Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28110

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_28105 and lomR are separated by 64 nucleotideslomR and NIAGMN_28115 are separated by 66 nucleotides NIAGMN_28105: NIAGMN_28105 - Prophage tail fibre N-terminal, at 5,441,360 to 5,444,275 _28105 NIAGMN_28110: lomR - Ail/Lom family protein, at 5,444,340 to 5,444,939 lomR NIAGMN_28115: NIAGMN_28115 - phage portal protein, at 5,445,006 to 5,448,404 _28115 Position (kb) 5444 5445Strain fitness (log2 ratio) -1 0 1at 5443.432 kb on + strand, within NIAGMN_28105at 5445.912 kb on + strand, within NIAGMN_28115

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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5,443,432 + NIAGMN_28105 0.71 +0.2
5,445,912 + NIAGMN_28115 0.27 +0.7

Or see this region's nucleotide sequence