Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_26985 and NIAGMN_26990 overlap by 4 nucleotides NIAGMN_26990 and NIAGMN_26995 are separated by 1 nucleotides NIAGMN_26995 and NIAGMN_27000 are separated by 198 nucleotides NIAGMN_27000 and NIAGMN_27005 are separated by 4 nucleotides NIAGMN_27005 and NIAGMN_27010 are separated by 76 nucleotides NIAGMN_27010 and NIAGMN_27015 are separated by 356 nucleotides
NIAGMN_26985: NIAGMN_26985 - hypothetical protein, at 5,254,550 to 5,254,774
_26985
NIAGMN_26990: NIAGMN_26990 - lysis protein, at 5,254,771 to 5,255,265
_26990
NIAGMN_26995: NIAGMN_26995 - Phage protein, at 5,255,267 to 5,255,365
_26995
NIAGMN_27000: NIAGMN_27000 - SAR-endolysin, at 5,255,564 to 5,256,097
_27000
NIAGMN_27005: NIAGMN_27005 - holin, at 5,256,102 to 5,256,317
_27005
NIAGMN_27010: NIAGMN_27010 - DUF826 domain-containing protein, at 5,256,394 to 5,256,666
_27010
NIAGMN_27015: NIAGMN_27015 - sialate O-acetylesterase, at 5,257,023 to 5,258,969
_27015
Position (kb) 5255
5256
5257 Strain fitness (log2 ratio) -1
0
1 at 5254.676 kb on - strand, within NIAGMN_26985 at 5254.676 kb on - strand, within NIAGMN_26985 at 5255.330 kb on - strand, within NIAGMN_26995 at 5256.149 kb on - strand, within NIAGMN_27005 at 5256.953 kb on + strand at 5256.956 kb on + strand at 5256.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 5,254,676 - NIAGMN_26985 0.56 -0.7 5,254,676 - NIAGMN_26985 0.56 -0.8 5,255,330 - NIAGMN_26995 0.64 -0.1 5,256,149 - NIAGMN_27005 0.22 +0.6 5,256,953 + +0.0 5,256,956 + -1.4 5,256,956 + +0.0
Or see this region's nucleotide sequence