Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03817

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03815 and BACOVA_03816 are separated by 84 nucleotidesBACOVA_03816 and BACOVA_03817 are separated by 70 nucleotidesBACOVA_03817 and BACOVA_03818 are separated by 47 nucleotides BACOVA_03815: BACOVA_03815 - TonB-dependent receptor plug domain protein, at 160,438 to 162,624 _03815 BACOVA_03816: BACOVA_03816 - hypothetical protein, at 162,709 to 163,065 _03816 BACOVA_03817: BACOVA_03817 - TrkA C-terminal domain protein, at 163,136 to 164,734 _03817 BACOVA_03818: BACOVA_03818 - cation diffusion facilitator family transporter, at 164,782 to 165,684 _03818 Position (kb) 163 164 165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 162.159 kb on + strand, within BACOVA_03815at 162.247 kb on + strand, within BACOVA_03815at 162.250 kb on + strand, within BACOVA_03815at 162.251 kb on - strand, within BACOVA_03815at 162.254 kb on - strand, within BACOVA_03815at 162.284 kb on - strand, within BACOVA_03815at 162.345 kb on + strand, within BACOVA_03815at 162.348 kb on - strand, within BACOVA_03815at 162.404 kb on + strand, within BACOVA_03815at 162.405 kb on - strand, within BACOVA_03815at 162.438 kb on + strandat 162.442 kb on - strandat 162.442 kb on - strandat 162.460 kb on + strandat 162.460 kb on + strandat 162.463 kb on - strandat 162.465 kb on - strandat 162.530 kb on - strandat 162.614 kb on + strandat 162.636 kb on + strandat 162.654 kb on - strandat 162.654 kb on - strandat 162.674 kb on - strandat 162.695 kb on + strandat 162.696 kb on - strandat 162.696 kb on - strandat 162.744 kb on + strandat 162.744 kb on + strandat 162.745 kb on - strand, within BACOVA_03816at 162.777 kb on - strand, within BACOVA_03816at 162.777 kb on - strand, within BACOVA_03816at 162.786 kb on - strand, within BACOVA_03816at 162.809 kb on + strand, within BACOVA_03816at 162.810 kb on - strand, within BACOVA_03816at 162.869 kb on - strand, within BACOVA_03816at 163.018 kb on - strand, within BACOVA_03816at 163.022 kb on - strand, within BACOVA_03816at 163.034 kb on + strandat 163.035 kb on + strandat 163.042 kb on - strandat 163.101 kb on - strandat 163.141 kb on - strandat 163.182 kb on - strandat 163.209 kb on + strandat 163.209 kb on + strandat 163.210 kb on - strandat 163.215 kb on - strandat 163.229 kb on - strandat 163.347 kb on - strand, within BACOVA_03817at 163.429 kb on + strand, within BACOVA_03817at 163.508 kb on - strand, within BACOVA_03817at 163.531 kb on + strand, within BACOVA_03817at 163.557 kb on - strand, within BACOVA_03817at 163.615 kb on + strand, within BACOVA_03817at 163.615 kb on + strand, within BACOVA_03817at 163.615 kb on + strand, within BACOVA_03817at 163.619 kb on + strand, within BACOVA_03817at 163.724 kb on - strand, within BACOVA_03817at 163.757 kb on - strand, within BACOVA_03817at 163.870 kb on + strand, within BACOVA_03817at 163.874 kb on + strand, within BACOVA_03817at 163.952 kb on - strand, within BACOVA_03817at 163.994 kb on + strand, within BACOVA_03817at 164.003 kb on + strand, within BACOVA_03817at 164.004 kb on - strand, within BACOVA_03817at 164.008 kb on - strand, within BACOVA_03817at 164.030 kb on - strand, within BACOVA_03817at 164.039 kb on - strand, within BACOVA_03817at 164.039 kb on - strand, within BACOVA_03817at 164.045 kb on - strand, within BACOVA_03817at 164.045 kb on - strand, within BACOVA_03817at 164.119 kb on + strand, within BACOVA_03817at 164.193 kb on - strand, within BACOVA_03817at 