Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22885

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and NIAGMN_22885 are separated by 319 nucleotidesNIAGMN_22885 and NIAGMN_22890 are separated by 4 nucleotidesNIAGMN_22890 and NIAGMN_22895 are separated by 50 nucleotides NIAGMN_22875: tnp-IS3 - IS3 family transposase, at 4,505,626 to 4,506,513 tnp-IS3 NIAGMN_22880: tnp-IS3 - IS3 family transposase, at 4,506,513 to 4,506,839 tnp-IS3 NIAGMN_22885: NIAGMN_22885 - lysis protein, at 4,507,159 to 4,507,365 _22885 NIAGMN_22890: NIAGMN_22890 - DUF1327 domain-containing protein, at 4,507,370 to 4,507,714 _22890 NIAGMN_22895: NIAGMN_22895 - SAR-endolysin, at 4,507,765 to 4,508,298 _22895 Position (kb) 4507 4508Strain fitness (log2 ratio) -1 0 1 2at 4506.928 kb on + strandat 4506.928 kb on + strandat 4506.929 kb on - strandat 4506.929 kb on - strandat 4506.929 kb on - strandat 4506.929 kb on - strandat 4506.929 kb on - strandat 4506.932 kb on + strandat 4506.932 kb on + strandat 4506.932 kb on + strandat 4506.932 kb on + strandat 4506.932 kb on + strandat 4506.932 kb on + strandat 4506.932 kb on + strandat 4506.932 kb on + strandat 4506.932 kb on + strandat 4506.933 kb on - strandat 4506.933 kb on - strandat 4506.933 kb on - strandat 4506.933 kb on - strandat 4506.935 kb on - strandat 4506.981 kb on + strandat 4506.981 kb on + strandat 4506.993 kb on + strandat 4508.134 kb on + strand, within NIAGMN_22895at 4508.145 kb on + strand, within NIAGMN_22895

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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4,506,928 + +0.3
4,506,928 + +0.0
4,506,929 - +1.3
4,506,929 - +1.0
4,506,929 - -0.5
4,506,929 - -0.3
4,506,929 - +1.6
4,506,932 + -1.4
4,506,932 + -0.1
4,506,932 + +1.2
4,506,932 + +1.2
4,506,932 + -1.0
4,506,932 + +0.7
4,506,932 + +1.6
4,506,932 + +1.4
4,506,932 + -0.6
4,506,933 - +0.6
4,506,933 - +1.8
4,506,933 - -1.7
4,506,933 - +0.0
4,506,935 - +0.6
4,506,981 + +1.6
4,506,981 + +0.6
4,506,993 + -0.4
4,508,134 + NIAGMN_22895 0.69 -0.3
4,508,145 + NIAGMN_22895 0.71 -0.7

Or see this region's nucleotide sequence