Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26270

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_26260 and NIAGMN_26265 are separated by 79 nucleotidesNIAGMN_26265 and ydaF are separated by 432 nucleotidesydaF and sieB overlap by 4 nucleotidessieB and kilR are separated by 318 nucleotides NIAGMN_26260: NIAGMN_26260 - DNA-binding protein, at 5,116,543 to 5,116,797 _26260 NIAGMN_26265: NIAGMN_26265 - transcriptional regulator, at 5,116,877 to 5,117,296 _26265 NIAGMN_26270: ydaF - Uncharacterized protein YdaF, at 5,117,729 to 5,117,884 ydaF NIAGMN_26275: sieB - Superinfection exclusion protein B, at 5,117,881 to 5,118,492 sieB NIAGMN_26280: kilR - killing protein KilR, at 5,118,811 to 5,119,032 kilR Position (kb) 5117 5118Strain fitness (log2 ratio) -1 0 1at 5117.700 kb on - strandat 5118.388 kb on + strand, within sieB

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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5,117,700 - +1.2
5,118,388 + sieB NIAGMN_26275 0.83 +0.0

Or see this region's nucleotide sequence