Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28045

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntompT and menH are separated by 186 nucleotidesmenH and NIAGMN_28050 are separated by 302 nucleotides NIAGMN_28040: ompT - omptin family outer membrane protease OmpT, at 5,431,660 to 5,432,613 ompT NIAGMN_28045: menH - alpha/beta hydrolase, at 5,432,800 to 5,434,284 menH NIAGMN_28050: NIAGMN_28050 - IS66-like element ISEc8 family transposase, at 5,434,587 to 5,436,125 _28050 Position (kb) 5432 5433 5434 5435Strain fitness (log2 ratio) -1 0 1at 5431.875 kb on + strand, within ompTat 5431.888 kb on - strand, within ompTat 5431.910 kb on + strand, within ompTat 5431.910 kb on + strand, within ompTat 5431.910 kb on + strand, within ompTat 5431.959 kb on + strand, within ompTat 5432.095 kb on + strand, within ompTat 5432.161 kb on + strand, within ompTat 5432.161 kb on + strand, within ompTat 5432.162 kb on - strand, within ompTat 5432.163 kb on + strand, within ompTat 5432.167 kb on + strand, within ompTat 5432.257 kb on + strand, within ompTat 5432.313 kb on + strand, within ompTat 5432.380 kb on + strand, within ompTat 5432.410 kb on + strand, within ompTat 5432.461 kb on + strand, within ompTat 5432.572 kb on + strandat 5432.675 kb on + strandat 5432.717 kb on - strandat 5432.874 kb on - strandat 5432.889 kb on + strandat 5432.889 kb on + strandat 5433.430 kb on + strand, within menHat 5433.642 kb on - strand, within menH

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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5,431,875 + ompT NIAGMN_28040 0.23 -0.1
5,431,888 - ompT NIAGMN_28040 0.24 -0.4
5,431,910 + ompT NIAGMN_28040 0.26 +1.0
5,431,910 + ompT NIAGMN_28040 0.26 +1.4
5,431,910 + ompT NIAGMN_28040 0.26 +1.2
5,431,959 + ompT NIAGMN_28040 0.31 +0.9
5,432,095 + ompT NIAGMN_28040 0.46 +0.1
5,432,161 + ompT NIAGMN_28040 0.53 +0.5
5,432,161 + ompT NIAGMN_28040 0.53 +1.1
5,432,162 - ompT NIAGMN_28040 0.53 -1.0
5,432,163 + ompT NIAGMN_28040 0.53 -0.2
5,432,167 + ompT NIAGMN_28040 0.53 -1.2
5,432,257 + ompT NIAGMN_28040 0.63 +1.0
5,432,313 + ompT NIAGMN_28040 0.68 -0.1
5,432,380 + ompT NIAGMN_28040 0.75 +0.0
5,432,410 + ompT NIAGMN_28040 0.79 -0.3
5,432,461 + ompT NIAGMN_28040 0.84 +1.3
5,432,572 + +0.8
5,432,675 + -0.4
5,432,717 - -0.4
5,432,874 - -0.7
5,432,889 + -0.6
5,432,889 + -1.2
5,433,430 + menH NIAGMN_28045 0.42 -0.6
5,433,642 - menH NIAGMN_28045 0.57 -0.4

Or see this region's nucleotide sequence