Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27030

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhdJ and NIAGMN_27030 are separated by 150 nucleotidesNIAGMN_27030 and NIAGMN_27035 are separated by 226 nucleotides NIAGMN_27025: yhdJ - DNA adenine methylase, at 5,259,473 to 5,260,531 yhdJ NIAGMN_27030: NIAGMN_27030 - TrmB family transcriptional regulator, at 5,260,682 to 5,260,879 _27030 NIAGMN_27035: NIAGMN_27035 - antitermination protein, at 5,261,106 to 5,261,927 _27035 Position (kb) 5260 5261Strain fitness (log2 ratio) -1 0 1at 5259.776 kb on - strand, within yhdJat 5259.776 kb on - strand, within yhdJat 5259.778 kb on - strand, within yhdJat 5261.234 kb on + strand, within NIAGMN_27035

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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5,259,776 - yhdJ NIAGMN_27025 0.29 +0.6
5,259,776 - yhdJ NIAGMN_27025 0.29 +0.0
5,259,778 - yhdJ NIAGMN_27025 0.29 +0.6
5,261,234 + NIAGMN_27035 0.16 +1.3

Or see this region's nucleotide sequence