Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27470

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpaa and NIAGMN_27470 are separated by 859 nucleotidesNIAGMN_27470 and NIAGMN_27475 are separated by 186 nucleotidesNIAGMN_27475 and eCs1768 are separated by 31 nucleotides NIAGMN_27465: paa - outer membrane adhesin Paa, at 5,324,813 to 5,325,571 paa NIAGMN_27470: NIAGMN_27470 - DNA-binding protein, at 5,326,431 to 5,327,012 _27470 NIAGMN_27475: NIAGMN_27475 - replication protein, at 5,327,199 to 5,327,621 _27475 NIAGMN_27480: eCs1768 - DNA-binding protein, at 5,327,653 to 5,328,693 eCs1768 Position (kb) 5326 5327 5328Strain fitness (log2 ratio) -1 0 1at 5325.504 kb on + strandat 5325.631 kb on - strandat 5325.913 kb on - strandat 5326.005 kb on - strandat 5326.005 kb on - strandat 5326.053 kb on + strandat 5326.071 kb on + strandat 5326.467 kb on - strandat 5326.560 kb on - strand, within NIAGMN_27470at 5327.456 kb on - strand, within NIAGMN_27475at 5327.889 kb on + strand, within eCs1768

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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5,325,504 + -0.3
5,325,631 - -0.3
5,325,913 - -0.7
5,326,005 - -0.3
5,326,005 - -1.1
5,326,053 + +1.6
5,326,071 + +1.6
5,326,467 - +0.6
5,326,560 - NIAGMN_27470 0.22 +0.0
5,327,456 - NIAGMN_27475 0.61 +1.6
5,327,889 + eCs1768 NIAGMN_27480 0.23 -1.1

Or see this region's nucleotide sequence