Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt udk and dcd are separated by 91 nucleotides dcd and asmA are separated by 21 nucleotides
NIAGMN_22215: udk - uridine kinase, at 4,381,577 to 4,382,218
udk
NIAGMN_22220: dcd - dCTP deaminase, at 4,382,310 to 4,382,891
dcd
NIAGMN_22225: asmA - outer membrane assembly protein AsmA, at 4,382,913 to 4,384,766
asmA
Position (kb) 4382
4383 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4381.313 kb on - strand at 4381.350 kb on + strand at 4381.361 kb on - strand at 4381.407 kb on - strand at 4381.409 kb on - strand at 4381.575 kb on - strand at 4381.722 kb on - strand, within udk at 4381.865 kb on + strand, within udk at 4381.866 kb on - strand, within udk at 4381.876 kb on + strand, within udk at 4381.876 kb on + strand, within udk at 4381.883 kb on - strand, within udk at 4381.993 kb on + strand, within udk at 4382.005 kb on + strand, within udk at 4382.005 kb on + strand, within udk at 4382.005 kb on + strand, within udk at 4382.125 kb on + strand, within udk at 4382.126 kb on - strand, within udk at 4382.132 kb on + strand, within udk at 4382.182 kb on + strand at 4382.184 kb on + strand at 4382.184 kb on + strand at 4382.247 kb on + strand at 4382.268 kb on + strand at 4382.330 kb on + strand at 4382.413 kb on + strand, within dcd at 4382.413 kb on + strand, within dcd at 4382.427 kb on - strand, within dcd at 4382.554 kb on - strand, within dcd at 4382.770 kb on + strand, within dcd at 4382.820 kb on + strand, within dcd at 4382.820 kb on + strand, within dcd at 4382.844 kb on + strand at 4382.889 kb on + strand at 4383.012 kb on + strand at 4383.012 kb on + strand at 4383.013 kb on - strand at 4383.014 kb on + strand at 4383.014 kb on + strand at 4383.038 kb on + strand at 4383.038 kb on + strand at 4383.095 kb on + strand at 4383.095 kb on + strand at 4383.308 kb on + strand, within asmA at 4383.397 kb on + strand, within asmA at 4383.665 kb on + strand, within asmA at 4383.689 kb on + strand, within asmA at 4383.707 kb on + strand, within asmA at 4383.710 kb on + strand, within asmA
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 4,381,313 - -0.7 4,381,350 + -1.7 4,381,361 - +0.7 4,381,407 - +0.7 4,381,409 - +0.7 4,381,575 - +0.7 4,381,722 - udk NIAGMN_22215 0.23 -0.7 4,381,865 + udk NIAGMN_22215 0.45 -0.9 4,381,866 - udk NIAGMN_22215 0.45 +0.8 4,381,876 + udk NIAGMN_22215 0.47 +0.5 4,381,876 + udk NIAGMN_22215 0.47 +0.2 4,381,883 - udk NIAGMN_22215 0.48 +1.7 4,381,993 + udk NIAGMN_22215 0.65 +0.7 4,382,005 + udk NIAGMN_22215 0.67 -0.6 4,382,005 + udk NIAGMN_22215 0.67 +0.1 4,382,005 + udk NIAGMN_22215 0.67 +0.1 4,382,125 + udk NIAGMN_22215 0.85 +1.1 4,382,126 - udk NIAGMN_22215 0.86 +0.2 4,382,132 + udk NIAGMN_22215 0.86 +0.3 4,382,182 + +0.4 4,382,184 + -2.0 4,382,184 + +0.1 4,382,247 + +1.4 4,382,268 + +1.4 4,382,330 + +0.7 4,382,413 + dcd NIAGMN_22220 0.18 +1.7 4,382,413 + dcd NIAGMN_22220 0.18 +1.4 4,382,427 - dcd NIAGMN_22220 0.20 +0.7 4,382,554 - dcd NIAGMN_22220 0.42 +2.1 4,382,770 + dcd NIAGMN_22220 0.79 +2.7 4,382,820 + dcd NIAGMN_22220 0.88 +0.1 4,382,820 + dcd NIAGMN_22220 0.88 +1.7 4,382,844 + +0.7 4,382,889 + +1.0 4,383,012 + +1.1 4,383,012 + +1.7 4,383,013 - -0.2 4,383,014 + +1.7 4,383,014 + +0.3 4,383,038 + -0.7 4,383,038 + +0.7 4,383,095 + -0.0 4,383,095 + +1.0 4,383,308 + asmA NIAGMN_22225 0.21 +0.7 4,383,397 + asmA NIAGMN_22225 0.26 +2.3 4,383,665 + asmA NIAGMN_22225 0.41 +1.1 4,383,689 + asmA NIAGMN_22225 0.42 +2.2 4,383,707 + asmA NIAGMN_22225 0.43 +0.7 4,383,710 + asmA NIAGMN_22225 0.43 +0.8
Or see this region's nucleotide sequence