164.299 kb on - strand, within BACOVA_03817at 164.327 kb on - strand, within BACOVA_03817at 164.389 kb on + strand, within BACOVA_03817at 164.398 kb on + strand, within BACOVA_03817at 164.454 kb on - strand, within BACOVA_03817at 164.461 kb on + strand, within BACOVA_03817at 164.567 kb on + strand, within BACOVA_03817at 164.568 kb on - strand, within BACOVA_03817at 164.642 kb on + strandat 164.720 kb on + strandat 164.741 kb on - strandat 164.748 kb on - strandat 164.752 kb on - strandat 164.770 kb on + strandat 164.877 kb on + strand, within BACOVA_03818at 164.878 kb on - strand, within BACOVA_03818at 164.878 kb on - strand, within BACOVA_03818at 164.878 kb on - strand, within BACOVA_03818at 164.908 kb on - strand, within BACOVA_03818at 164.910 kb on + strand, within BACOVA_03818at 164.964 kb on + strand, within BACOVA_03818at 165.017 kb on - strand, within BACOVA_03818at 165.017 kb on - strand, within BACOVA_03818at 165.099 kb on + strand, within BACOVA_03818at 165.102 kb on + strand, within BACOVA_03818at 165.102 kb on + strand, within BACOVA_03818at 165.103 kb on - strand, within BACOVA_03818at 165.154 kb on - strand, within BACOVA_03818at 165.154 kb on - strand, within BACOVA_03818at 165.155 kb on + strand, within BACOVA_03818at 165.155 kb on + strand, within BACOVA_03818at 165.156 kb on - strand, within BACOVA_03818at 165.156 kb on - strand, within BACOVA_03818at 165.156 kb on - strand, within BACOVA_03818at 165.159 kb on + strand, within BACOVA_03818at 165.159 kb on + strand, within BACOVA_03818at 165.160 kb on - strand, within BACOVA_03818at 165.160 kb on - strand, within BACOVA_03818at 165.162 kb on + strand, within BACOVA_03818at 165.165 kb on + strand, within BACOVA_03818at 165.202 kb on - strand, within BACOVA_03818at 165.202 kb on - strand, within BACOVA_03818at 165.222 kb on - strand, within BACOVA_03818at 165.246 kb on + strand, within BACOVA_03818at 165.349 kb on + strand, within BACOVA_03818at 165.349 kb on + strand, within BACOVA_03818at 165.358 kb on + strand, within BACOVA_03818at 165.375 kb on + strand, within BACOVA_03818at 165.400 kb on - strand, within BACOVA_03818at 165.409 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.430 kb on - strand, within BACOVA_03818at 165.438 kb on + strand, within BACOVA_03818at 165.446 kb on + strand, within BACOVA_03818at 165.460 kb on - strand, within BACOVA_03818at 165.503 kb on - strand, within BACOVA_03818at 165.514 kb on + strand, within BACOVA_03818at 165.547 kb on + strand, within BACOVA_03818at 165.564 kb on - strand, within BACOVA_03818at 165.586 kb on + strand, within BACOVA_03818at 165.602 kb on - strandat 165.619 kb on + strandat 165.624 kb on + strandat 165.657 kb on + strandat 165.689 kb on + strandat 165.697 kb on + strandat 165.697 kb on + strandat 165.698 kb on - strandat 165.698 kb on - strandat 165.702 kb on + strandat 165.711 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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162,159 + BACOVA_03815 0.79 +0.2
162,247 + BACOVA_03815 0.83 -1.6
162,250 + BACOVA_03815 0.83 +0.7
162,251 - BACOVA_03815 0.83 +0.7
162,254 - BACOVA_03815 0.83 -0.9
162,284 - BACOVA_03815 0.84 +2.1
162,345 + BACOVA_03815 0.87 -1.8
162,348 - BACOVA_03815 0.87 -3.1
162,404 + BACOVA_03815 0.90 -0.5
162,405 - BACOVA_03815 0.90 +0.5
162,438 + +0.2
162,442 - +0.7
162,442 - -1.6
162,460 + -0.8
162,460 + +0.6
162,463 - -1.1
162,465 - -0.1
162,530 - +0.5
162,614 + +0.7
162,636 + -0.8
162,654 - -0.8
162,654 - -0.8
162,674 - -0.1
162,695 + +0.1
