105.952 kb on + strand, within BACOVA_05586 at 1105.969 kb on + strand, within BACOVA_05586 at 1105.970 kb on - strand, within BACOVA_05586 at 1105.983 kb on + strand, within BACOVA_05586 at 1106.006 kb on + strand, within BACOVA_05586 at 1106.042 kb on - strand, within BACOVA_05586 at 1106.054 kb on + strand, within BACOVA_05586 at 1106.054 kb on + strand, within BACOVA_05586 at 1106.082 kb on + strand at 1106.087 kb on + strand at 1106.087 kb on + strand at 1106.092 kb on + strand at 1106.316 kb on + strand, within BACOVA_05587 at 1106.317 kb on - strand, within BACOVA_05587 at 1106.320 kb on + strand, within BACOVA_05587 at 1106.320 kb on + strand, within BACOVA_05587 at 1106.321 kb on - strand, within BACOVA_05587 at 1106.390 kb on - strand, within BACOVA_05587 at 1106.460 kb on + strand at 1106.479 kb on + strand at 1106.479 kb on + strand at 1106.527 kb on + strand, within BACOVA_05588 at 1106.655 kb on + strand, within BACOVA_05589 at 1106.745 kb on + strand at 1106.748 kb on - strand at 1106.748 kb on - strand at 1106.779 kb on + strand at 1106.779 kb on + strand at 1106.877 kb on + strand at 1106.884 kb on - strand at 1106.966 kb on - strand, within BACOVA_05590 at 1107.005 kb on + strand, within BACOVA_05590 at 1107.084 kb on + strand, within BACOVA_05590 at 1107.084 kb on + strand, within BACOVA_05590 at 1107.100 kb on - strand, within BACOVA_05590 at 1107.111 kb on + strand, within BACOVA_05590 at 1107.111 kb on + strand, within BACOVA_05590 at 1107.223 kb on + strand, within BACOVA_05590 at 1107.224 kb on - strand, within BACOVA_05590 at 1107.301 kb on + strand, within BACOVA_05590 at 1107.362 kb on + strand, within BACOVA_05590 at 1107.363 kb on - strand, within BACOVA_05590 at 1107.397 kb on + strand, within BACOVA_05590 at 1107.398 kb on - strand, within BACOVA_05590 at 1107.449 kb on - strand, within BACOVA_05590 at 1107.454 kb on + strand, within BACOVA_05590 at 1107.454 kb on + strand, within BACOVA_05590 at 1107.549 kb on + strand, within BACOVA_05590 at 1107.549 kb on + strand, within BACOVA_05590 at 1107.586 kb on + strand, within BACOVA_05590 at 1107.587 kb on - strand, within BACOVA_05590 at 1107.589 kb on + strand, within BACOVA_05590 at 1107.590 kb on - strand, within BACOVA_05590 at 1107.618 kb on + strand, within BACOVA_05590 at 1107.618 kb on + strand, within BACOVA_05590 at 1107.654 kb on + strand, within BACOVA_05590 at 1107.673 kb on - strand, within BACOVA_05590 at 1107.729 kb on + strand, within BACOVA_05590
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 1,105,615 + BACOVA_05585 0.65 +0.1 1,105,615 + BACOVA_05585 0.65 -0.1 1,105,615 + BACOVA_05585 0.65 -0.2 1,105,651 - BACOVA_05585 0.77 -2.9 1,105,692 + -0.9 1,105,715 + -0.2 1,105,762 - -1.6 1,105,804 + -0.8 1,105,812 + +1.0 1,105,826 - +0.9 1,105,952 + BACOVA_05586 0.46 -0.1 1,105,952 + BACOVA_05586 0.46 +0.4 1,105,969 + BACOVA_05586 0.51 -0.3 1,105,970 - BACOVA_05586 0.52 -0.8 1,105,983 + BACOVA_05586 0.56 -0.4 1,106,006 + BACOVA_05586 0.64 -0.3 1,106,042 - BACOVA_05586 0.76 -1.3 1,106,054 + BACOVA_05586 0.80 -1.0 1,106,054 + BACOVA_05586 0.80 -0.0 1,106,082 + -0.3 1,106,087 + -0.1 1,106,087 + -0.1 1,106,092 + -0.1 1,106,316 + BACOVA_05587 0.57 -2.9 1,106,317 - BACOVA_05587 0.57 -3.8 1,106,320 + BACOVA_05587 0.58 +0.2 1,106,320 + BACOVA_05587 0.58 -0.6 1,106,321 - BACOVA_05587 0.58 -0.8 1,106,390 - BACOVA_05587 0.76 -3.0 1,106,460 + -2.1 1,106,479 + -0.1 1,106,479 + -0.3 1,106,527 + BACOVA_05588 0.24 -0.3 1,106,655 + BACOVA_05589 0.40 +0.5 1,106,745 + -0.0 1,106,748 - -0.1 1,106,748 - -0.8 1,106,779 + -0.6 1,106,779 + +0.2 1,106,877 + -0.5 1,106,884 - +1.0 1,106,966 - BACOVA_05590 0.11 +0.1 1,107,005 + BACOVA_05590 0.13 -0.3 1,107,084 + BACOVA_05590 0.16 -0.1 1,107,084 + BACOVA_05590 0.16 +0.3 1,107,100 - BACOVA_05590 0.17 -0.4 1,107,111 + BACOVA_05590 0.18 -0.9 1,107,111 + BACOVA_05590 0.18 -0.8 1,107,223 + BACOVA_05590 0.23 -0.5 1,107,224 - BACOVA_05590 0.23 +1.0 1,107,301 + BACOVA_05590 0.27 +0.4 1,107,362 + BACOVA_05590 0.29 -0.7 1,107,363 - BACOVA_05590 0.30 +1.2 1,107,397 + BACOVA_05590 0.31 -0.3 1,107,398 - BACOVA_05590 0.31 -0.2 1,107,449 - BACOVA_05590 0.34 -1.0 1,107,454 + BACOVA_05590 0.34 -0.8 1,107,454 + BACOVA_05590 0.34 +0.2 1,107,549 + BACOVA_05590 0.38 +0.1 1,107,549 + BACOVA_05590 0.38 +0.4 1,107,586 + BACOVA_05590 0.40 +0.1 1,107,587 - BACOVA_05590 0.40 -0.8 1,107,589 + BACOVA_05590 0.40 +1.4 1,107,590 - BACOVA_05590 0.40 -0.9 1,107,618 + BACOVA_05590 0.42 -1.4 1,107,618 + BACOVA_05590 0.42 -0.5 1,107,654 + BACOVA_05590 0.43 +0.6 1,107,673 - BACOVA_05590 0.44 -0.6 1,107,729 + BACOVA_05590 0.47 -0.4
Or see this region's nucleotide sequence