Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24915

Experiment: EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntint and xis overlap by 11 nucleotidesxis and NIAGMN_24920 are separated by 103 nucleotidesNIAGMN_24920 and NIAGMN_24925 overlap by 4 nucleotides NIAGMN_24910: int - Integrase, at 4,851,957 to 4,853,099 int NIAGMN_24915: xis - Excisionase, at 4,853,089 to 4,853,325 xis NIAGMN_24920: NIAGMN_24920 - replication protein, at 4,853,429 to 4,854,253 _24920 NIAGMN_24925: NIAGMN_24925 - Replication protein P, at 4,854,250 to 4,854,951 _24925 Position (kb) 4853 4854Strain fitness (log2 ratio) -1 0 1 2at 4852.221 kb on - strand, within intat 4853.315 kb on - strandat 4853.378 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV240
remove
4,852,221 - int NIAGMN_24910 0.23 +1.9
4,853,315 - -0.4
4,853,378 + -0.6

Or see this region's nucleotide sequence