162,696 - +0.7
162,696 - +0.1
162,744 + -0.1
162,744 + -0.4
162,745 - BACOVA_03816 0.10 -1.4
162,777 - BACOVA_03816 0.19 -0.1
162,777 - BACOVA_03816 0.19 -0.1
162,786 - BACOVA_03816 0.22 +0.9
162,809 + BACOVA_03816 0.28 +0.1
162,810 - BACOVA_03816 0.28 +0.7
162,869 - BACOVA_03816 0.45 +0.4
163,018 - BACOVA_03816 0.87 +0.5
163,022 - BACOVA_03816 0.88 +1.1
163,034 + -0.8
163,035 + -0.2
163,042 - -1.1
163,101 - +1.4
163,141 - +0.6
163,182 - -1.5
163,209 + -0.4
163,209 + -0.0
163,210 - -0.3
163,215 - +0.4
163,229 - +0.2
163,347 - BACOVA_03817 0.13 -0.8
163,429 + BACOVA_03817 0.18 -1.2
163,508 - BACOVA_03817 0.23 -0.2
163,531 + BACOVA_03817 0.25 -0.4
163,557 - BACOVA_03817 0.26 -1.1
163,615 + BACOVA_03817 0.30 -0.5
163,615 + BACOVA_03817 0.30 -0.3
163,615 + BACOVA_03817 0.30 +0.2
163,619 + BACOVA_03817 0.30 +0.6
163,724 - BACOVA_03817 0.37 -0.2
163,757 - BACOVA_03817 0.39 +0.1
163,870 + BACOVA_03817 0.46 -0.5
163,874 + BACOVA_03817 0.46 +0.8
163,952 - BACOVA_03817 0.51 -1.5
163,994 + BACOVA_03817 0.54 -0.6
164,003 + BACOVA_03817 0.54 +0.5
164,004 - BACOVA_03817 0.54 +0.5
164,008 - BACOVA_03817 0.55 +0.1
164,030 - BACOVA_03817 0.56 +0.2
164,039 - BACOVA_03817 0.56 -0.9
164,039 - BACOVA_03817 0.56 +0.0
164,045 - BACOVA_03817 0.57 -0.7
164,045 - BACOVA_03817 0.57 -0.3
164,119 + BACOVA_03817 0.61 -0.6
164,193 - BACOVA_03817 0.66 +1.1
164,299 - BACOVA_03817 0.73 +0.2
164,327 - BACOVA_03817 0.74 +0.2
164,389 + BACOVA_03817 0.78 +0.5
164,398 + BACOVA_03817 0.79 +0.3
164,454 - BACOVA_03817 0.82 +0.1
164,461 + BACOVA_03817 0.83 -0.1
164,567 + BACOVA_03817 0.89 -1.8
164,568 - BACOVA_03817 0.90 +0.2
164,642 + +0.2
164,720 + -1.8
164,741 - -0.3
164,748 - +1.6
164,752 - -1.9
164,770 + -1.5
164,877 + BACOVA_03818 0.11 +0.9
164,878 - BACOVA_03818 0.11 +0.0
164,878 - BACOVA_03818 0.11 +0.2
164,878 - BACOVA_03818 0.11 -0.4
164,908 - BACOVA_03818 0.14 -1.1
164,910 + BACOVA_03818 0.14 +0.3
164,964 + BACOVA_03818 0.20 +0.2
165,017 - BACOVA_03818 0.26 -1.4
165,017 - BACOVA_03818 0.26 +0.6
165,099 + BACOVA_03818 0.35 +1.1
165,102 + BACOVA_03818 0.35 -0.1
165,102 + BACOVA_03818 0.35 -0.2
165,103 - BACOVA_03818 0.36 -1.5
165,154 - BACOVA_03818 0.41 +0.4
165,154 - BACOVA_03818 0.41 +1.1
165,155 + BACOVA_03818 0.41 -0.2
165,155 + BACOVA_03818 0.41 +1.6
165,156 - BACOVA_03818 0.41 -0.1
165,156 - BACOVA_03818 0.41 -1.3
165,156 - BACOVA_03818 0.41 +0.1
165,159 + BACOVA_03818 0.42 -0.3
165,159 + BACOVA_03818 0.42 +0.3
165,160 - BACOVA_03818 0.42 -0.8
165,160 - BACOVA_03818 0.42 -0.3
165,162 + BACOVA_03818 0.42 +0.1
165,165 + BACOVA_03818 0.42 +0.8
165,202 - BACOVA_03818 0.47 -1.4
165,202 - BACOVA_03818 0.47 +0.2
165,222 - BACOVA_03818 0.49 -0.3
165,246 + BACOVA_03818 0.51 -0.1
165,349 + BACOVA_03818 0.63 -0.5
165,349 + BACOVA_03818 0.63 +0.6
165,358 + BACOVA_03818 0.64 +0.1
165,375 + BACOVA_03818 0.66 -0.7
165,400 - BACOVA_03818 0.68 +1.8
165,409 + BACOVA_03818 0.69 +0.7
165,429 + BACOVA_03818 0.72 -0.3
165,429 + BACOVA_03818 0.72 +0.2
165,429 + BACOVA_03818 0.72 -1.1
165,430 - BACOVA_03818 0.72 -0.3
165,438 + BACOVA_03818 0.73 +0.2
165,446 + BACOVA_03818 0.74 -0.2
165,460 - BACOVA_03818 0.75 -0.5
165,503 - BACOVA_03818 0.80 -0.6
165,514 + BACOVA_03818 0.81 -0.8
165,547 + BACOVA_03818 0.85 -0.6
165,564 - BACOVA_03818 0.87 -0.5
165,586 + BACOVA_03818 0.89 -1.5
165,602 - +1.2
165,619 + +0.8
165,624 + +0.9
165,657 + +0.4
165,689 + -1.1
165,697 + +0.9
165,697 + +0.2
165,698 - -1.8
165,698 - -0.0
165,702 + -0.8
165,711 + +0.1

Or see this region's nucleotide sequence