Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23465

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_23460 and NIAGMN_23465 are separated by 134 nucleotidesNIAGMN_23465 and NIAGMN_23470 are separated by 40 nucleotidesNIAGMN_23470 and NIAGMN_23475 are separated by 76 nucleotidesNIAGMN_23475 and NIAGMN_23480 are separated by 4 nucleotides NIAGMN_23460: NIAGMN_23460 - sialate O-acetylesterase, at 4,589,997 to 4,591,934 _23460 NIAGMN_23465: NIAGMN_23465 - DUF1378 domain-containing protein, at 4,592,069 to 4,592,248 _23465 NIAGMN_23470: NIAGMN_23470 - DUF826 domain-containing protein, at 4,592,289 to 4,592,561 _23470 NIAGMN_23475: NIAGMN_23475 - holin, at 4,592,638 to 4,592,853 _23475 NIAGMN_23480: NIAGMN_23480 - SAR-endolysin, at 4,592,858 to 4,593,391 _23480 Position (kb) 4592 4593Strain fitness (log2 ratio) -1 0 1at 4591.888 kb on + strandat 4592.014 kb on + strandat 4592.043 kb on - strandat 4592.444 kb on - strand, within NIAGMN_23470

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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4,591,888 + +0.8
4,592,014 + -1.0
4,592,043 - +0.7
4,592,444 - NIAGMN_23470 0.57 +0.8

Or see this region's nucleotide sequence